PMC Links for Gene (Select 84971) - PMC

Select item 62088411.

The Influence of Tumor Microenvironment on ATG4D Gene Expression in Colorectal Cancer Patients

Justyna Gil, David Ramsey, Pawel Pawlowski, Elzbieta Szmida, Przemyslaw Leszczynski, Marek Bebenek, Maria M. Sasiadek

Med Oncol. 2018; 35(12): 159. Published online 2018 Oct 29. doi: 10.1007/s12032-018-1220-6

PMCID:: PMC6208841

Abstract Article PDF–833K

Select item 34058412.

A cryptic mitochondrial targeting motif in Atg4D links caspase cleavage with mitochondrial import and oxidative stress

Virginie M.S. Betin, Thomas D.B. MacVicar, Stephen F. Parsons, David J. Anstee, Jon D. Lane

Autophagy. 2012 Apr 1; 8(4): 664–676. doi: 10.4161/auto.19227

PMCID:: PMC3405841

Abstract Article PDF–4.6M

Select item 36722973.

Autophagy facilitates organelle clearance during differentiation of human erythroblasts: Evidence for a role for ATG4 paralogs during autophagosome maturation

Virginie M.S. Betin, Belinda K. Singleton, Stephen F. Parsons, David J. Anstee, Jon D. Lane

Autophagy. 2013 Jun 1; 9(6): 881–893. Published online 2013 Mar 18. doi: 10.4161/auto.24172

PMCID:: PMC3672297

Abstract Article PDF–6.1M

Select item 65268164.

Redundancy of human ATG4 protease isoforms in autophagy and LC3/GABARAP processing revealed in cells

Alexander Agrotis, Niccolo Pengo, Jemima J. Burden, Robin Ketteler

Autophagy. 2019; 15(6): 976–997. Published online 2019 Feb 1. doi: 10.1080/15548627.2019.1569925

PMCID:: PMC6526816

Abstract Article PDF–5.4M

Select item 61034045.

Delipidation of mammalian Atg8-family proteins by each of the four ATG4 proteases

Karlina J. Kauffman, Shenliang Yu, Jiaxin Jin, Brian Mugo, Nathan Nguyen, Aidan O'Brien, Shanta Nag, Alf Håkon Lystad, Thomas J. Melia

Autophagy. 2018; 14(6): 992–1010. Published online 2018 Apr 10. doi: 10.1080/15548627.2018.1437341

PMCID:: PMC6103404

Abstract Article PDF–2.2M

Select item 27048866.

Caspase cleavage of Atg4D stimulates GABARAP-L1 processing and triggers mitochondrial targeting and apoptosis

Virginie M. S. Betin, Jon D. Lane

J Cell Sci. 2009 Jul 15; 122(14): 2554–2566. Published online 2009 Jun 23. doi: 10.1242/jcs.046250

PMCID:: PMC2704886

Abstract Article

Select item 30449897.

Kinetics Comparisons of Mammalian Atg4 Homologues Indicate Selective Preferences toward Diverse Atg8 Substrates

Min Li, Yifeng Hou, Jinsong Wang, Xiaoyun Chen, Zhi-Ming Shao, Xiao-Ming Yin

J Biol Chem. 2011 Mar 4; 286(9): 7327–7338. Published online 2010 Dec 22. doi: 10.1074/jbc.M110.199059

PMCID:: PMC3044989

Abstract Article PDF–1.8M

Select item 54460778.

ATG4B contains a C-terminal LIR motif important for binding and efficient cleavage of mammalian orthologs of yeast Atg8

Mads Skytte Rasmussen, Stéphane Mouilleron, Birendra Kumar Shrestha, Martina Wirth, Rebecca Lee, Kenneth Bowitz Larsen, Yakubu Abudu Princely, Nicola O'Reilly, Eva Sjøttem, Sharon A. Tooze, Trond Lamark, Terje Johansen

Autophagy. 2017; 13(5): 834–853. Published online 2017 Feb 15. doi: 10.1080/15548627.2017.1287651

PMCID:: PMC5446077

Abstract Article PDF–1.9M

Select item 73220679.

