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Items: 19

1.
Genetic re-engineering of polyunsaturated phospholipid profile of Saccharomyces cerevisiae identifies a novel role for Cld1 in mitigating the effects of cardiolipin peroxidation
Wenjia Lou, Hsiu-Chi Ting, Christian A. Reynolds, Yulia Y. Tyurina, Vladimir A. Tyurin, Yiran Li, Jiajia Ji, Wenxi Yu, Zhuqing Liang, Detcho A. Stoyanovsky, Tamil S. Anthonymuthu, Michael A. Frasso, Peter Wipf, Joel S. Greenberger, Hülya Bayir, Valerian E. Kagan, Miriam L. Greenberg
Biochim Biophys Acta Mol Cell Biol Lipids. Author manuscript; available in PMC 2019 Oct 1.
Published in final edited form as: Biochim Biophys Acta Mol Cell Biol Lipids. 2018 Oct; 1863(10): 1354–1368. Published online 2018 Jun 20. doi: 10.1016/j.bbalip.2018.06.016
PMCID:
PMC6641546
AbstractArticlePDF–3.0M
2.
Lipidomics Characterization of Biosynthetic and Remodeling Pathways of Cardiolipins in Genetically and Nutritionally Manipulated Yeast Cells
Yulia Y. Tyurina, Wenjia Lou, Feng Qu, Vladimir A Tyurin, Dariush Mohammadyani, Jenney Liu, Maik Hüttemann, Michael A. Frasso, Peter Wipf, Hülya Bayir, Miriam. L. Greenberg, Valerian E. Kagan
ACS Chem Biol. Author manuscript; available in PMC 2017 Aug 31.
Published in final edited form as: ACS Chem Biol. 2017 Jan 20; 12(1): 265–281. Published online 2016 Dec 16. doi: 10.1021/acschembio.6b00995
PMCID:
PMC5578713
AbstractArticlePDF–1.4M
3.
CLD1 Reverses the Ubiquinone Insufficiency of Mutant cat5/coq7 in a Saccharomyces cerevisiae Model System
Adwitiya Kar, Haley Beam, Megan B. Borror, Michael Luckow, Xiaoli Gao, Shane L. Rea
PLoS One. 2016; 11(9): e0162165. Published online 2016 Sep 7. doi: 10.1371/journal.pone.0162165
PMCID:
PMC5014327
AbstractArticlePDF–3.7M
4.
Deletion of the Cardiolipin-specific Phospholipase Cld1 Rescues Growth and Life Span Defects in the Tafazzin Mutant: IMPLICATIONS FOR BARTH SYNDROME
Cunqi Ye, Wenjia Lou, Yiran Li, Iliana A. Chatzispyrou, Maik Hüttemann, Icksoo Lee, Riekelt H. Houtkooper, Frédéric M. Vaz, Shuliang Chen, Miriam L. Greenberg
J Biol Chem. 2014 Feb 7; 289(6): 3114–3125. Published online 2013 Dec 8. doi: 10.1074/jbc.M113.529487
PMCID:
PMC3916517
AbstractArticlePDF–1.0M
5.
Deacylation on the matrix side of the mitochondrial inner membrane regulates cardiolipin remodeling
Matthew G. Baile, Kevin Whited, Steven M. Claypool
Mol Biol Cell. 2013 Jun 15; 24(12): 2008–2020. doi: 10.1091/mbc.E13-03-0121
PMCID:
PMC3681703
AbstractArticlePDF–5.1M
6.
Identification of a Cardiolipin-specific Phospholipase Encoded by the Gene CLD1 (YGR110W) in Yeast
Andreas Beranek, Gerald Rechberger, Heide Knauer, Heimo Wolinski, Sepp. D. Kohlwein, Regina Leber
J Biol Chem. 2009 Apr 24; 284(17): 11572–11578. doi: 10.1074/jbc.M805511200
PMCID:
PMC2670162
AbstractArticlePDF–453K
7.
