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Select item 41187941.

Structure of Saccharomyces cerevisiae mitochondrial Qri7 in complex with AMP

Takumi Tominaga, Kan Kobayashi, Ryohei Ishii, Ryuichiro Ishitani, Osamu Nureki

Acta Crystallogr F Struct Biol Commun. 2014 Aug 1; 70(Pt 8): 1009–1014. Published online 2014 Jul 23. doi: 10.1107/S2053230X14014046

PMCID:: PMC4118794

Abstract Article PDF–1.0M

Select item 77182582.

A substrate binding model for the KEOPS tRNA modifying complex

Jonah Beenstock, Samara Mishelle Ona, Jennifer Porat, Stephen Orlicky, Leo C. K. Wan, Derek F. Ceccarelli, Pierre Maisonneuve, Rachel K. Szilard, Zhe Yin, Dheva Setiaputra, Daniel Y. L. Mao, Morgan Khan, Shaunak Raval, David C. Schriemer, Mark A. Bayfield, Daniel Durocher, Frank Sicheri

Nat Commun. 2020; 11: 6233. Published online 2020 Dec 4. doi: 10.1038/s41467-020-19990-5

PMCID:: PMC7718258

Abstract Article PDF–3.8M

Select item 30492073.

A role for the universal Kae1/Qri7/YgjD (COG0533) family in tRNA modification

Basma El Yacoubi, Isabelle Hatin, Christopher Deutsch, Tamer Kahveci, Jean-Pierre Rousset, Dirk Iwata-Reuyl, Alexey G Murzin, Valérie de Crécy-Lagard

EMBO J. 2011 Mar 2; 30(5): 882–893. Published online 2011 Feb 1. doi: 10.1038/emboj.2010.363

PMCID:: PMC3049207

Abstract Article PDF–1.2M

Select item 41876294.

Cross Kingdom Functional Conservation of the Core Universally Conserved Threonylcarbamoyladenosine tRNA Synthesis Enzymes

Patrick C. Thiaville, Basma El Yacoubi, Ludovic Perrochia, Arnaud Hecker, Magali Prigent, Jennifer J. Thiaville, Patrick Forterre, Olivier Namy, Tamara Basta, Valérie de Crécy-Lagard

Eukaryot Cell. 2014 Sep; 13(9): 1222–1231. doi: 10.1128/EC.00147-14

PMCID:: PMC4187629

Abstract Article PDF–1.4M

Select item 27607995.

Qri7/OSGEPL, the mitochondrial version of the universal Kae1/YgjD protein, is essential for mitochondrial genome maintenance

Jacques Oberto, Norman Breuil, Arnaud Hecker, Francesca Farina, Céline Brochier-Armanet, Emmanuel Culetto, Patrick Forterre

Nucleic Acids Res. 2009 Sep; 37(16): 5343–5352. Published online 2009 Jul 3. doi: 10.1093/nar/gkp557

PMCID:: PMC2760799

Abstract Article PDF–8.5M

Select item 36955236.

Reconstitution and characterization of eukaryotic N6-threonylcarbamoylation of tRNA using a minimal enzyme system

Leo C. K. Wan, Daniel Y. L. Mao, Dante Neculai, Jonathan Strecker, David Chiovitti, Igor Kurinov, Gennadiy Poda, Neroshan Thevakumaran, Fang Yuan, Rachel K. Szilard, Elena Lissina, Corey Nislow, Amy A. Caudy, Daniel Durocher, Frank Sicheri

Nucleic Acids Res. 2013 Jul; 41(12): 6332–6346. Published online 2013 Apr 25. doi: 10.1093/nar/gkt322

PMCID:: PMC3695523

Abstract Article PDF–6.4M

Select item 30492057.

The highly conserved KEOPS/EKC complex is essential for a universal tRNA modification, t6A

Madhusudhan Srinivasan, Preeti Mehta, Yao Yu, Evelyn Prugar, Eugene V Koonin, A Wali Karzai, Rolf Sternglanz

EMBO J. 2011 Mar 2; 30(5): 873–881. Published online 2010 Dec 24. doi: 10.1038/emboj.2010.343

PMCID:: PMC3049205

Abstract Article PDF–1.0M

Select item 65823558.

