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Items: 1 to 20 of 31

1.
DEAH-box ATPase Prp16 has dual roles in remodeling of the spliceosome in catalytic steps
Chi-Kang Tseng, Hsueh-Lien Liu, Soo-Chen Cheng
RNA. 2011 Jan; 17(1): 145–154. doi: 10.1261/rna.2459611
PMCID:
PMC3004056
AbstractArticlePDF–625K
2.
Structural basis for conformational equilibrium of the catalytic spliceosome
Max E. Wilkinson, Sebastian M. Fica, Wojciech P. Galej, Kiyoshi Nagai
Mol Cell. 2021 Apr 1; 81(7): 1439–1452.e9. doi: 10.1016/j.molcel.2021.02.021
PMCID:
PMC8022279
AbstractArticle
3.
A central role of Cwc25 in spliceosome dynamics during the catalytic phase of pre-mRNA splicing
Chi-Kang Tseng, Che-Sheng Chung, Hsin-Chou Chen, Soo-Chen Cheng
RNA. 2017 Apr; 23(4): 546–556. doi: 10.1261/rna.059204.116
PMCID:
PMC5340917
AbstractArticlePDF–751K
4.
Post-catalytic spliceosome structure reveals mechanism of 3'-splice site selection
Max E. Wilkinson, Sebastian M. Fica, Wojciech P. Galej, Christine M. Norman, Andrew J. Newman, Kiyoshi Nagai
Science. Author manuscript; available in PMC 2018 Jun 8.
Published in final edited form as: Science. 2017 Dec 8; 358(6368): 1283–1288. Published online 2017 Nov 16. doi: 10.1126/science.aar3729
PMCID:
PMC5808836
AbstractArticlePDF–2.0M
5.
A Weak Spliceosome-Binding Domain of Yju2 Functions in the First Step and Bypasses Prp16 in the Second Step of Splicing
Ting-Wei Chiang, Soo-Chen Cheng
Mol Cell Biol. 2013 May; 33(9): 1746–1755. doi: 10.1128/MCB.00035-13
PMCID:
PMC3624177
AbstractArticlePDF–1.3M
6.
Cwc25 Is a Novel Splicing Factor Required after Prp2 and Yju2 To Facilitate the First Catalytic Reaction
Ying-Fang Chiu, Yen-Chi Liu, Ting-Wei Chiang, Tzu-Chi Yeh, Chi-Kang Tseng, Nan-Ying Wu, Soo-Chen Cheng
Mol Cell Biol. 2009 Nov; 29(21): 5671–5678. Published online 2009 Aug 24. doi: 10.1128/MCB.00773-09
PMCID:
PMC2772750
AbstractArticlePDF–844K
7.
A Novel Splicing Factor, Yju2, Is Associated with NTC and Acts after Prp2 in Promoting the First Catalytic Reaction of Pre-mRNA Splicing
Yen-Chi Liu, Hsin-Chou Chen, Nan-Ying Wu, Soo-Chen Cheng
Mol Cell Biol. 2007 Aug; 27(15): 5403–5413. Published online 2007 May 21. doi: 10.1128/MCB.00346-07
PMCID:
PMC1952081
AbstractArticlePDF–559K
8.
Ntc90 is required for recruiting first step factor Yju2 but not for spliceosome activation
Kae-Jiun Chang, Hsin-Chou Chen, Soo-Chen Cheng
RNA. 2009 Sep; 15(9): 1729–1739. doi: 10.1261/rna.1625309
PMCID:
PMC2743064
AbstractArticlePDF–571K
9.
A termination-independent role of Rat1 in cotranscriptional splicing
Zuzer Dhoondia, Hesham Elewa, Marva Malik, Zahidur Arif, Roger Pique-Regi, Athar Ansari
Nucleic Acids Res. 2021 Jun 4; 49(10): 5520–5536. Published online 2021 May 12. doi: 10.1093/nar/gkab339
PMCID:
PMC8191773
AbstractArticlePDF–6.5M
10.
Structural requirement of Ntc77 for spliceosome activation and first catalytic step
Hsin-Chou Chen, Kae-Jiun Chang, Yu-Lun Su, Yu-Hsin Huang, Soo-Chen Cheng
Nucleic Acids Res. 2014 Oct 29; 42(19): 12261–12271. Published online 2014 Oct 7. doi: 10.1093/nar/gku914
PMCID:
PMC4231770
AbstractArticlePDF–3.5M
11.
Decrypting the Information Exchange Pathways across the Spliceosome Machinery
Andrea Saltalamacchia, Lorenzo Casalino, Jure Borišek, Victor S. Batista, Ivan Rivalta, Alessandra Magistrato
J Am Chem Soc. Author manuscript; available in PMC 2020 Jul 7.