Unremodeled and Remodeled Cardiolipin Are Functionally Indistinguishable in Yeast
Matthew G. Baile, Murugappan Sathappa, Ya-Wen Lu, Erin Pryce, Kevin Whited, J. Michael McCaffery, Xianlin Han, Nathan N. Alder, Steven M. Claypool
J Biol Chem. 2014 Jan 17; 289(3): 1768–1778. Published online 2013 Nov 27. doi: 10.1074/jbc.M113.525733
PMCID:
PMC3894353
AbstractArticlePDF–2.9M
8.
Misregulation of a DDHD Domain-containing Lipase Causes Mitochondrial Dysfunction in Yeast
Pradeep Kumar Yadav, Ram Rajasekharan
J Biol Chem. 2016 Aug 26; 291(35): 18562–18581. Published online 2016 Jul 8. doi: 10.1074/jbc.M116.733378
PMCID:
PMC5000100
AbstractArticlePDF–3.4M
9.
Chromatin-Associated Genes Protect the Yeast Genome From Ty1 Insertional Mutagenesis
Katherine M. Nyswaner, Mary Ann Checkley, Ming Yi, Robert M. Stephens, David J. Garfinkel
Genetics. 2008 Jan; 178(1): 197–214. doi: 10.1534/genetics.107.082602
PMCID:
PMC2206071
AbstractArticlePDF–1.2M
10.
Assembly of the complexes of oxidative phosphorylation triggers the remodeling of cardiolipin
Yang Xu, Murari Anjaneyulu, Alec Donelian, Wenxi Yu, Miriam L. Greenberg, Mindong Ren, Edward Owusu-Ansah, Michael Schlame
Proc Natl Acad Sci U S A. 2019 Jun 4; 116(23): 11235–11240. Published online 2019 May 20. doi: 10.1073/pnas.1900890116
PMCID:
PMC6561273
AbstractArticlePDF–1.0M
11.
Revising the Representation of Fatty Acid, Glycerolipid, and Glycerophospholipid Metabolism in the Consensus Model of Yeast Metabolism
Hnin W. Aung, Susan A. Henry, Larry P. Walker
Ind Biotechnol (New Rochelle N Y) 2013 Aug; 9(4): 215–228. doi: 10.1089/ind.2013.0013
PMCID:
PMC3963290
AbstractArticlePDF–906K
12.
The Yeast Ess1 Prolyl Isomerase Controls Swi6 and Whi5 Nuclear Localization
David Atencio, Cassandra Barnes, Thomas M. Duncan, Ian M. Willis, Steven D. Hanes
G3 (Bethesda) 2014 Mar; 4(3): 523–537. Published online 2014 Jan 27. doi: 10.1534/g3.113.008763
PMCID:
PMC3962490
AbstractArticlePDF–2.3M
13.
Mitochondrial Heat Shock Protein (Hsp) 70 and Hsp10 Cooperate in the Formation of Hsp60 Complexes
Lena Böttinger, Silke Oeljeklaus, Bernard Guiard, Sabine Rospert, Bettina Warscheid, Thomas Becker
J Biol Chem. 2015 May 1; 290(18): 11611–11622. Published online 2015 Mar 18. doi: 10.1074/jbc.M115.642017
PMCID:
PMC4416864
AbstractArticlePDF–3.4M
14.
A comprehensive two-hybrid analysis to explore the yeast protein interactome
Takashi Ito, Tomoko Chiba, Ritsuko Ozawa, Mikio Yoshida, Masahira Hattori, Yoshiyuki Sakaki
Proc Natl Acad Sci U S A. 2001 Apr 10; 98(8): 4569–4574. Published online 2001 Mar 13. doi: 10.1073/pnas.061034498
PMCID:
PMC31875
AbstractArticlePDF–110K
15.
The Yeast SR-Like Protein Npl3 Links Chromatin Modification to mRNA Processing
Erica A. Moehle, Colm J. Ryan, Nevan J. Krogan, Tracy L. Kress, Christine Guthrie
PLoS Genet. 2012 Nov; 8(11): e1003101. Published online 2012 Nov 29. doi: 10.1371/journal.pgen.1003101
PMCID:
PMC3510044
AbstractArticlePDF–3.4M
16.
