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Select item 93851431.

A synthetic biology approach reveals diverse and dynamic CDK response profiles via multisite phosphorylation of NLS-NES modules

Ilona Faustova, Mihkel Örd, Viacheslav Kiselev, Dmytro Fedorenko, Irina Borovko, Dags Macs, Kaur Pääbo, Marko Lõoke, Mart Loog

Sci Adv. 2022 Aug; 8(33): eabp8992. Published online 2022 Aug 17. doi: 10.1126/sciadv.abp8992

PMCID:: PMC9385143

Abstract Article PDF–1.4M

Select item 102982862.

The Role of Chromatin Assembly Factors in Induced Mutagenesis at Low Levels of DNA Damage

Tatiyana A. Evstyukhina, Elena A. Alekseeva, Vyacheslav T. Peshekhonov, Irina I. Skobeleva, Dmitriy V. Fedorov, Vladimir G. Korolev

Genes (Basel) 2023 Jun; 14(6): 1242. Published online 2023 Jun 10. doi: 10.3390/genes14061242

PMCID:: PMC10298286

Abstract Article PDF–3.5M

Select item 26954043.

Systematic identification of cell cycle-dependent yeast nucleocytoplasmic shuttling proteins by prediction of composite motifs

Shunichi Kosugi, Masako Hasebe, Masaru Tomita, Hiroshi Yanagawa

Proc Natl Acad Sci U S A. 2009 Jun 23; 106(25): 10171–10176. Published online 2009 Jun 11. doi: 10.1073/pnas.0900604106

Correction in:: Proc Natl Acad Sci U S A. 2009 Aug 4; 106(31): 13142.

PMCID:: PMC2695404

Abstract Article PDF–679K

Select item 112293324.

Maf1 phosphorylation is regulated through the action of prefoldin-like Bud27 on PP4 phosphatase in Saccharomyces cerevisiae

Francisco Gutiérrez-Santiago, Verónica Martínez-Fernández, Ana Isabel Garrido-Godino, Cristina Colino-Palomino, Andrés Clemente-Blanco, Christine Conesa, Joël Acker, Francisco Navarro

Nucleic Acids Res. 2024 Jul 8; 52(12): 7081–7095. Published online 2024 May 27. doi: 10.1093/nar/gkae414

PMCID:: PMC11229332

Abstract Article PDF–1.9M

Select item 18904875.

Pph3–Psy2 is a phosphatase complex required for Rad53 dephosphorylation and replication fork restart during recovery from DNA damage

Bryan M. O'Neill, Shawn J. Szyjka, Ewa T. Lis, Aaron O. Bailey, John R. Yates, III, Oscar M. Aparicio, Floyd E. Romesberg

Proc Natl Acad Sci U S A. 2007 May 29; 104(22): 9290–9295. Published online 2007 May 21. doi: 10.1073/pnas.0703252104

PMCID:: PMC1890487

Abstract Article PDF–991K

Select item 22586076.

Identification of Genes Affecting Hydrogen Sulfide Formation in Saccharomyces cerevisiae

Angela L. Linderholm, Carrie L. Findleton, Gagandeep Kumar, Yeun Hong, Linda F. Bisson

Appl Environ Microbiol. 2008 Mar; 74(5): 1418–1427. Published online 2008 Jan 11. doi: 10.1128/AEM.01758-07

PMCID:: PMC2258607

Abstract Article PDF–197K

Select item 40652497.

Conditional Genetic Interactions of RTT107, SLX4, and HRQ1 Reveal Dynamic Networks upon DNA Damage in S. cerevisiae

Grace P. Leung, Maria J. Aristizabal, Nevan J. Krogan, Michael S. Kobor

G3 (Bethesda) 2014 Jun; 4(6): 1059–1069. Published online 2014 Apr 2. doi: 10.1534/g3.114.011205

PMCID:: PMC4065249

Abstract Article PDF–2.3M

Select item 54737558.

