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Select item 29053821.

Mutations in MTO2 Related to tRNA Modification Impair Mitochondrial Gene Expression and Protein Synthesis in the Presence of a Paromomycin Resistance Mutation in Mitochondrial 15 S rRNA

Qingfeng Yan, Xiaoming Li, Gèrard Faye, Min-Xin Guan

J Biol Chem. Author manuscript; available in PMC 2010 Jul 16.

Published in final edited form as: J Biol Chem. 2005 Aug 12; 280(32): 29151–29157. Published online 2005 Jun 8. doi: 10.1074/jbc.M504247200

PMCID:: PMC2905382

Abstract Article PDF–925K

Select item 79712652.

tRNA-modifying enzyme mutations induce codon-specific mistranslation and protein aggregation in yeast

Joana F Tavares, Nick K. Davis, Ana Poim, Andreia Reis, Stefanie Kellner, Inês Sousa, Ana R. Soares, Gabriela M R Moura, Peter C Dedon, Manuel Santos

RNA Biol. 2021; 18(4): 563–575. Published online 2020 Sep 17. doi: 10.1080/15476286.2020.1819671

PMCID:: PMC7971265

Abstract Article PDF–5.8M

Select item 28186843.

Combination of the loss of cmnm⁵U34 with the lack of s²U₃₄ modifications of tRNA^Lys, tRNA^Glu and tRNA^Gln altered mitochondrial biogenesis and respiration

Xinjian Wang, Qingfeng Yan, Min-Xin Guan

J Mol Biol. Author manuscript; available in PMC 2011 Feb 5.

Published in final edited form as: J Mol Biol. 2010 Feb 5; 395(5): 1038. Published online 2009 Dec 11. doi: 10.1016/j.jmb.2009.12.002

PMCID:: PMC2818684

Abstract Article PDF–1.5M

Select item 38582544.

Nuclear Modifier MTO2 Modulates the Aminoglycoside-Sensitivity of Mitochondrial 15S rRNA C1477G Mutation in Saccharomyces cerevisiae

Xiangyu He, Xiaoyu Zhu, Xuexiang Wang, Wei Wang, Yu Dai, Qingfeng Yan

PLoS One. 2013; 8(12): e81490. Published online 2013 Dec 10. doi: 10.1371/journal.pone.0081490

PMCID:: PMC3858254

Abstract Article PDF–3.2M

Select item 1023955.

The COG database: a tool for genome-scale analysis of protein functions and evolution

Roman L. Tatusov, Michael Y. Galperin, Darren A. Natale, Eugene V. Koonin

Nucleic Acids Res. 2000 Jan 1; 28(1): 33–36. doi: 10.1093/nar/28.1.33

PMCID:: PMC102395

Abstract Article PDF–273K

Select item 5227896.

Genome-wide lethality screen identifies new PI4,5P₂ effectors that regulate the actin cytoskeleton

Anjon Audhya, Robbie Loewith, Ainslie B Parsons, Lu Gao, Mitsuaki Tabuchi, Huilin Zhou, Charles Boone, Michael N Hall, Scott D Emr

EMBO J. 2004 Sep 29; 23(19): 3747–3757. Published online 2004 Sep 16. doi: 10.1038/sj.emboj.7600384

PMCID:: PMC522789

Abstract Article PDF–359K

Select item 4275277.

Methylation of Histone H3 by Set2 in Saccharomyces cerevisiae Is Linked to Transcriptional Elongation by RNA Polymerase II

Nevan J. Krogan, Minkyu Kim, Amy Tong, Ashkan Golshani, Gerard Cagney, Veronica Canadien, Dawn P. Richards, Bryan K. Beattie, Andrew Emili, Charles Boone, Ali Shilatifard, Stephen Buratowski, Jack Greenblatt

Mol Cell Biol. 2003 Jun; 23(12): 4207–4218. doi: 10.1128/MCB.23.12.4207-4218.2003

PMCID:: PMC427527

Abstract Article PDF–806K

Select item 31344428.

