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Items: 1 to 20 of 81

1.
Yeast RNA polymerase II subunit RPB11 is related to a subunit shared by RNA polymerase I and III
Nancy A. Woychik, Keith McKune, William S. Lane, Richard A. Young
Gene Expr. 1993; 3(1): 77–82. Published online 2018 Aug 8.
PMCID:
PMC6081621
AbstractArticlePDF–1.6M
2.
cis- and trans-Acting Determinants of Transcription Termination by Yeast RNA Polymerase II
Eric J. Steinmetz, Sarah B. H. Ng, Joseph P. Cloute, David A. Brow
Mol Cell Biol. 2006 Apr; 26(7): 2688–2696. doi: 10.1128/MCB.26.7.2688-2696.2006
PMCID:
PMC1430333
AbstractArticlePDF–514K
3.
Distinct regions of RPB11 are required for heterodimerization with RPB3 in human and yeast RNA polymerase II
Wagane J. Benga, Sylvie Grandemange, George V. Shpakovski, Elena K. Shematorova, Claude Kedinger, Marc Vigneron
Nucleic Acids Res. 2005; 33(11): 3582–3590. Published online 2005 Jun 24. doi: 10.1093/nar/gki672
PMCID:
PMC1159119
AbstractArticlePDF–845K
4.
Transcriptomes of six mutants in the Sen1 pathway reveal combinatorial control of transcription termination across the Saccharomyces cerevisiae genome
Xin Chen, Kunal Poorey, Melissa N. Carver, Ulrika Müller, Stefan Bekiranov, David T. Auble, David A. Brow
PLoS Genet. 2017 Jun; 13(6): e1006863. Published online 2017 Jun 30. doi: 10.1371/journal.pgen.1006863
PMCID:
PMC5513554
AbstractArticlePDF–6.5M
5.
Structure of GPN-Loop GTPase Npa3 and Implications for RNA Polymerase II Assembly
Jürgen Niesser, Felix R. Wagner, Dirk Kostrewa, Wolfgang Mühlbacher, Patrick Cramer
Mol Cell Biol. 2016 Mar 1; 36(5): 820–831. Prepublished online 2015 Dec 28. Published online 2016 Feb 16. doi: 10.1128/MCB.01009-15
PMCID:
PMC4760217
AbstractArticlePDF–6.1M
6.
From Structure to Systems: High-Resolution, Quantitative Genetic Analysis of RNA Polymerase II
Hannes Braberg, Huiyan Jin, Erica A. Moehle, Yujia A. Chan, Shuyi Wang, Michael Shales, Joris J. Benschop, John H. Morris, Chenxi Qiu, Fuqu Hu, Leung K. Tang, James S. Fraser, Frank C.P. Holstege, Philip Hieter, Christine Guthrie, Craig D. Kaplan, Nevan J. Krogan
Cell. Author manuscript; available in PMC 2014 Aug 15.
Published in final edited form as: Cell. 2013 Aug 15; 154(4): 775–788. Published online 2013 Aug 8. doi: 10.1016/j.cell.2013.07.033
PMCID:
PMC3932829
AbstractArticlePDF–5.4M
7.
Casein Kinase II Phosphorylation of Spt6 Enforces Transcriptional Fidelity by Maintaining Spn1-Spt6 Interaction
Raghuvar Dronamraju, Jenny L. Kerschner, Sarah A. Peck, Austin J. Hepperla, Alexander T. Adams, Katlyn D. Hughes, Sadia Aslam, Andrew R. Yoblinski, Ian J. Davis, Amber L. Mosley, Brian D. Strahl
Cell Rep. Author manuscript; available in PMC 2019 Jan 25.
Published in final edited form as: Cell Rep. 2018 Dec 18; 25(12): 3476–3489.e5. doi: 10.1016/j.celrep.2018.11.089
PMCID:
PMC6347388
AbstractArticlePDF–2.7M
8.
Distinct Interaction Modes for the Eukaryotic RNA Polymerase Alpha-like Subunits
Alana E. Belkevich, Haleigh G. Pascual, Aula M. Fakhouri, David G. Ball, Bruce A. Knutson
Mol Cell Biol. 2023; 43(6): 269–282. Published online 2023 May 24. doi: 10.1080/10985549.2023.2210023
PMCID:
PMC10251799
AbstractArticlePDF–1.6M
9.
Functional organization of the Rpb5 subunit shared by the three yeast RNA polymerases
Cécile Zaros, Jean-François Briand, Yves Boulard, Sylvie Labarre-Mariotte, M. Carmen Garcia-Lopez, Pierre Thuriaux, Francisco Navarro
Nucleic Acids Res. 2007 Jan; 35(2): 634–647. Published online 2006 Dec 19. doi: 10.1093/nar/gkl686
PMCID:
PMC1802627
AbstractArticlePDF–1.4M
10.
Gpn2 and Rba50 Directly Participate in the Assembly of the Rpb3 Subcomplex in the Biogenesis of RNA Polymerase II
Fanli Zeng, Yu Hua, Xiaoqin Liu, Sijie Liu, Kejing Lao, Ze Zhang, Daochun Kong
Mol Cell Biol. 2018 Jul 1; 38(13): e00091-18. Prepublished online 2018 Apr 16. Published online 2018 Jun 14. doi: 10.1128/MCB.00091-18
PMCID:
PMC6002695
AbstractArticlePDF–1.9M
11.