RIG-I regulates myeloid differentiation by promoting TRIM25-mediated ISGylation

Song-Fang Wu, Li Xia, Xiao-Dong Shi, Yu-Jun Dai, Wei-Na Zhang, Jun-Mei Zhao, Wu Zhang, Xiang-Qin Weng, Jing Lu, Huang-Ying Le, Sheng-ce Tao, Jiang Zhu, Zhu Chen, Yue-Ying Wang, Saijuan Chen

Proc Natl Acad Sci U S A. 2020 Jun 23; 117(25): 14395–14404. Published online 2020 Jun 8. doi: 10.1073/pnas.1918596117

PMCID:: PMC7322067

Abstract Article PDF–2.7M

Select item 464794110.

hORFeome v3.1: A resource of human open reading frames representing over 10,000 human genes

Philippe Lamesch, Ning Li, Stuart Milstein, Changyu Fan, Tong Hao, Gabor Szabo, Zhenjun Hu, Kavitha Venkatesan, Graeme Bethel, Paul Martin, Jane Rogers, Stephanie Lawlor, Stuart McLaren, Amélie Dricot, Heather Borick, Michael E. Cusick, Jean Vandenhaute, Ian Dunham, David E. Hill, Marc Vidal

Genomics. 2007 Mar; 89(3): 307–315. doi: 10.1016/j.ygeno.2006.11.012

PMCID:: PMC4647941

Abstract Article

Select item 911973611.

OpenCell: proteome-scale endogenous tagging enables the cartography of human cellular organization

Nathan H. Cho, Keith C. Cheveralls, Andreas-David Brunner, Kibeom Kim, André C. Michaelis, Preethi Raghavan, Hirofumi Kobayashi, Laura Savy, Jason Y. Li, Hera Canaj, James Y.S. Kim, Edna M. Stewart, Christian Gnann, Frank McCarthy, Joana P. Cabrera, Rachel M. Brunetti, Bryant B. Chhun, Greg Dingle, Marco Y. Hein, Bo Huang, Shalin B. Mehta, Jonathan S. Weissman, Rafael Gómez-Sjöberg, Daniel N. Itzhak, Loic A. Royer, Matthias Mann, Manuel D. Leonetti

Science. Author manuscript; available in PMC 2022 Sep 11.

Published in final edited form as: Science. 2022 Mar 11; 375(6585): eabi6983. Published online 2022 Mar 11. doi: 10.1126/science.abi6983

PMCID:: PMC9119736

Abstract Article PDF–3.3M

Select item 553161112.

Architecture of the human interactome defines protein communities and disease networks

Edward L. Huttlin, Raphael J. Bruckner, Joao A. Paulo, Joe R. Cannon, Lily Ting, Kurt Baltier, Greg Colby, Fana Gebreab, Melanie P. Gygi, Hannah Parzen, John Szpyt, Stanley Tam, Gabriela Zarraga, Laura Pontano-Vaites, Sharan Swarup, Anne E. White, Devin K. Schweppe, Ramin Rad, Brian K. Erickson, Robert A. Obar, K.G. Guruharsha, Kejie Li, Spyros Artavanis-Tsakonas, Steven P. Gygi, J. Wade Harper

Nature. Author manuscript; available in PMC 2017 Nov 17.

Published in final edited form as: Nature. 2017 May 25; 545(7655): 505–509. Published online 2017 May 17. doi: 10.1038/nature22366

PMCID:: PMC5531611

Abstract Article PDF–2.7M

Select item 816503013.

Dual Proteome-scale Networks Reveal Cell-specific Remodeling of the Human Interactome

Edward L. Huttlin, Raphael J. Bruckner, Jose Navarrete-Perea, Joe R. Cannon, Kurt Baltier, Fana Gebreab, Melanie P. Gygi, Alexandra Thornock, Gabriela Zarraga, Stanley Tam, John Szpyt, Brandon M. Gassaway, Alexandra Panov, Hannah Parzen, Sipei Fu, Arvene Golbazi, Eila Maenpaa, Keegan Stricker, Sanjukta Guha Thakurta, Tian Zhang, Ramin Rad, Joshua Pan, David P. Nusinow, Joao A. Paulo, Devin K. Schweppe, Laura Pontano Vaites, J. Wade Harper, Steven P. Gygi

Cell. Author manuscript; available in PMC 2022 May 27.

Published in final edited form as: Cell. 2021 May 27; 184(11): 3022–3040.e28. Published online 2021 May 6. doi: 10.1016/j.cell.2021.04.011

PMCID:: PMC8165030

Abstract Article PDF–2.2M

Select item 52892814.

The Status, Quality, and Expansion of the NIH Full-Length cDNA Project: The Mammalian Gene Collection (MGC)

Genome Res. 2004 Oct; 14(10b): 2121–2127. doi: 10.1101/gr.2596504

Correction in:: Genome Res. 2006 Jun; 16(6): 804.

PMCID:: PMC528928

Abstract Article PDF–140K

Select item 13924115.

Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences

Mammalian Gene Collection (MGC) Program Team

Proc Natl Acad Sci U S A. 2002 Dec 24; 99(26): 16899–16903. Published online 2002 Dec 11. doi: 10.1073/pnas.242603899

PMCID:: PMC139241

Abstract Article PDF–118K

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