Defining the Specificity of Cotranslationally Acting Chaperones by Systematic Analysis of mRNAs Associated with Ribosome-Nascent Chain Complexes

Marta del Alamo, Daniel J. Hogan, Sebastian Pechmann, Veronique Albanese, Patrick O. Brown, Judith Frydman

PLoS Biol. 2011 Jul; 9(7): e1001100. Published online 2011 Jul 12. doi: 10.1371/journal.pbio.1001100

PMCID:: PMC3134442

Abstract Article PDF–3.7M

Select item 70327329.

Skp, Cullin, F-box (SCF)-Met30 and SCF-Cdc4-Mediated Proteolysis of CENP-A Prevents Mislocalization of CENP-A for Chromosomal Stability in Budding Yeast

Wei-Chun Au, Tianyi Zhang, Prashant K. Mishra, Jessica R. Eisenstatt, Robert L. Walker, Josefina Ocampo, Anthony Dawson, Jack Warren, Michael Costanzo, Anastasia Baryshnikova, Karin Flick, David J. Clark, Paul S. Meltzer, Richard E. Baker, Chad Myers, Charles Boone, Peter Kaiser, Munira A. Basrai

PLoS Genet. 2020 Feb; 16(2): e1008597. Published online 2020 Feb 7. doi: 10.1371/journal.pgen.1008597

PMCID:: PMC7032732

Abstract Article PDF–3.9M

Select item 55409910.

An interactional network of genes involved in chitin synthesis in Saccharomyces cerevisiae

Guillaume Lesage, Jesse Shapiro, Charles A Specht, Anne-Marie Sdicu, Patrice Ménard, Shamiza Hussein, Amy Hin Yan Tong, Charles Boone, Howard Bussey

BMC Genet. 2005; 6: 8. Published online 2005 Feb 16. doi: 10.1186/1471-2156-6-8

PMCID:: PMC554099

Abstract Article PDF–2.7M

Select item 295043611.

Sulfate Assimilation Mediates Tellurite Reduction and Toxicity in Saccharomyces cerevisiae

Lars-Göran Ottosson, Katarina Logg, Sebastian Ibstedt, Per Sunnerhagen, Mikael Käll, Anders Blomberg, Jonas Warringer

Eukaryot Cell. 2010 Oct; 9(10): 1635–1647. doi: 10.1128/EC.00078-10

PMCID:: PMC2950436

Abstract Article PDF–3.2M

Select item 556293712.

Exploring Genetic Suppression Interactions on a Global Scale

Jolanda van Leeuwen, Carles Pons, Joseph C. Mellor, Takafumi N. Yamaguchi, Helena Friesen, John Koschwanez, Mojca Mattiazzi Ušaj, Maria Pechlaner, Mehmet Takar, Matej Ušaj, Benjamin VanderSluis, Kerry Andrusiak, Pritpal Bansal, Anastasia Baryshnikova, Claire Boone, Jessica Cao, Atina Cote, Marinella Gebbia, Gene Horecka, Ira Horecka, Elena Kuzmin, Nicole Legro, Wendy Liang, Natascha van Lieshout, Margaret McNee, Bryan-Joseph San Luis, Fatemeh Shaeri, Ermira Shuteriqi, Song Sun, Lu Yang, Ji-Young Youn, Michael Yuen, Michael Costanzo, Anne-Claude Gingras, Patrick Aloy, Chris Oostenbrink, Andrew Murray, Todd R. Graham, Chad L. Myers, Brenda J. Andrews, Frederick P. Roth, Charles Boone

Science. Author manuscript; available in PMC 2017 Aug 19.

Published in final edited form as: Science. 2016 Nov 4; 354(6312): aag0839. doi: 10.1126/science.aag0839

PMCID:: PMC5562937

Abstract Article PDF–2.5M

Select item 857691713.

Tubulin isotypes optimize distinct spindle positioning mechanisms during yeast mitosis

Emmanuel T. Nsamba, Abesh Bera, Michael Costanzo, Charles Boone, Mohan L. Gupta, Jr.