Mapping the Synthetic Dosage Lethality Network of CDK1/CDC28

Christine Zimmermann, Ignacio Garcia, Manja Omerzu, Pierre Chymkowitch, Beibei Zhang, Jorrit M. Enserink

G3 (Bethesda) 2017 Jun; 7(6): 1753–1766. Published online 2017 Apr 18. doi: 10.1534/g3.117.042317

Correction in:: G3 (Bethesda). 2019 Aug; 9(8): 2787.

PMCID:: PMC5473755

Abstract Article PDF–2.7M

Select item 51423809.

Functional characterisation of long intergenic non-coding RNAs through genetic interaction profiling in Saccharomyces cerevisiae

Dimitris Kyriakou, Emmanouil Stavrou, Panayiota Demosthenous, Georgia Angelidou, Bryan-Joseph San Luis, Charles Boone, Vasilis J. Promponas, Antonis Kirmizis

BMC Biol. 2016; 14: 106. Published online 2016 Dec 7. doi: 10.1186/s12915-016-0325-7

PMCID:: PMC5142380

Abstract Article PDF–1.2M

Select item 300618710.

Rewiring of Genetic Networks in Response to DNA Damage

Sourav Bandyopadhyay, Monika Mehta, Dwight Kuo, Min-Kyung Sung, Ryan Chuang, Eric J. Jaehnig, Bernd Bodenmiller, Katherine Licon, Wilbert Copeland, Michael Shales, Dorothea Fiedler, Janusz Dutkowski, Aude Guénolé, Haico van Attikum, Kevan M. Shokat, Richard D. Kolodner, Won-Ki Huh, Ruedi Aebersold, Michael-Christopher Keogh, Nevan J. Krogan, Trey Ideker

Science. Author manuscript; available in PMC 2010 Dec 21.

Published in final edited form as: Science. 2010 Dec 3; 330(6009): 1385–1389. doi: 10.1126/science.1195618

Correction in:: volume 331 on page 284

PMCID:: PMC3006187

Abstract Article PDF–1.9M

Select item 39555311.

Complete DNA sequence of yeast chromosome II.

H Feldmann, M Aigle, G Aljinovic, B André, M C Baclet, C Barthe, A Baur, A M Bécam, N Biteau, E Boles, et al.

EMBO J. 1994 Dec 15; 13(24): 5795–5809. doi: 10.1002/j.1460-2075.1994.tb06923.x

PMCID:: PMC395553

Summary Page Browse PDF–3.1M

Select item 285666612.

Functional Organization of the S. cerevisiae Phosphorylation Network

Dorothea Fiedler, Hannes Braberg, Monika Mehta, Gal Chechik, Gerard Cagney, Paromita Mukherjee, Andrea C. Silva, Michael Shales, Sean R. Collins, Sake van Wageningen, Patrick Kemmeren, Frank C. P. Holstege, Jonathan S. Weissman, Michael-Christopher Keogh, Daphne Koller, Kevan M. Shokat, Nevan J. Krogan

Cell. Author manuscript; available in PMC 2010 Apr 19.

Published in final edited form as: Cell. 2009 Mar 6; 136(5): 952–963. doi: 10.1016/j.cell.2008.12.039

PMCID:: PMC2856666

Abstract Article PDF–3.9M

Select item 271086213.

An atlas of chaperone–protein interactions in Saccharomyces cerevisiae: implications to protein folding pathways in the cell

Yunchen Gong, Yoshito Kakihara, Nevan Krogan, Jack Greenblatt, Andrew Emili, Zhaolei Zhang, Walid A Houry

Mol Syst Biol. 2009; 5: 275. Published online 2009 Jun 16. doi: 10.1038/msb.2009.26

PMCID:: PMC2710862

Abstract Article PDF–3.2M

Select item 727317714.

Chaperone-Mediated Protein Disaggregation Triggers Proteolytic Clearance of Intra-nuclear Protein Inclusions

Fabian den Brave, Lucas V. Cairo, Chandhuru Jagadeesan, Carmen Ruger-Herreros, Axel Mogk, Bernd Bukau, Stefan Jentsch

Cell Rep. 2020 Jun 2; 31(9): 107680. Published online 2020 Jun 2. doi: 10.1016/j.celrep.2020.107680

PMCID:: PMC7273177

Abstract Article

Select item 1023508615.

