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Items: 1 to 20 of 67

1.
Local statistics allow quantification of cell-to-cell variability from high-throughput microscope images
Louis-François Handfield, Bob Strome, Yolanda T. Chong, Alan M. Moses
Bioinformatics. 2015 Mar 15; 31(6): 940–947. Published online 2014 Dec 9. doi: 10.1093/bioinformatics/btu759
PMCID:
PMC4380034
AbstractArticlePDF–620K
2.
Identification of negative regulatory genes that govern the expression of early meiotic genes in yeast.
R Strich, M R Slater, R E Esposito
Proc Natl Acad Sci U S A. 1989 Dec; 86(24): 10018–10022. doi: 10.1073/pnas.86.24.10018
PMCID:
PMC522385
SummaryPage BrowsePDF–1.4M
3.
Characterization of the Wtm proteins, a novel family of Saccharomyces cerevisiae transcriptional modulators with roles in meiotic regulation and silencing.
L F Pemberton, G Blobel
Mol Cell Biol. 1997 Aug; 17(8): 4830–4841. doi: 10.1128/mcb.17.8.4830
PMCID:
PMC232335
SummaryPDF–1.8M
4.
Structures and dynamics of Rpd3S complex bound to nucleosome
Chengcheng Wang, Chen Chu, Zhouyan Guo, Xiechao Zhan
Sci Adv. 2024 Apr 12; 10(15): eadk7678. Published online 2024 Apr 10. doi: 10.1126/sciadv.adk7678
PMCID:
PMC11006229
AbstractArticlePDF–9.4M
5.
Structural basis of nucleosome deacetylation and DNA linker tightening by Rpd3S histone deacetylase complex
Shuqi Dong, Huadong Li, Meilin Wang, Nadia Rasheed, Binqian Zou, Xijie Gao, Jiali Guan, Weijie Li, Jiale Zhang, Chi Wang, Ningkun Zhou, Xue Shi, Mei Li, Min Zhou, Junfeng Huang, He Li, Ying Zhang, Koon Ho Wong, Xiaofei Zhang, William Chong Hang Chao, Jun He
Cell Res. 2023 Oct; 33(10): 790–801. Published online 2023 Sep 4. doi: 10.1038/s41422-023-00869-1
PMCID:
PMC10542350
AbstractArticlePDF–9.2M
6.
Homodimeric PHD Domain-containing Rco1 Subunit Constitutes a Critical Interaction Hub within the Rpd3S Histone Deacetylase Complex
Chun Ruan, Haochen Cui, Chul-Hwan Lee, Sheng Li, Bing Li
J Biol Chem. 2016 Mar 4; 291(10): 5428–5438. Published online 2016 Jan 8. doi: 10.1074/jbc.M115.703637
PMCID:
PMC4777872
AbstractArticlePDF–2.2M
7.
Direct Role for the Rpd3 Complex in Transcriptional Induction of the Anaerobic DAN/TIR Genes in Yeast
Odeniel Sertil, Arvind Vemula, Sharon L. Salmon, Randall H. Morse, Charles V. Lowry
Mol Cell Biol. 2007 Mar; 27(6): 2037–2047. Published online 2007 Jan 8. doi: 10.1128/MCB.02297-06
PMCID:
PMC1820486
AbstractArticlePDF–504K
8.
Xbp1-mediated histone H4 deacetylation contributes to DNA double-strand break repair in yeast
Ran Tao, Hua Chen, Chan Gao, Peng Xue, Fuquan Yang, Jing-Dong J Han, Bing Zhou, Ye-Guang Chen
Cell Res. 2011 Nov; 21(11): 1619–1633. Published online 2011 Apr 5. doi: 10.1038/cr.2011.58
PMCID:
PMC3364731
AbstractArticlePDF–1.2M
9.
Determining Protein Complex Connectivity Using a Probabilistic Deletion Network Derived from Quantitative Proteomics
Mihaela E. Sardiu, Joshua M. Gilmore, Michael J. Carrozza, Bing Li, Jerry L. Workman, Laurence Florens, Michael P. Washburn
PLoS One. 2009; 4(10): e7310. Published online 2009 Oct 6. doi: 10.1371/journal.pone.0007310
PMCID:
PMC2751824
AbstractArticlePDF–463K
10.
Cryo-EM structure of the Saccharomyces cerevisiae Rpd3L histone deacetylase complex
Avinash B. Patel, Jinkang Qing, Kelly H. Tam, Sara Zaman, Maria Luiso, Ishwar Radhakrishnan, Yuan He
Nat Commun. 2023; 14: 3061. Published online 2023 May 27. doi: 10.1038/s41467-023-38687-z
PMCID:
PMC10224958
AbstractArticlePDF–4.2M
11.
