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Select item 74245291.

Loss of NARS1 impairs progenitor proliferation in cortical brain organoids and leads to microcephaly

Lu Wang, Zhen Li, David Sievert, Desirée E. C. Smith, Marisa I. Mendes, Dillon Y. Chen, Valentina Stanley, Shereen Ghosh, Yulu Wang, Majdi Kara, Ayca Dilruba Aslanger, Rasim O. Rosti, Henry Houlden, Gajja S. Salomons, Joseph G. Gleeson

Nat Commun. 2020; 11: 4038. Published online 2020 Aug 12. doi: 10.1038/s41467-020-17454-4

Correction in:: Nat Commun. 2021; 12: 1192.

PMCID:: PMC7424529

Abstract Article PDF–2.9M

Select item 74138902.

De Novo and Bi-allelic Pathogenic Variants in NARS1 Cause Neurodevelopmental Delay Due to Toxic Gain-of-Function and Partial Loss-of-Function Effects

Andreea Manole, Stephanie Efthymiou, Emer O’Connor, Marisa I. Mendes, Matthew Jennings, Reza Maroofian, Indran Davagnanam, Kshitij Mankad, Maria Rodriguez Lopez, Vincenzo Salpietro, Ricardo Harripaul, Lauren Badalato, Jagdeep Walia, Christopher S. Francklyn, Alkyoni Athanasiou-Fragkouli, Roisin Sullivan, Sonal Desai, Kristin Baranano, Faisal Zafar, Nuzhat Rana, Muhammed Ilyas, Alejandro Horga, Majdi Kara, Francesca Mattioli, Alice Goldenberg, Helen Griffin, Amelie Piton, Lindsay B. Henderson, Benyekhlef Kara, Ayca Dilruba Aslanger, Joost Raaphorst, Rolph Pfundt, Ruben Portier, Marwan Shinawi, Amelia Kirby, Katherine M. Christensen, Lu Wang, Rasim O. Rosti, Sohail A. Paracha, Muhammad T. Sarwar, Dagan Jenkins, SYNAPS Study Group, Jawad Ahmed, Federico A. Santoni, Emmanuelle Ranza, Justyna Iwaszkiewicz, Cheryl Cytrynbaum, Rosanna Weksberg, Ingrid M. Wentzensen, Maria J. Guillen Sacoto, Yue Si, Aida Telegrafi, Marisa V. Andrews, Dustin Baldridge, Heinz Gabriel, Julia Mohr, Barbara Oehl-Jaschkowitz, Sylvain Debard, Bruno Senger, Frédéric Fischer, Conny van Ravenwaaij, Annemarie J.M. Fock, Servi J.C. Stevens, Jürg Bähler, Amina Nasar, John F. Mantovani, Adnan Manzur, Anna Sarkozy, Desirée E.C. Smith, Gajja S. Salomons, Zubair M. Ahmed, Shaikh Riazuddin, Saima Riazuddin, Muhammad A. Usmani, Annette Seibt, Muhammad Ansar, Stylianos E. Antonarakis, John B. Vincent, Muhammad Ayub, Mona Grimmel, Anne Marie Jelsig, Tina Duelund Hjortshøj, Helena Gásdal Karstensen, Marybeth Hummel, Tobias B. Haack, Yalda Jamshidi, Felix Distelmaier, Rita Horvath, Joseph G. Gleeson, Hubert Becker, Jean-Louis Mandel, David A. Koolen, Henry Houlden

Am J Hum Genet. 2020 Aug 6; 107(2): 311–324. Published online 2020 Jul 31. doi: 10.1016/j.ajhg.2020.06.016

PMCID:: PMC7413890

Abstract Article PDF–2.7M

Select item 1479563.

Human asparaginyl-tRNA synthetase: molecular cloning and the inference of the evolutionary history of Asx-tRNA synthetase family.

K Shiba, H Motegi, M Yoshida, T Noda

Nucleic Acids Res. 1998 Nov 15; 26(22): 5045–5051. doi: 10.1093/nar/26.22.5045

PMCID:: PMC147956

Summary PDF–605K

Select item 49375124.

Identification and Characterization of Potential Biomarkers by Quantitative Tissue Proteomics of Primary Lung Adenocarcinoma

Chiung-Hung Hsu, Chia-Wei Hsu, Chuen Hsueh, Chih-Liang Wang, Yi-Cheng Wu, Chih-Ching Wu, Chin-Ching Liu, Jau-Song Yu, Yu-Sun Chang, Chia-Jung Yu

Mol Cell Proteomics. 2016 Jul; 15(7): 2396–2410. Published online 2016 May 9. doi: 10.1074/mcp.M115.057026

PMCID:: PMC4937512

Abstract Article PDF–3.5M

Select item 1472685.