Structural Basis for Eukaryotic Transcription-Coupled DNA Repair Initiation
Jun Xu, Indrajit Lahiri, Wei Wang, Adam Wier, Michael A. Cianfrocco, Jenny Chong, Alissa A. Hare, Peter B. Dervan, Frank DiMaio, Andres E. Leschziner, Dong Wang
Nature. Author manuscript; available in PMC 2018 May 22.
Published in final edited form as: Nature. 2017 Nov 30; 551(7682): 653–657. Published online 2017 Nov 22. doi: 10.1038/nature24658
PMCID:
PMC5907806
AbstractArticlePDF–2.1M
12.
Regulon-Specific Control of Transcription Elongation across the Yeast Genome
Vicent Pelechano, Silvia Jimeno-González, Alfonso Rodríguez-Gil, José García-Martínez, José E. Pérez-Ortín, Sebastián Chávez
PLoS Genet. 2009 Aug; 5(8): e1000614. Published online 2009 Aug 21. doi: 10.1371/journal.pgen.1000614
PMCID:
PMC2721418
AbstractArticlePDF–1.4M
13.
Structural basis of transcription: Backtracked RNA polymerase II at 3.4 Å resolution
Dong Wang, David A. Bushnell, Xuhui Huang, Kenneth D. Westover, Michael Levitt, Roger D. Kornberg
Science. Author manuscript; available in PMC 2009 Jul 30.
Published in final edited form as: Science. 2009 May 29; 324(5931): 1203–1206. doi: 10.1126/science.1168729
PMCID:
PMC2718261
AbstractArticlePDF–2.1M
14.
An initiation element in the yeast CUP1 promoter is recognized by RNA polymerase II in the absence of TATA box-binding protein if the DNA is negatively supercoiled
Benoit P. Leblanc, Craig J. Benham, David J. Clark
Proc Natl Acad Sci U S A. 2000 Sep 26; 97(20): 10745–10750. Published online 2000 Sep 12. doi: 10.1073/pnas.200365097
PMCID:
PMC27094
AbstractArticlePDF–791K
15.
3.1Å structure of yeast RNA polymerase II elongation complex stalled at a cyclobutane pyrimidine dimer lesion solved using streptavidin affinity grids
Indrajit Lahiri, Jun Xu, Bong Gyoon Han, Juntaek Oh, Dong Wang, Frank DiMaio, Andres E Leschziner
J Struct Biol. Author manuscript; available in PMC 2020 Sep 1.
Published in final edited form as: J Struct Biol. 2019 Sep 1; 207(3): 270–278. Published online 2019 Jun 11. doi: 10.1016/j.jsb.2019.06.004
PMCID:
PMC6711803
AbstractArticlePDF–2.7M
16.
The cryo-EM structure of a 12-subunit variant of RNA polymerase I reveals dissociation of the A49-A34.5 heterodimer and rearrangement of subunit A12.2
Lucas Tafur, Yashar Sadian, Jonas Hanske, Rene Wetzel, Felix Weis, Christoph W Müller
eLife. 2019; 8: e43204. Published online 2019 Mar 26. doi: 10.7554/eLife.43204
PMCID:
PMC6435322
AbstractArticlePDF–8.7M
17.
Sequence-specific thermodynamic properties of nucleic acids influence both transcriptional pausing and backtracking in yeast
Martin Lukačišin, Matthieu Landon, Rishi Jajoo
PLoS One. 2017; 12(3): e0174066. Published online 2017 Mar 16. doi: 10.1371/journal.pone.0174066
PMCID:
PMC5354634
AbstractArticlePDF–3.2M
18.
Nucleosomal arrangement affects single-molecule transcription dynamics
Veronika Fitz, Jaeoh Shin, Christoph Ehrlich, Lucas Farnung, Patrick Cramer, Vasily Zaburdaev, Stephan W. Grill
Proc Natl Acad Sci U S A. 2016 Nov 8; 113(45): 12733–12738. Published online 2016 Oct 24. doi: 10.1073/pnas.1602764113
PMCID:
PMC5111697
AbstractArticlePDF–1.1M
19.
Complete dissection of transcription elongation reveals slow translocation of RNA polymerase II in a linear ratchet mechanism
Manchuta Dangkulwanich, Toyotaka Ishibashi, Shixin Liu, Maria L Kireeva, Lucyna Lubkowska, Mikhail Kashlev, Carlos J Bustamante
eLife. 2013; 2: e00971. Published online 2013 Sep 24. doi: 10.7554/eLife.00971
PMCID:
PMC3778554
AbstractArticlePDF–3.5M
20.
The histone 3 lysine 36 methyltransferase, SET2, is involved in transcriptional elongation
Daniel Schaft, Assen Roguev, Kimberly M. Kotovic, Anna Shevchenko, Mihail Sarov, Andrej Shevchenko, Karla M. Neugebauer, A. Francis Stewart
Nucleic Acids Res. 2003 May 15; 31(10): 2475–2482. doi: 10.1093/nar/gkg372
PMCID:
PMC156053
AbstractArticlePDF–245K

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