Rio1 downregulates centromeric RNA levels to promote the timely assembly of structurally fit kinetochores

Ksenia Smurova, Michela Damizia, Carmela Irene, Stefania Stancari, Giovanna Berto, Giulia Perticari, Maria Giuseppina Iacovella, Ilaria D’Ambrosio, Maria Giubettini, Réginald Philippe, Chiara Baggio, Elisabetta Callegaro, Andrea Casagranda, Alessandro Corsini, Vincenzo Gentile Polese, Anna Ricci, Erik Dassi, Peter De Wulf

Nat Commun. 2023; 14: 3172. Published online 2023 Jun 1. doi: 10.1038/s41467-023-38920-9

PMCID:: PMC10235086

Abstract Article PDF–2.6M

Select item 520924516.

A network of conserved synthetic lethal interactions for exploration of precision cancer therapy

Rohith Srivas, John Paul Shen, Chih Cheng Yang, Su Ming Sun, Jianfeng Li, Andrew M. Gross, James Jensen, Katherine Licon, Ana Bojorquez-Gomez, Kristin Klepper, Justin Huang, Daniel Pekin, Jia L. Xu, Huwate Yeerna, Vignesh Sivaganesh, Leonie Kollenstart, Haico van Attikum, Pedro Aza-Blanc, Robert W. Sobol, Trey Ideker

Mol Cell. Author manuscript; available in PMC 2017 Aug 4.

Published in final edited form as: Mol Cell. 2016 Aug 4; 63(3): 514–525. Published online 2016 Jul 21. doi: 10.1016/j.molcel.2016.06.022

PMCID:: PMC5209245

Abstract Article PDF–1.6M

Select item 376403617.

Genome-Wide Study of the Adaptation of Saccharomyces cerevisiae to the Early Stages of Wine Fermentation

Maite Novo, Ana Mangado, Manuel Quirós, Pilar Morales, Zoel Salvadó, Ramon Gonzalez

PLoS One. 2013; 8(9): e74086. Published online 2013 Sep 5. doi: 10.1371/journal.pone.0074086

PMCID:: PMC3764036

Abstract Article PDF–496K

Select item 3187518.

A comprehensive two-hybrid analysis to explore the yeast protein interactome

Takashi Ito, Tomoko Chiba, Ritsuko Ozawa, Mikio Yoshida, Masahira Hattori, Yoshiyuki Sakaki

Proc Natl Acad Sci U S A. 2001 Apr 10; 98(8): 4569–4574. Published online 2001 Mar 13. doi: 10.1073/pnas.061034498

PMCID:: PMC31875

Abstract Article PDF–110K

Select item 928602319.

Mediator recruits the cohesin loader Scc2 to RNA Pol II-transcribed genes and promotes sister chromatid cohesion

Mark Mattingly, Chris Seidel, Sofía Muñoz, Yan Hao, Ying Zhang, Zhihui Wen, Laurence Florens, Frank Uhlmann, Jennifer L. Gerton

Curr Biol. 2022 Jul 11; 32(13): 2884–2896.e6. doi: 10.1016/j.cub.2022.05.019

PMCID:: PMC9286023

Abstract Article

Select item 963098620.

A balancing act: interactions within NuA4/TIP60 regulate picNuA4 function in Saccharomyces cerevisiae and humans

Phoebe Y T Lu, Alyssa C Kirlin, Maria J Aristizabal, Hilary T Brewis, Nancy Lévesque, Dheva T Setiaputra, Nikita Avvakumov, Joris J Benschop, Marian Groot Koerkamp, Frank C P Holstege, Nevan J Krogan, Calvin K Yip, Jacques Côté, Michael S Kobor

Genetics. 2022 Nov; 222(3): iyac136. Published online 2022 Sep 6. doi: 10.1093/genetics/iyac136

PMCID:: PMC9630986

Abstract Article PDF–2.2M

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