Human cytosolic asparaginyl-tRNA synthetase: cDNA sequence, functional expression in Escherichia coli and characterization as human autoantigen.

M Beaulande, N Tarbouriech, M Härtlein

Nucleic Acids Res. 1998 Jan 15; 26(2): 521–524. doi: 10.1093/nar/26.2.521

PMCID:: PMC147268

Summary PDF–188K

Select item 95848946.

Role of the E3 ubiquitin-ligase Hakai in intestinal inflammation and cancer bowel disease

Daniel Roca-Lema, Macarena Quiroga, Vineeta Khare, Andrea Díaz-Díaz, Aida Barreiro-Alonso, Andrea Rodríguez-Alonso, Ángel Concha, Gabriela Romay, M. Esperanza Cerdán, Christoph Gasche, Angélica Figueroa

Sci Rep. 2022; 12: 17571. Published online 2022 Oct 20. doi: 10.1038/s41598-022-22295-w

PMCID:: PMC9584894

Abstract Article PDF–2.5M

Select item 27581557.

Quantitative Analysis of global Ubiquitination in HeLa Cells by Mass Spectrometry

David Meierhofer, Xiaorong Wang, Lan Huang, Peter Kaiser

J Proteome Res. Author manuscript; available in PMC 2009 Oct 6.

Published in final edited form as: J Proteome Res. 2008 Oct; 7(10): 4566–4576. Published online 2008 Sep 10. doi: 10.1021/pr800468j

PMCID:: PMC2758155

Abstract Article PDF–813K

Select item 32267198.

Global Identification of Modular Cullin-Ring Ligase Substrates

Michael J. Emanuele, Andrew E.H. Elia, Qikai Xu, Claudio R Thoma, Lior Izhar, Yumei Leng, Ailan Guo, Yi-Ning Chen, John Rush, Paul Wei-Che Hsu, Hsueh-Chi Sherry Yen, Stephen J Elledge

Cell. Author manuscript; available in PMC 2012 Apr 14.

Published in final edited form as: Cell. 2011 Oct 14; 147(2): 459–474. Published online 2011 Sep 29. doi: 10.1016/j.cell.2011.09.019

Correction in:: volume 148 on page 620

PMCID:: PMC3226719

Abstract Article PDF–5.9M

Select item 46056109.

Characterization of the Cardiac Overexpression of HSPB2 Reveals Mitochondrial and Myogenic Roles Supported by a Cardiac HspB2 Interactome

Julianne H. Grose, Kelsey Langston, Xiaohui Wang, Shayne Squires, Soumyajit Banerjee Mustafi, Whitney Hayes, Jonathan Neubert, Susan K. Fischer, Matthew Fasano, Gina Moore Saunders, Qiang Dai, Elisabeth Christians, E. Douglas Lewandowski, Peipei Ping, Ivor J. Benjamin

PLoS One. 2015; 10(10): e0133994. Published online 2015 Oct 14. doi: 10.1371/journal.pone.0133994

PMCID:: PMC4605610

Abstract Article PDF–6.8M

Select item 320042710.

Systematic and quantitative assessment of the ubiquitin modified proteome

Woong Kim, Eric J. Bennett, Edward L. Huttlin, Ailan Guo, Jing Li, Anthony Possemato, Mathew E. Sowa, Ramin Rad, John Rush, Michael J. Comb, J. Wade Harper, Steven P. Gygi

Mol Cell. Author manuscript; available in PMC 2012 Oct 21.

Published in final edited form as: Mol Cell. 2011 Oct 21; 44(2): 325–340. Published online 2011 Sep 8. doi: 10.1016/j.molcel.2011.08.025

PMCID:: PMC3200427

Abstract Article PDF–3.1M

Select item 320587611.

A Proteome-wide, Quantitative Survey of In Vivo Ubiquitylation Sites Reveals Widespread Regulatory Roles

Sebastian A. Wagner, Petra Beli, Brian T. Weinert, Michael L. Nielsen, Jürgen Cox, Matthias Mann, Chunaram Choudhary

Mol Cell Proteomics. 2011 Oct; 10(10): M111.013284. Published online 2011 Sep 1. doi: 10.1074/mcp.M111.013284

PMCID:: PMC3205876

Abstract Article PDF–4.8M

Select item 304715212.

Mass Spectrometric Analysis of Lysine Ubiquitylation Reveals Promiscuity at Site Level

Jannie M. R. Danielsen, Kathrine B. Sylvestersen, Simon Bekker-Jensen, Damian Szklarczyk, Jon W. Poulsen, Heiko Horn, Lars J. Jensen, Niels Mailand, Michael L. Nielsen

Mol Cell Proteomics. 2011 Mar; 10(3): M110.003590. Published online 2010 Dec 7. doi: 10.1074/mcp.M110.003590

PMCID:: PMC3047152

Abstract Article PDF–2.9M

Select item 710529413.