Purification of Nuclear Poly(A)-binding Protein Nab2 Reveals Association with the Yeast Transcriptome and a Messenger Ribonucleoprotein Core Structure
Julien Batisse, Claire Batisse, Aidan Budd, Bettina Böttcher, Ed Hurt
J Biol Chem. 2009 Dec 11; 284(50): 34911–34917. Published online 2009 Oct 19. doi: 10.1074/jbc.M109.062034
PMCID:
PMC2787353
AbstractArticlePDF–3.8M
17.
The Genetic Landscape of a Cell
Michael Costanzo, Anastasia Baryshnikova, Jeremy Bellay, Yungil Kim, Eric D. Spear, Carolyn S. Sevier, Huiming Ding, Judice L.Y. Koh, Kiana Toufighi, Sara Mostafavi, Jeany Prinz, Robert P. St. Onge, Benjamin VanderSluis, Taras Makhnevych, Franco J. Vizeacoumar, Solmaz Alizadeh, Sondra Bahr, Renee L. Brost, Yiqun Chen, Murat Cokol, Raamesh Deshpande, Zhijian Li, Zhen-Yuan Lin, Wendy Liang, Michaela Marback, Jadine Paw, Bryan-Joseph San Luis, Ermira Shuteriqi, Amy Hin Yan Tong, Nydia van Dyk, Iain M. Wallace, Joseph A. Whitney, Matthew T. Weirauch, Guoqing Zhong, Hongwei Zhu, Walid A. Houry, Michael Brudno, Sasan Ragibizadeh, Balázs Papp, Csaba Pál, Frederick P. Roth, Guri Giaever, Corey Nislow, Olga G. Troyanskaya, Howard Bussey, Gary D. Bader, Anne-Claude Gingras, Quaid D. Morris, Philip M. Kim, Chris A. Kaiser, Chad L. Myers, Brenda J. Andrews, Charles Boone
Science. Author manuscript; available in PMC 2017 Sep 15.
Published in final edited form as: Science. 2010 Jan 22; 327(5964): 425–431. doi: 10.1126/science.1180823
PMCID:
PMC5600254
AbstractArticlePDF–2.4M
18.
A global interaction network maps a wiring diagram of cellular function
Michael Costanzo, Benjamin VanderSluis, Elizabeth N. Koch, Anastasia Baryshnikova, Carles Pons, Guihong Tan, Wen Wang, Matej Usaj, Julia Hanchard, Susan D. Lee, Vicent Pelechano, Erin B. Styles, Maximilian Billmann, Jolanda van Leeuwen, Nydia van Dyk, Zhen-Yuan Lin, Elena Kuzmin, Justin Nelson, Jeff S. Piotrowski, Tharan Srikumar, Sondra Bahr, Yiqun Chen, Raamesh Deshpande, Christoph F. Kurat, Sheena C. Li, Zhijian Li, Mojca Mattiazzi Usaj, Hiroki Okada, Natasha Pascoe, Bryan-Joseph San Luis, Sara Sharifpoor, Emira Shuteriqi, Scott W. Simpkins, Jamie Snider, Harsha Garadi Suresh, Yizhao Tan, Hongwei Zhu, Noel Malod-Dognin, Vuk Janjic, Natasa Przulj, Olga G. Troyanskaya, Igor Stagljar, Tian Xia, Yoshikazu Ohya, Anne-Claude Gingras, Brian Raught, Michael Boutros, Lars M. Steinmetz, Claire L. Moore, Adam P. Rosebrock, Amy A. Caudy, Chad L. Myers, Brenda Andrews, Charles Boone
Science. Author manuscript; available in PMC 2017 Oct 30.
Published in final edited form as: Science. 2016 Sep 23; 353(6306): aaf1420. doi: 10.1126/science.aaf1420
PMCID:
PMC5661885
AbstractArticlePDF–2.6M
19.
New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources
Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry
Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224
PMCID:
PMC9209811
AbstractArticlePDF–818K

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