Published in final edited form as: J Am Chem Soc. 2020 May 6; 142(18): 8403–8411. Published online 2020 Apr 22. doi: 10.1021/jacs.0c02036
PMCID:
PMC7339022
AbstractArticlePDF–1.8M
12.
Predicting protein functions from redundancies in large-scale protein interaction networks
Manoj Pratim Samanta, Shoudan Liang
Proc Natl Acad Sci U S A. 2003 Oct 28; 100(22): 12579–12583. Published online 2003 Oct 17. doi: 10.1073/pnas.2132527100
PMCID:
PMC240660
AbstractArticlePDF–350K
13.
A systematic characterization of Cwc21, the yeast ortholog of the human spliceosomal protein SRm300
May Khanna, Harm Van Bakel, Xinyi Tang, John A. Calarco, Tomas Babak, Grace Guo, Andrew Emili, Jack F. Greenblatt, Timothy R. Hughes, Nevan J. Krogan, Benjamin J. Blencowe
RNA. 2009 Dec; 15(12): 2174–2185. doi: 10.1261/rna.1790509
PMCID:
PMC2779666
AbstractArticlePDF–974K
14.
Release of SF3 from the intron branchpoint activates the first step of pre-mRNA splicing
Rea M. Lardelli, James X. Thompson, John R. Yates, III, Scott W. Stevens
RNA. 2010 Mar; 16(3): 516–528. doi: 10.1261/rna.2030510
PMCID:
PMC2822917
AbstractArticlePDF–1.1M
15.
Proteomics Analysis Reveals Stable Multiprotein Complexes in Both Fission and Budding Yeasts Containing Myb-Related Cdc5p/Cef1p, Novel Pre-mRNA Splicing Factors, and snRNAs
Melanie D. Ohi, Andrew J. Link, Liping Ren, Jennifer L. Jennings, W. Hayes McDonald, Kathleen L. Gould
Mol Cell Biol. 2002 Apr; 22(7): 2011–2024. doi: 10.1128/MCB.22.7.2011-2024.2002
PMCID:
PMC133674
AbstractArticlePDF–665K
16.
Composition of yeast snRNPs and snoRNPs in the absence of trimethylguanosine caps reveals nuclear cap binding protein as a gained U1 component implicated in the cold-sensitivity of tgs1Δ cells
Beate Schwer, Hediye Erdjument-Bromage, Stewart Shuman
Nucleic Acids Res. 2011 Aug; 39(15): 6715–6728. Published online 2011 May 10. doi: 10.1093/nar/gkr279
PMCID:
PMC3159458
AbstractArticlePDF–8.4M
17.
Sumoylation of the THO complex regulates the biogenesis of a subset of mRNPs
Hugo Bretes, Jérôme O. Rouviere, Thibaut Leger, Marlene Oeffinger, Frédéric Devaux, Valérie Doye, Benoit Palancade
Nucleic Acids Res. 2014 Apr; 42(8): 5043–5058. Published online 2014 Feb 5. doi: 10.1093/nar/gku124
PMCID:
PMC4005672
AbstractArticlePDF–8.1M
18.
ISW1a modulates cohesin distribution in centromeric and pericentromeric regions
Ireneusz Litwin, Małgorzata Nowicka, Katarzyna Markowska, Ewa Maciaszczyk-Dziubińska, Paulina Tomaszewska, Robert Wysocki, Karol Kramarz
Nucleic Acids Res. 2023 Sep 22; 51(17): 9101–9121. Published online 2023 Jul 24. doi: 10.1093/nar/gkad612
PMCID:
PMC10516642
AbstractArticlePDF–2.8M
19.
RNA-binding and prion domains: the Yin and Yang of phase separation
Nieves Lorenzo Gotor, Alexandros Armaos, Giulia Calloni, Marc Torrent Burgas, R Martin Vabulas, Natalia Sanchez De Groot, Gian Gaetano Tartaglia
Nucleic Acids Res. 2020 Sep 25; 48(17): 9491–9504. Published online 2020 Aug 28. doi: 10.1093/nar/gkaa681
PMCID:
PMC7515694
AbstractArticlePDF–3.1M
20.
TORC1-dependent sumoylation of Rpc82 promotes RNA polymerase III assembly and activity
Pierre Chymkowitch, Aurélie Nguéa P, Håvard Aanes, Joseph Robertson, Arne Klungland, Jorrit M. Enserink
Proc Natl Acad Sci U S A. 2017 Jan 31; 114(5): 1039–1044. Published online 2017 Jan 17. doi: 10.1073/pnas.1615093114
PMCID:
PMC5293095
AbstractArticlePDF–1.0M

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