J Cell Biol. 2021 Dec 6; 220(12): e202010155. Published online 2021 Nov 5. doi: 10.1083/jcb.202010155

PMCID:: PMC8576917

Abstract Article PDF–7.4M

Select item 260095614.

A Genomewide Suppressor and Enhancer Analysis of cdc13-1 Reveals Varied Cellular Processes Influencing Telomere Capping in Saccharomyces cerevisiae

S. G. Addinall, M. Downey, M. Yu, M. K. Zubko, J. Dewar, A. Leake, J. Hallinan, O. Shaw, K. James, D. J. Wilkinson, A. Wipat, D. Durocher, D. Lydall

Genetics. 2008 Dec; 180(4): 2251–2266. doi: 10.1534/genetics.108.092577

PMCID:: PMC2600956

Abstract Article PDF–1.9M

Select item 240923415.

Association of yeast Upf1p with direct substrates of the NMD pathway

Marcus J. O. Johansson, Feng He, Phyllis Spatrick, Chunfang Li, Allan Jacobson

Proc Natl Acad Sci U S A. 2007 Dec 26; 104(52): 20872–20877. Published online 2007 Dec 17. doi: 10.1073/pnas.0709257105

PMCID:: PMC2409234

Abstract Article PDF–864K

Select item 1055170016.

Misregulation of cell cycle-dependent methylation of budding yeast CENP-A contributes to chromosomal instability

Prashant K. Mishra, Wei-Chun Au, Pedro G. Castineira, Nazrin Ali, John Stanton, Lars Boeckmann, Yoshimitsu Takahashi, Michael Costanzo, Charles Boone, Kerry S. Bloom, Peter H. Thorpe, Munira A. Basrai

Mol Biol Cell. 2023 Sep 1; 34(10): ar99. Published online 2023 Aug 17. doi: 10.1091/mbc.E23-03-0108

PMCID:: PMC10551700

Abstract Article PDF–3.7M

Select item 504769317.

Systematic identification of genes involved in metabolic acid stress resistance in yeast and their potential as cancer targets

John J. Shin, Qurratulain Aftab, Pamela Austin, Jennifer A. McQueen, Tak Poon, Shu Chen Li, Barry P. Young, Calvin D. Roskelley, Christopher J. R. Loewen

Dis Model Mech. 2016 Sep 1; 9(9): 1039–1049. doi: 10.1242/dmm.023374

PMCID:: PMC5047693

Abstract Article

Select item 249275118.

A comprehensive synthetic genetic interaction network governing yeast histone acetylation and deacetylation

Yu-yi Lin, Yan Qi, Jin-ying Lu, Xuewen Pan, Daniel S. Yuan, Yingming Zhao, Joel S. Bader, Jef D. Boeke

Genes Dev. 2008 Aug 1; 22(15): 2062–2074. doi: 10.1101/gad.1679508

PMCID:: PMC2492751

Abstract Article PDF–1.2M

Select item 461603919.

Integrated multi-omics analyses reveal the pleiotropic nature of the control of gene expression by Puf3p

Christopher J. Kershaw, Joseph L. Costello, David Talavera, William Rowe, Lydia M. Castelli, Paul F. G. Sims, Christopher M. Grant, Mark P. Ashe, Simon J. Hubbard, Graham D. Pavitt

Sci Rep. 2015; 5: 15518. Published online 2015 Oct 23. doi: 10.1038/srep15518

PMCID:: PMC4616039

Abstract Article PDF–2.2M

Select item 331716020.

Functional wiring of the yeast kinome revealed by global analysis of genetic network motifs

Sara Sharifpoor, Dewald van Dyk, Michael Costanzo, Anastasia Baryshnikova, Helena Friesen, Alison C. Douglas, Ji-Young Youn, Benjamin VanderSluis, Chad L. Myers, Balázs Papp, Charles Boone, Brenda J. Andrews

Genome Res. 2012 Apr; 22(4): 791–801. doi: 10.1101/gr.129213.111

PMCID:: PMC3317160

Abstract Article PDF–998K

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