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Items: 1 to 20 of 89

1.
The ASCC2 CUE domain in the ALKBH3–ASCC DNA repair complex recognizes adjacent ubiquitins in K63-linked polyubiquitin
Patrick M. Lombardi, Sara Haile, Timur Rusanov, Rebecca Rodell, Rita Anoh, Julia G. Baer, Kate A. Burke, Lauren N. Gray, Abigail R. Hacker, Kayla R. Kebreau, Christine K. Ngandu, Hannah A. Orland, Emmanuella Osei-Asante, Dhane P. Schmelyun, Devin E. Shorb, Shaheer H. Syed, Julianna M. Veilleux, Ananya Majumdar, Nima Mosammaparast, Cynthia Wolberger
J Biol Chem. 2022 Feb; 298(2): 101545. Published online 2021 Dec 28. doi: 10.1016/j.jbc.2021.101545
PMCID:
PMC8800115
AbstractArticlePDF–3.6M
2.
iDamage: a method to integrate modified DNA into the yeast genome
Katarzyna H Masłowska, Luisa Laureti, Vincent Pagès
Nucleic Acids Res. 2019 Nov 18; 47(20): e124. Published online 2019 Aug 16. doi: 10.1093/nar/gkz723
PMCID:
PMC6846816
AbstractArticlePDF–619K
3.
A spectrophotometric assay for conjugation of ubiquitin and ubiquitin-like proteins
Christopher E. Berndsen, Cynthia Wolberger
Anal Biochem. Author manuscript; available in PMC 2012 May 1.
Published in final edited form as: Anal Biochem. 2011 Nov 1; 418(1): 102–110. Published online 2011 Jul 2. doi: 10.1016/j.ab.2011.06.034
PMCID:
PMC3178097
AbstractArticlePDF–2.0M
4.
E2 Polyubiquitin-conjugating Enzyme Ubc13 in Keratinocytes Is Essential for Epidermal Integrity
Koji Sayama, Masahiro Yamamoto, Yuji Shirakata, Yasushi Hanakawa, Satoshi Hirakawa, Xiuju Dai, Mikiko Tohyama, Sho Tokumaru, Myoung-Sook Shin, Hiroaki Sakurai, Shizuo Akira, Koji Hashimoto
J Biol Chem. 2010 Sep 24; 285(39): 30042–30049. Published online 2010 Jul 27. doi: 10.1074/jbc.M110.106484
PMCID:
PMC2943323
AbstractArticlePDF–1.7M
5.
A method for labeling proteins with tags at the native genomic loci in budding yeast
Qian Wang, Huijun Xue, Siqi Li, Ying Chen, Xuelei Tian, Xin Xu, Wei Xiao, Yu Vincent Fu
PLoS One. 2017; 12(5): e0176184. Published online 2017 May 1. doi: 10.1371/journal.pone.0176184
PMCID:
PMC5411076
AbstractArticlePDF–14M
6.
Mms2-Ubc13-Dependent and -Independent Roles of Rad5 Ubiquitin Ligase in Postreplication Repair and Translesion DNA Synthesis in Saccharomyces cerevisiae
Venkateswarlu Gangavarapu, Lajos Haracska, Ildiko Unk, Robert E. Johnson, Satya Prakash, Louise Prakash
Mol Cell Biol. 2006 Oct; 26(20): 7783–7790. Published online 2006 Aug 14. doi: 10.1128/MCB.01260-06
PMCID:
PMC1636848
AbstractArticlePDF–310K
7.
Involvement of budding yeast Rad5 in translesion DNA synthesis through physical interaction with Rev1
Xin Xu, Aiyang Lin, Cuiyan Zhou, Susan R. Blackwell, Yiran Zhang, Zihao Wang, Qianqian Feng, Ruifang Guan, Michelle D. Hanna, Zhucheng Chen, Wei Xiao
Nucleic Acids Res. 2016 Jun 20; 44(11): 5231–5245. Published online 2016 Mar 21. doi: 10.1093/nar/gkw183
PMCID:
PMC4914093
AbstractArticlePDF–5.3M
8.
Constitutive fusion of ubiquitin to PCNA provides DNA damage tolerance independent of translesion polymerase activities
Landon Pastushok, Michelle Hanna, Wei Xiao
Nucleic Acids Res. 2010 Aug; 38(15): 5047–5058. Published online 2010 Apr 12. doi: 10.1093/nar/gkq239
PMCID:
PMC2926605
AbstractArticlePDF–4.8M
9.
Ubiquitin-dependent DNA damage bypass is separable from genome replication
Yasukazu Daigaku, Adelina A. Davies, Helle D. Ulrich
Nature. Author manuscript; available in PMC 2010 Dec 17.
Published in final edited form as: Nature. 2010 Jun 17; 465(7300): 951–955. Published online 2010 May 9. doi: 10.1038/nature09097
PMCID:
PMC2888004
AbstractArticlePDF–1.3M
10.
Both RAD5-dependent and independent pathways are involved in DNA damage-associated sister chromatid exchange in budding yeast
Michael T. Fasullo, Mingzeng Sun
AIMS Genet. 2017; 4(2): 84–102. Published online 2017 Mar 30. doi: 10.3934/genet.2017.2.84
PMCID:
PMC5460634
AbstractArticlePDF–611K
11.