KEOPS complex promotes homologous recombination via DNA resection

Ming-Hong He, Jia-Cheng Liu, Yi-Si Lu, Zhi-Jing Wu, Ying-Ying Liu, Zhenfang Wu, Jing Peng, Jin-Qiu Zhou

Nucleic Acids Res. 2019 Jun 20; 47(11): 5684–5697. Published online 2019 Apr 2. doi: 10.1093/nar/gkz228

PMCID:: PMC6582355

Abstract Article PDF–2.8M

Select item 89346519.

Yeast Ssd1 is a non-enzymatic member of the RNase II family with an alternative RNA recognition site

Rosemary A Bayne, Uma Jayachandran, Aleksandra Kasprowicz, Stefan Bresson, David Tollervey, Edward W J Wallace, Atlanta G Cook

Nucleic Acids Res. 2022 Mar 21; 50(5): 2923–2937. Published online 2021 Jul 24. doi: 10.1093/nar/gkab615

PMCID:: PMC8934651

Abstract Article PDF–4.4M

Select item 628012410.

Recruitment of Cytosolic J-Proteins by TOM Receptors Promotes Mitochondrial Protein Biogenesis

Łukasz Opaliński, Jiyao Song, Chantal Priesnitz, Lena-Sophie Wenz, Silke Oeljeklaus, Bettina Warscheid, Nikolaus Pfanner, Thomas Becker

Cell Rep. 2018 Nov 20; 25(8): 2036–2043.e5. Published online 2018 Nov 20. doi: 10.1016/j.celrep.2018.10.083

PMCID:: PMC6280124

Abstract Article

Select item 441686411.

Mitochondrial Heat Shock Protein (Hsp) 70 and Hsp10 Cooperate in the Formation of Hsp60 Complexes

Lena Böttinger, Silke Oeljeklaus, Bernard Guiard, Sabine Rospert, Bettina Warscheid, Thomas Becker

J Biol Chem. 2015 May 1; 290(18): 11611–11622. Published online 2015 Mar 18. doi: 10.1074/jbc.M115.642017

PMCID:: PMC4416864

Abstract Article PDF–3.4M

Select item 629136612.

The cellular economy of the Saccharomyces cerevisiae zinc proteome

Yirong Wang, Erin Weisenhorn, Colin MacDiarmid, Claudia Andreini, Michael Bucci, Janet Taggart, Lucia Banci, Jason Russell, Joshua J. Coon, David J. Eide

Metallomics. Author manuscript; available in PMC 2019 Dec 12.

Published in final edited form as: Metallomics. 2018 Dec 12; 10(12): 1755–1776. doi: 10.1039/c8mt00269j

PMCID:: PMC6291366

Abstract Article PDF–3.0M

Select item 461603913.

Integrated multi-omics analyses reveal the pleiotropic nature of the control of gene expression by Puf3p

Christopher J. Kershaw, Joseph L. Costello, David Talavera, William Rowe, Lydia M. Castelli, Paul F. G. Sims, Christopher M. Grant, Mark P. Ashe, Simon J. Hubbard, Graham D. Pavitt

Sci Rep. 2015; 5: 15518. Published online 2015 Oct 23. doi: 10.1038/srep15518

PMCID:: PMC4616039

Abstract Article PDF–2.2M

Select item 308421314.

The Complete Spectrum of Yeast Chromosome Instability Genes Identifies Candidate CIN Cancer Genes and Functional Roles for ASTRA Complex Components

Peter C. Stirling, Michelle S. Bloom, Tejomayee Solanki-Patil, Stephanie Smith, Payal Sipahimalani, Zhijian Li, Megan Kofoed, Shay Ben-Aroya, Kyungjae Myung, Philip Hieter

PLoS Genet. 2011 Apr; 7(4): e1002057. Published online 2011 Apr 28. doi: 10.1371/journal.pgen.1002057

PMCID:: PMC3084213

Abstract Article PDF–710K

Select item 621571315.

