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Items: 18

1.
Abundances of transcripts, proteins, and metabolites in the cell cycle of budding yeast reveal coordinate control of lipid metabolism
Heidi M. Blank, Ophelia Papoulas, Nairita Maitra, Riddhiman Garge, Brian K. Kennedy, Birgit Schilling, Edward M. Marcotte, Michael Polymenis
Mol Biol Cell. 2020 May 1; 31(10): 1069–1084. doi: 10.1091/mbc.E19-12-0708
PMCID:
PMC7346729
AbstractArticlePDF–1.9M
2.
Reversing the directionality of reactions between non-oxidative pentose phosphate pathway and glycolytic pathway boosts mycosporine-like amino acid production in Saccharomyces cerevisiae
Miselle Tiana Hengardi, Cui Liang, Keshiniy Madivannan, Lay Kien Yang, Lokanand Koduru, Yoganathan Kanagasundaram, Prakash Arumugam
Microb Cell Fact. 2024; 23: 121. Published online 2024 May 9. doi: 10.1186/s12934-024-02365-6
PMCID:
PMC11080194
AbstractArticlePDF–2.8M
3.
Heterologous xylose isomerase pathway and evolutionary engineering improve xylose utilization in Saccharomyces cerevisiae
Xin Qi, Jian Zha, Gao-Gang Liu, Weiwen Zhang, Bing-Zhi Li, Ying-Jin Yuan
Front Microbiol. 2015; 6: 1165. Published online 2015 Oct 21. doi: 10.3389/fmicb.2015.01165
PMCID:
PMC4612707
AbstractArticlePDF–1.9M
4.
Promoter decoding of transcription factor dynamics involves a trade-off between noise and control of gene expression
Anders S Hansen, Erin K O’Shea
Mol Syst Biol. 2013; 9: 704. Published online 2013 Nov 5. doi: 10.1038/msb.2013.56
PMCID:
PMC4039373
AbstractArticlePDF–1.6M
5.
Glucose depletion inhibits translation initiation via eIF4A loss and subsequent 48S preinitiation complex accumulation, while the pentose phosphate pathway is coordinately up-regulated
Lydia M. Castelli, Jennifer Lui, Susan G. Campbell, William Rowe, Leo A. H. Zeef, Leah E. A. Holmes, Nathaniel P. Hoyle, Jonathon Bone, Julian N. Selley, Paul F. G. Sims, Mark P. Ashe
Mol Biol Cell. 2011 Sep 15; 22(18): 3379–3393. doi: 10.1091/mbc.E11-02-0153
PMCID:
PMC3172263
AbstractArticlePDF–2.2M
6.
Low oxygen levels as a trigger for enhancement of respiratory metabolism in Saccharomyces cerevisiae
Eija Rintala, Mervi Toivari, Juha-Pekka Pitkänen, Marilyn G Wiebe, Laura Ruohonen, Merja Penttilä
BMC Genomics. 2009; 10: 461. Published online 2009 Oct 5. doi: 10.1186/1471-2164-10-461
PMCID:
PMC2767370
AbstractArticlePDF–1.3M
7.
The RAVE complex is an isoform-specific V-ATPase assembly factor in yeast
Anne M. Smardon, Heba I. Diab, Maureen Tarsio, Theodore T. Diakov, Negin Dehdar Nasab, Robert W. West, Patricia M. Kane
Mol Biol Cell. 2014 Feb 1; 25(3): 356–367. doi: 10.1091/mbc.E13-05-0231
PMCID:
PMC3907276
AbstractArticlePDF–1.2M
8.
Defining the Specificity of Cotranslationally Acting Chaperones by Systematic Analysis of mRNAs Associated with Ribosome-Nascent Chain Complexes
Marta del Alamo, Daniel J. Hogan, Sebastian Pechmann, Veronique Albanese, Patrick O. Brown, Judith Frydman
PLoS Biol. 2011 Jul; 9(7): e1001100. Published online 2011 Jul 12. doi: 10.1371/journal.pbio.1001100
PMCID:
PMC3134442
AbstractArticlePDF–3.7M
9.
Systems-level effects of allosteric perturbations to a model molecular switch
Tina Perica, Christopher J. P. Mathy, Jiewei Xu, Gwendolyn M. Jang, Yang Zhang, Robyn Kaake, Noah Ollikainen, Hannes Braberg, Danielle L. Swaney, David G. Lambright, Mark J. S. Kelly, Nevan J. Krogan, Tanja Kortemme
Nature. Author manuscript; available in PMC 2022 May 1.
Published in final edited form as: Nature. 2021 Nov; 599(7883): 152–157. Published online 2021 Oct 13. doi: 10.1038/s41586-021-03982-6
PMCID:
PMC8571063
AbstractArticlePDF–2.7M
10.