Secondary structure is required for 3′ splice site recognition in yeast
Ondřej Gahura, Christian Hammann, Anna Valentová, František Půta, Petr Folk
Nucleic Acids Res. 2011 Dec; 39(22): 9759–9767. Published online 2011 Sep 5. doi: 10.1093/nar/gkr662
PMCID:
PMC3239191
AbstractArticlePDF–2.2M
12.
Structural and functional insights into the roles of the Mms21 subunit of the Smc5/6 complex
Xinyuan Duan, Prabha Sarangi, Xianpeng Liu, Gurdish K. Rangi, Xiaolan Zhao, Hong Ye
Mol Cell. Author manuscript; available in PMC 2010 Nov 29.
Published in final edited form as: Mol Cell. 2009 Sep 11; 35(5): 657–668. doi: 10.1016/j.molcel.2009.06.032
PMCID:
PMC2993495
AbstractArticlePDF–1.2M
13.
Synthesis of Free and Proliferating Cell Nuclear Antigen-bound Polyubiquitin Chains by the RING E3 Ubiquitin Ligase Rad5
Candice M. Carlile, Cecile M. Pickart, Michael J. Matunis, Robert E. Cohen
J Biol Chem. 2009 Oct 23; 284(43): 29326–29334. Published online 2009 Aug 25. doi: 10.1074/jbc.M109.043885
PMCID:
PMC2785563
AbstractArticlePDF–1.2M
14.
Yeast Chfr Homologs Retard Cell Cycle at G1 and G2/M via Ubc4 and Ubc13/Mms2-Dependent Ubiquitination
Greta L. Loring, Kathryn C. Christensen, Scott A. Gerber, Charles Brenner
Cell Cycle. Author manuscript; available in PMC 2008 Apr 11.
Published in final edited form as: Cell Cycle. 2008 Jan; 7(1): 96–105. Published online 2007 Oct 2. doi: 10.4161/cc.7.1.5113
PMCID:
PMC2292246
AbstractArticlePDF–1.6M
15.
The helicase Pif1 functions in the template switching pathway of DNA damage bypass
Néstor García-Rodríguez, Ronald P Wong, Helle D Ulrich
Nucleic Acids Res. 2018 Sep 19; 46(16): 8347–8356. Published online 2018 Aug 10. doi: 10.1093/nar/gky648
PMCID:
PMC6144865
AbstractArticlePDF–7.3M
16.
Mechanistic analysis of PCNA poly-ubiquitylation by the ubiquitin protein ligases Rad18 and Rad5
Joanne L Parker, Helle D Ulrich
EMBO J. 2009 Dec 2; 28(23): 3657–3666. Published online 2009 Oct 22. doi: 10.1038/emboj.2009.303
PMCID:
PMC2770100
AbstractArticlePDF–1.0M
17.
Two RING finger proteins mediate cooperation between ubiquitin-conjugating enzymes in DNA repair
Helle D. Ulrich, Stefan Jentsch
EMBO J. 2000 Jul 3; 19(13): 3388–3397. doi: 10.1093/emboj/19.13.3388
PMCID:
PMC313941
AbstractArticlePDF–841K
18.
Effects of chain length and geometry on the activation of DNA damage bypass by polyubiquitylated PCNA
Diane T Takahashi, Hans-Peter Wollscheid, Jonathan Lowther, Helle D Ulrich
Nucleic Acids Res. 2020 Apr 6; 48(6): 3042–3052. Published online 2020 Feb 3. doi: 10.1093/nar/gkaa053
Correction in:
Nucleic Acids Res. 2022 Jul 8; 50(12): 7197.
PMCID:
PMC7102961
AbstractArticlePDF–1.0M
19.
The Xanthomonas citri effector protein PthA interacts with citrus proteins involved in nuclear transport, protein folding and ubiquitination associated with DNA repair
MARIANE NORONHA DOMINGUES, TIAGO ANTONIO DE SOUZA, RAÚL ANDRÉS CERNADAS, MARIA LUIZA PEIXOTO DE OLIVEIRA, CÁSSIA DOCENA, CHUCK SHAKER FARAH, CELSO EDUARDO BENEDETTI
Mol Plant Pathol. 2010 Sep; 11(5): 663–675. Published online 2010 Jun 9. doi: 10.1111/j.1364-3703.2010.00636.x
PMCID:
PMC6640223
AbstractArticlePDF–932K
20.
RAD18 transmits DNA damage signaling to elicit homologous recombination repair
Jun Huang, Michael S. Y. Huen, Hongtae Kim, Charles Chung Yun Leung, J N Mark Glover, Xiaochun Yu, Junjie Chen
Nat Cell Biol. Author manuscript; available in PMC 2009 Nov 1.
Published in final edited form as: Nat Cell Biol. 2009 May; 11(5): 592–603. Published online 2009 Apr 26. doi: 10.1038/ncb1865
PMCID:
PMC2743127
AbstractArticlePDF–3.4M

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