Novel insights into iron metabolism by integrating deletome and transcriptome analysis in an iron deficiency model of the yeast Saccharomyces cerevisiae
William J Jo, Jeung Hyoun Kim, Eric Oh, Daniel Jaramillo, Patricia Holman, Alex V Loguinov, Adam P Arkin, Corey Nislow, Guri Giaever, Chris D Vulpe
BMC Genomics. 2009; 10: 130. Published online 2009 Mar 25. doi: 10.1186/1471-2164-10-130
PMCID:
PMC2669097
AbstractArticlePDF–1.6M
12.
Analyzing Chromatin Remodeling Complexes Using Shotgun Proteomics and Normalized Spectral Abundance Factors
Laurence Florens, Michael J. Carozza, Selene K Swanson, Marjorie Fournier, Michael K. Coleman, Jerry L. Workman, Michael P. Washburn
Methods. Author manuscript; available in PMC 2007 Dec 1.
Published in final edited form as: Methods. 2006 Dec; 40(4): 303–311. doi: 10.1016/j.ymeth.2006.07.028
PMCID:
PMC1815300
AbstractArticlePDF–900K
13.
Genomic Analysis of the Opi− Phenotype
Leandria C. Hancock, Ryan P. Behta, John M. Lopes
Genetics. 2006 Jun; 173(2): 621–634. doi: 10.1534/genetics.106.057489
PMCID:
PMC1526532
AbstractArticlePDF–924K
14.
Genetic Identification of Factors That Modulate Ribosomal DNA Transcription in Saccharomyces cerevisiae
Robert D. Hontz, Rachel O. Niederer, Joseph M. Johnson, Jeffrey S. Smith
Genetics. 2009 May; 182(1): 105–119. doi: 10.1534/genetics.108.100313
PMCID:
PMC2674809
AbstractArticlePDF–1.9M
15.
Histone deacetylase Rpd3 antagonizes Sir2-dependent silent chromatin propagation
Jing Zhou, Bo O. Zhou, Brian A. Lenzmeier, Jin-Qiu Zhou
Nucleic Acids Res. 2009 Jun; 37(11): 3699–3713. Published online 2009 Apr 16. doi: 10.1093/nar/gkp233
PMCID:
PMC2699518
AbstractArticlePDF–2.2M
16.
The TORC1 activates Rpd3L complex to deacetylate Ino80 and H2A.Z and repress autophagy
Xin Li, Qianyun Mei, Qi Yu, Min Wang, Fei He, Duncheng Xiao, Huan Liu, Feng Ge, Xilan Yu, Shanshan Li
Sci Adv. 2023 Mar; 9(10): eade8312. Published online 2023 Mar 8. doi: 10.1126/sciadv.ade8312
PMCID:
PMC9995077
AbstractArticlePDF–2.7M
17.
The Rpd3 Core Complex is a Chromatin Stabilization Module
Xiao-Fen Chen, Benjamin Kuryan, Tasuku Kitada, Nancy Tran, Jing-Yu Li, Siavash Kurdistani, Michael Grunstein, Bing Li, Michael Carey
Curr Biol. Author manuscript; available in PMC 2013 Aug 30.
Published in final edited form as: Curr Biol. 2012 Jan 10; 22(1): 56–63. Published online 2011 Dec 15. doi: 10.1016/j.cub.2011.11.042
PMCID:
PMC3758238
AbstractArticlePDF–2.1M
18.
The Yeast Snt2 Protein Coordinates the Transcriptional Response to Hydrogen Peroxide-Mediated Oxidative Stress
Lindsey A. Baker, Beatrix M. Ueberheide, Scott Dewell, Brian T. Chait, Deyou Zheng, C. David Allis
Mol Cell Biol. 2013 Oct; 33(19): 3735–3748. doi: 10.1128/MCB.00025-13
PMCID:
PMC3811877
AbstractArticlePDF–2.1M
19.
Chromatin remodelers Isw1 and Chd1 maintain chromatin structure during transcription by preventing histone exchange
Michaela Smolle, Swaminathan Venkatesh, Madelaine M. Gogol, Hua Li, Ying Zhang, Laurence Florens, Michael P. Washburn, Jerry L. Workman
Nat Struct Mol Biol. Author manuscript; available in PMC 2013 Mar 1.
Published in final edited form as: Nat Struct Mol Biol. 2012 Sep; 19(9): 884–892. Published online 2012 Aug 26. doi: 10.1038/nsmb.2312
PMCID:
PMC3560298
AbstractArticlePDF–2.9M
20.
A Proteomics Analysis of Yeast Mot1p Protein-Protein Associations : Insights into Mechanism
Diana R. Arnett, Jennifer L. Jennings, David L. Tabb, Andrew J. Link, P. Anthony Weil
Mol Cell Proteomics. 2008 Nov; 7(11): 2090–2106. doi: 10.1074/mcp.M800221-MCP200
PMCID:
PMC2577210
AbstractArticlePDF–929K

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