A Protein Interaction Map of the Mitotic Spindle
Jonathan Wong, Yuko Nakajima, Stefan Westermann, Ching Shang, Jung-seog Kang, Crystal Goodner, Pantea Houshmand, Stanley Fields, Clarence S.M. Chan, David Drubin, Georjana Barnes, Tony Hazbun
Mol Biol Cell. 2007 Oct; 18(10): 3800–3809. doi: 10.1091/mbc.E07-06-0536
PMCID:
PMC1995735
AbstractArticlePDF–796K
11.
The histone chaperone Spt6 is required for normal recruitment of the capping enzyme Abd1 to transcribed regions
Rajaraman Gopalakrishnan, Fred Winston
J Biol Chem. 2021 Oct; 297(4): 101205. Published online 2021 Sep 17. doi: 10.1016/j.jbc.2021.101205
PMCID:
PMC8511950
AbstractArticlePDF–3.1M
12.
Complete DNA sequence of yeast chromosome II.
H Feldmann, M Aigle, G Aljinovic, B André, M C Baclet, C Barthe, A Baur, A M Bécam, N Biteau, E Boles, et al.
EMBO J. 1994 Dec 15; 13(24): 5795–5809. doi: 10.1002/j.1460-2075.1994.tb06923.x
PMCID:
PMC395553
SummaryPage BrowsePDF–3.1M
13.
RNA-binding and prion domains: the Yin and Yang of phase separation
Nieves Lorenzo Gotor, Alexandros Armaos, Giulia Calloni, Marc Torrent Burgas, R Martin Vabulas, Natalia Sanchez De Groot, Gian Gaetano Tartaglia
Nucleic Acids Res. 2020 Sep 25; 48(17): 9491–9504. Published online 2020 Aug 28. doi: 10.1093/nar/gkaa681
PMCID:
PMC7515694
AbstractArticlePDF–3.1M
14.
An integrated approach to characterize genetic interaction networks in yeast metabolism
Balázs Szappanos, Károly Kovács, Béla Szamecz, Frantisek Honti, Michael Costanzo, Anastasia Baryshnikova, Gabriel Gelius-Dietrich, Martin J. Lercher, Márk Jelasity, Chad L. Myers, Brenda J. Andrews, Charles Boone, Stephen G. Oliver, Csaba Pál, Balázs Papp
Nat Genet. Author manuscript; available in PMC 2012 Jan 1.
Published in final edited form as: Nat Genet. 2011 Jul; 43(7): 656–662. Published online 2011 May 29. doi: 10.1038/ng.846
PMCID:
PMC3125439
AbstractArticlePDF–2.5M
15.
Distinct roles for Khd1p in the localization and expression of bud-localized mRNAs in yeast
Yuko Hasegawa, Kenji Irie, André P. Gerber
RNA. 2008 Nov; 14(11): 2333–2347. doi: 10.1261/rna.1016508
PMCID:
PMC2578860
AbstractArticlePDF–1.3M
16.
The social and structural architecture of the yeast protein interactome
André C. Michaelis, Andreas-David Brunner, Maximilian Zwiebel, Florian Meier, Maximilian T. Strauss, Isabell Bludau, Matthias Mann
Nature. 2023; 624(7990): 192–200. Published online 2023 Nov 15. doi: 10.1038/s41586-023-06739-5
PMCID:
PMC10700138
AbstractArticlePDF–20M
17.
A global interaction network maps a wiring diagram of cellular function
Michael Costanzo, Benjamin VanderSluis, Elizabeth N. Koch, Anastasia Baryshnikova, Carles Pons, Guihong Tan, Wen Wang, Matej Usaj, Julia Hanchard, Susan D. Lee, Vicent Pelechano, Erin B. Styles, Maximilian Billmann, Jolanda van Leeuwen, Nydia van Dyk, Zhen-Yuan Lin, Elena Kuzmin, Justin Nelson, Jeff S. Piotrowski, Tharan Srikumar, Sondra Bahr, Yiqun Chen, Raamesh Deshpande, Christoph F. Kurat, Sheena C. Li, Zhijian Li, Mojca Mattiazzi Usaj, Hiroki Okada, Natasha Pascoe, Bryan-Joseph San Luis, Sara Sharifpoor, Emira Shuteriqi, Scott W. Simpkins, Jamie Snider, Harsha Garadi Suresh, Yizhao Tan, Hongwei Zhu, Noel Malod-Dognin, Vuk Janjic, Natasa Przulj, Olga G. Troyanskaya, Igor Stagljar, Tian Xia, Yoshikazu Ohya, Anne-Claude Gingras, Brian Raught, Michael Boutros, Lars M. Steinmetz, Claire L. Moore, Adam P. Rosebrock, Amy A. Caudy, Chad L. Myers, Brenda Andrews, Charles Boone
Science. Author manuscript; available in PMC 2017 Oct 30.
Published in final edited form as: Science. 2016 Sep 23; 353(6306): aaf1420. doi: 10.1126/science.aaf1420
PMCID:
PMC5661885
AbstractArticlePDF–2.6M
18.
New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources
Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry
Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224
PMCID:
PMC9209811
AbstractArticlePDF–818K

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