STUB1 is targeted by the SUMO-interacting motif of EBNA1 to maintain Epstein-Barr Virus latency

Yuyan Wang, Shujuan Du, Caixia Zhu, Chong Wang, Nuoya Yu, Ziqi Lin, Jin Gan, Yi Guo, Xinxin Huang, Yuping He, Erle Robertson, Di Qu, Fang Wei, Qiliang Cai

PLoS Pathog. 2020 Mar; 16(3): e1008447. Published online 2020 Mar 16. doi: 10.1371/journal.ppat.1008447

PMCID:: PMC7105294

Abstract Article PDF–4.4M

Select item 332257714.

Host Cell Interactome of HIV-1 Rev Includes RNA Helicases Involved in Multiple Facets of Virus Production

Souad Naji, Géza Ambrus, Peter Cimermančič, Jason R. Reyes, Jeffrey R. Johnson, Rebecca Filbrandt, Michael D. Huber, Paul Vesely, Nevan J. Krogan, John R. Yates, III, Andrew C. Saphire, Larry Gerace

Mol Cell Proteomics. 2012 Apr; 11(4): M111.015313. Published online 2011 Dec 15. doi: 10.1074/mcp.M111.015313

PMCID:: PMC3322577

Abstract Article PDF–1.4M

Select item 1094246715.

Mitochondrial Raf1 Regulates Glutamine Catabolism

Ronald L. Shanderson, Ian D. Ferguson, Zurab Siprashvili, Luca Ducoli, Albert M. Li, Weili Miao, Suhas Srinivasan, Mary Grace Velasco, Yang Li, Jiangbin Ye, Paul A. Khavari

Version 1. bioRxiv. Preprint. 2024 Mar 9. doi: 10.1101/2024.03.08.581297

PMCID:: PMC10942467

Abstract Article PDF–6.5M

Select item 396431016.

The functional interactome landscape of the human histone deacetylase family

Preeti Joshi, Todd M Greco, Amanda J Guise, Yang Luo, Fang Yu, Alexey I Nesvizhskii, Ileana M Cristea

Mol Syst Biol. 2013; 9: 672. Published online 2013 Jun 11. doi: 10.1038/msb.2013.26

PMCID:: PMC3964310

Abstract Article PDF–5.2M

Select item 623320517.

Proteome-wide analysis of USP14 substrates revealed its role in hepatosteatosis via stabilization of FASN

Bin Liu, Shangwen Jiang, Min Li, Xuelian Xiong, Mingrui Zhu, Duanzhuo Li, Lei Zhao, Lili Qian, Linhui Zhai, Jing Li, Han Lu, Shengnan Sun, Jiandie Lin, Yan Lu, Xiaoying Li, Minjia Tan

Nat Commun. 2018; 9: 4770. Published online 2018 Nov 13. doi: 10.1038/s41467-018-07185-y

PMCID:: PMC6233205

Abstract Article PDF–1.6M

Select item 435865918.

The functional interactome of PYHIN immune regulators reveals IFIX is a sensor of viral DNA

Benjamin A Diner, Tuo Li, Todd M Greco, Marni S Crow, John A Fuesler, Jennifer Wang, Ileana M Cristea

Mol Syst Biol. 2015 Feb; 11(2): 787. Published online 2015 Feb 9. doi: 10.15252/msb.20145808

PMCID:: PMC4358659

Abstract Article PDF–3.6M

Select item 44214719.

A Protein Interaction Framework for Human mRNA Degradation

Ben Lehner, Christopher M. Sanderson

Genome Res. 2004 Jul; 14(7): 1315–1323. doi: 10.1101/gr.2122004

PMCID:: PMC442147

Abstract Article PDF–272K

Select item 420025220.

Quantitative Lys-ϵ-Gly-Gly (diGly) Proteomics Coupled with Inducible RNAi Reveals Ubiquitin-mediated Proteolysis of DNA Damage-inducible Transcript 4 (DDIT4) by the E3 Ligase HUWE1

Joel W. Thompson, Jane Nagel, Sjouke Hoving, Bertran Gerrits, Andreas Bauer, Jason R. Thomas, Marc W. Kirschner, Markus Schirle, Sarah J. Luchansky

J Biol Chem. 2014 Oct 17; 289(42): 28942–28955. Published online 2014 Aug 21. doi: 10.1074/jbc.M114.573352

PMCID:: PMC4200252

Abstract Article PDF–1.6M

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