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Select item 3437951.

Eaf3 Regulates the Global Pattern of Histone Acetylation in Saccharomyces cerevisiae

Juliet L. Reid, Zarmik Moqtaderi, Kevin Struhl

Mol Cell Biol. 2004 Jan; 24(2): 757–764. doi: 10.1128/MCB.24.2.757-764.2004

PMCID:: PMC343795

Abstract Article PDF–361K

Select item 69049312.

H3K36 Methylation and the Chromodomain Protein Eaf3 Are Required for Proper Cotranscriptional Spliceosome Assembly

Calvin S. Leung, Stephen M. Douglass, Marco Morselli, Matthew B. Obusan, Marat S. Pavlyukov, Matteo Pellegrini, Tracy L. Johnson

Cell Rep. Author manuscript; available in PMC 2019 Dec 11.

Published in final edited form as: Cell Rep. 2019 Jun 25; 27(13): 3760–3769.e4. doi: 10.1016/j.celrep.2019.05.100

PMCID:: PMC6904931

Abstract Article PDF–864K

Select item 25825893.

Structural Basis for the Recognition of Methylated Histone H3K36 by the Eaf3 Subunit of Histone Deacetylase Complex Rpd3S

Chao Xu, Gaofeng Cui, Maria Victoria Botuyan, Georges Mer

Structure. Author manuscript; available in PMC 2009 Nov 1.

Published in final edited form as: Structure. 2008 Nov; 16(11): 1740–1750. Published online 2008 Sep 25. doi: 10.1016/j.str.2008.08.008

PMCID:: PMC2582589

Abstract Article PDF–2.3M

Select item 96708704.

Biochemical Characterization of the TINTIN Module of the NuA4 Complex Reveals Allosteric Regulation of Nucleosome Interaction

Udit Dalwadi, Elaina Corrado, Kaelin D. Fleming, Brandon E. Moeller, Sung-Eun Nam, John E. Burke, Calvin K. Yip

Mol Cell Biol. 2022 Nov; 42(11): e00170-22. Published online 2022 Oct 3. doi: 10.1128/mcb.00170-22

PMCID:: PMC9670870

Abstract Article PDF–2.1M

Select item 70333115.

The Eaf3 chromodomain acts as a pH sensor for gene expression by altering its binding affinity for histone methylated-lysine residues

Masahiko Okuda, Yoshifumi Nishimura

Biosci Rep. 2020 Feb 28; 40(2): BSR20191958. Published online 2020 Feb 20. doi: 10.1042/BSR20191958

PMCID:: PMC7033311

Abstract Article PDF–2.1M

Select item 38801496.

Nascent transcript sequencing visualizes transcription at nucleotide resolution

L. Stirling Churchman, Jonathan S. Weissman

Nature. Author manuscript; available in PMC 2014 Jan 3.

Published in final edited form as: Nature. 2011 Jan 20; 469(7330): 10.1038/nature09652. doi: 10.1038/nature09652

PMCID:: PMC3880149

Abstract Article PDF–2.1M

Select item 26623077.

Molecular Basis of the Interaction of Saccharomyces cerevisiae Eaf3 Chromo Domain with Methylated H3K36

Bingfa Sun, Jing Hong, Peng Zhang, Xianchi Dong, Xu Shen, Donghai Lin, Jianping Ding

J Biol Chem. 2008 Dec 26; 283(52): 36504–36512. doi: 10.1074/jbc.M806564200

PMCID:: PMC2662307

Abstract Article PDF–558K

Select item 89364468.

Set2 histone methyltransferase regulates transcription coupled-nucleotide excision repair in yeast

Kathiresan Selvam, Dalton A. Plummer, Peng Mao, John J. Wyrick

PLoS Genet. 2022 Mar; 18(3): e1010085. Published online 2022 Mar 9. doi: 10.1371/journal.pgen.1010085

PMCID:: PMC8936446

Abstract Article PDF–3.6M

Select item 17471909.

Structure of human MRG15 chromo domain and its binding to Lys36-methylated histone H3

Peng Zhang, Jiamu Du, Bingfa Sun, Xianchi Dong, Guoliang Xu, Jinqiu Zhou, Qingqiu Huang, Qun Liu, Quan Hao, Jianping Ding

Nucleic Acids Res. 2006 Dec; 34(22): 6621–6628. Published online 2006 Nov 28. doi: 10.1093/nar/gkl989

PMCID:: PMC1747190

Abstract Article PDF–2.7M

Select item 1100622910.

Structures and dynamics of Rpd3S complex bound to nucleosome

Chengcheng Wang, Chen Chu, Zhouyan Guo, Xiechao Zhan

Sci Adv. 2024 Apr 12; 10(15): eadk7678. Published online 2024 Apr 10. doi: 10.1126/sciadv.adk7678

PMCID:: PMC11006229

Abstract Article PDF–9.4M

Select item 1054235011.