Systematic Analysis of Complex Genetic Interactions

Elena Kuzmin, Benjamin VanderSluis, Wen Wang, Guihong Tan, Raamesh Deshpande, Yiqun Chen, Matej Usaj, Attila Balint, Mojca Mattiazzi Usaj, Jolanda van Leeuwen, Elizabeth N. Koch, Carles Pons, Andrius J. Dagilis, Michael Pryszlak, Jason Zi Yang Wang, Julia Hanchard, Margot Riggi, Kaicong Xu, Hamed Heydari, Bryan-Joseph San Luis, Ermira Shuteriqi, Hongwei Zhu, Nydia Van Dyk, Sara Sharifpoor, Michael Costanzo, Robbie Loewith, Amy Caudy, Daniel Bolnick, Grant W. Brown, Brenda J. Andrews, Charles Boone, Chad L. Myers

Science. Author manuscript; available in PMC 2018 Nov 4.

Published in final edited form as: Science. 2018 Apr 20; 360(6386): eaao1729. doi: 10.1126/science.aao1729

PMCID:: PMC6215713

Abstract Article PDF–1.9M

Select item 564803216.

Architecture and dynamics of overlapped RNA regulatory networks

Christopher P. Lapointe, Melanie A. Preston, Daniel Wilinski, Harriet A.J. Saunders, Zachary T. Campbell, Marvin Wickens

RNA. 2017 Nov; 23(11): 1636–1647. doi: 10.1261/rna.062687.117

PMCID:: PMC5648032

Abstract Article PDF–6.6M

Select item 470795217.

Protein-RNA networks revealed through covalent RNA marks

Christopher P. Lapointe, Daniel Wilinski, Harriet A. J. Saunders, Marvin Wickens

Nat Methods. Author manuscript; available in PMC 2016 May 18.

Published in final edited form as: Nat Methods. 2015 Dec; 12(12): 1163–1170. Published online 2015 Nov 2. doi: 10.1038/nmeth.3651

PMCID:: PMC4707952

Abstract Article PDF–856K

Select item 331716018.

Functional wiring of the yeast kinome revealed by global analysis of genetic network motifs

Sara Sharifpoor, Dewald van Dyk, Michael Costanzo, Anastasia Baryshnikova, Helena Friesen, Alison C. Douglas, Ji-Young Youn, Benjamin VanderSluis, Chad L. Myers, Balázs Papp, Charles Boone, Brenda J. Andrews

Genome Res. 2012 Apr; 22(4): 791–801. doi: 10.1101/gr.129213.111

PMCID:: PMC3317160

Abstract Article PDF–998K

Select item 520434819.

A novel translational control mechanism involving RNA structures within coding sequences

Jennifer Jungfleisch, Danny D. Nedialkova, Ivan Dotu, Katherine E. Sloan, Neus Martinez-Bosch, Lukas Brüning, Emanuele Raineri, Pilar Navarro, Markus T. Bohnsack, Sebastian A. Leidel, Juana Díez

Genome Res. 2017 Jan; 27(1): 95–106. doi: 10.1101/gr.209015.116

Correction in:: Genome Res. 2017 Apr; 27(4): 663.

PMCID:: PMC5204348

Abstract Article PDF–1.3M

Select item 771875120.

Comprehensive Synthetic Genetic Array Analysis of Alleles That Interact with Mutation of the Saccharomyces cerevisiae RecQ Helicases Hrq1 and Sgs1

Elsbeth Sanders, Phoebe A. Nguyen, Cody M. Rogers, Matthew L. Bochman

G3 (Bethesda) 2020 Dec; 10(12): 4359–4368. Published online 2020 Oct 28. doi: 10.1534/g3.120.401709

PMCID:: PMC7718751

Abstract Article PDF–1.2M

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