Structural basis of nucleosome deacetylation and DNA linker tightening by Rpd3S histone deacetylase complex

Shuqi Dong, Huadong Li, Meilin Wang, Nadia Rasheed, Binqian Zou, Xijie Gao, Jiali Guan, Weijie Li, Jiale Zhang, Chi Wang, Ningkun Zhou, Xue Shi, Mei Li, Min Zhou, Junfeng Huang, He Li, Ying Zhang, Koon Ho Wong, Xiaofei Zhang, William Chong Hang Chao, Jun He

Cell Res. 2023 Oct; 33(10): 790–801. Published online 2023 Sep 4. doi: 10.1038/s41422-023-00869-1

PMCID:: PMC10542350

Abstract Article PDF–9.2M

Select item 688649712.

Chromatin-sensitive cryptic promoters putatively drive expression of alternative protein isoforms in yeast

Wu Wei, Bianca P. Hennig, Jingwen Wang, Yujie Zhang, Ilaria Piazza, Yerma Pareja Sanchez, Christophe D. Chabbert, Sophie H. Adjalley, Lars M. Steinmetz, Vicent Pelechano

Genome Res. 2019 Dec; 29(12): 1974–1984. doi: 10.1101/gr.243378.118

PMCID:: PMC6886497

Abstract Article PDF–3.7M

Select item 491402513.

Using both strands: The fundamental nature of antisense transcription

Struan C Murray, Jane Mellor

Bioarchitecture. 2016 Jan-Feb; 6(1): 12–21. Published online 2016 Jan 13. doi: 10.1080/19490992.2015.1130779

PMCID:: PMC4914025

Abstract Article PDF–706K

Select item 477787214.

Homodimeric PHD Domain-containing Rco1 Subunit Constitutes a Critical Interaction Hub within the Rpd3S Histone Deacetylase Complex

Chun Ruan, Haochen Cui, Chul-Hwan Lee, Sheng Li, Bing Li

J Biol Chem. 2016 Mar 4; 291(10): 5428–5438. Published online 2016 Jan 8. doi: 10.1074/jbc.M115.703637

PMCID:: PMC4777872

Abstract Article PDF–2.2M

Select item 470110415.

Combined Interactions of Plant Homeodomain and Chromodomain Regulate NuA4 Activity at DNA Double-Strand Breaks

Wen-Pin Su, Sen-Huei Hsu, Li-Chiao Chia, Jui-Yang Lin, Song-Bin Chang, Zong-da Jiang, Yi-Ju Lin, Min-Yu Shih, Yi-Cheng Chen, Mau-Sun Chang, Wen-Bin Yang, Jan-Jong Hung, Po-Cheng Hung, Wei-Sheng Wu, Kyungjae Myung, Hungjiun Liaw

Genetics. 2016 Jan; 202(1): 77–92. Published online 2015 Nov 10. doi: 10.1534/genetics.115.184432

PMCID:: PMC4701104

Abstract Article PDF–4.7M

Select item 433215216.

A high-throughput ChIP-Seq for large-scale chromatin studies

Christophe D Chabbert, Sophie H Adjalley, Bernd Klaus, Emilie S Fritsch, Ishaan Gupta, Vicent Pelechano, Lars M Steinmetz

Mol Syst Biol. 2015 Jan; 11(1): 777. Published online 2015 Jan 12. doi: 10.15252/msb.20145776

PMCID:: PMC4332152

Abstract Article PDF–1.4M

Select item 268295417.

Genome-wide replication profiles indicate an expansive role for Rpd3L in regulating replication initiation timing or efficiency, and reveal genomic loci of Rpd3 function in Saccharomyces cerevisiae

Simon R.V. Knott, Christopher J. Viggiani, Simon Tavaré, Oscar M. Aparicio

Genes Dev. 2009 May 1; 23(9): 1077–1090. doi: 10.1101/gad.1784309

PMCID:: PMC2682954

Abstract Article PDF–1.3M

Select item 227810818.

Catalytic-Site Mutations in the MYST Family Histone Acetyltransferase Esa1

Peter V. Decker, David Y. Yu, Masayoshi Iizuka, Qifeng Qiu, M. Mitchell Smith

Genetics. 2008 Mar; 178(3): 1209–1220. doi: 10.1534/genetics.107.080135

PMCID:: PMC2278108

Abstract Article PDF–1.5M

Select item 144694319.

The Bur1 Cyclin-Dependent Protein Kinase Is Required for the Normal Pattern of Histone Methylation by Set2

Yaya Chu, Ann Sutton, Rolf Sternglanz, Gregory Prelich

Mol Cell Biol. 2006 Apr; 26(8): 3029–3038. doi: 10.1128/MCB.26.8.3029-3038.2006

PMCID:: PMC1446943

Abstract Article PDF–324K

Select item 19607320.

Yeast Enhancer of Polycomb defines global Esa1-dependent acetylation of chromatin

Alexandre A. Boudreault, Dominique Cronier, William Selleck, Nicolas Lacoste, Rhea T. Utley, Stéphane Allard, Julie Savard, William S. Lane, Song Tan, Jacques Côté

Genes Dev. 2003 Jun 1; 17(11): 1415–1428. doi: 10.1101/gad.1056603