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Select item 69860051.

The complete chloroplast genome of greater duckweed (Spirodela polyrhiza 7498) using PacBio long reads: insights into the chloroplast evolution and transcription regulation

Yating Zhang, Dong An, Changsheng Li, Zhixuan Zhao, Wenqin Wang

BMC Genomics. 2020; 21: 76. Published online 2020 Jan 28. doi: 10.1186/s12864-020-6499-y

PMCID:: PMC6986005

Abstract Article PDF–1.9M

Select item 68433402.

Suppression of Melatonin 2-Hydroxylase Increases Melatonin Production Leading to the Enhanced Abiotic Stress Tolerance against Cadmium, Senescence, Salt, and Tunicamycin in Rice Plants

Geun-Hee Choi, Kyoungwhan Back

Biomolecules. 2019 Oct; 9(10): 589. Published online 2019 Oct 8. doi: 10.3390/biom9100589

PMCID:: PMC6843340

Abstract Article PDF–4.3M

Select item 66928093.

Signatures of differential selection in chloroplast genome between japonica and indica

Lin Cheng, Jungrye Nam, Sang-Ho Chu, Phitaktansakul Rungnapa, Myeong-hyeon Min, Yuan Cao, Ji-min Yoo, Jee-Su Kang, Kyu-Won Kim, Yong-Jin Park

Rice (N Y) 2019; 12: 65. Published online 2019 Aug 14. doi: 10.1186/s12284-019-0322-x

PMCID:: PMC6692809

Abstract Article PDF–2.2M

Select item 66624674.

Analyzing and Characterizing the Chloroplast Genome of Salix wilsonii

Yingnan Chen, Nan Hu, Huaitong Wu

Biomed Res Int. 2019; 2019: 5190425. Published online 2019 Jul 15. doi: 10.1155/2019/5190425

PMCID:: PMC6662467

Abstract Article PDF–1.4M

Select item 66596355.

Evolution of Oryza chloroplast genomes promoted adaptation to diverse ecological habitats

Li-Zhi Gao, Yun-Long Liu, Dan Zhang, Wei Li, Ju Gao, Yuan Liu, Kui Li, Chao Shi, Yuan Zhao, You-Jie Zhao, Jun-Ying Jiao, Shu-Yan Mao, Cheng-Wen Gao, Evan E. Eichler

Commun Biol. 2019; 2: 278. Published online 2019 Jul 26. doi: 10.1038/s42003-019-0531-2

PMCID:: PMC6659635

Abstract Article PDF–1.6M

Select item 64868086.

Tracing the Evolution of the Plastome and Mitogenome in the Chloropicophyceae Uncovered Convergent tRNA Gene Losses and a Variant Plastid Genetic Code

Monique Turmel, Adriana Lopes dos Santos, Christian Otis, Roxanne Sergerie, Claude Lemieux

Genome Biol Evol. 2019 Apr; 11(4): 1275–1292. Published online 2019 Apr 1. doi: 10.1093/gbe/evz074

PMCID:: PMC6486808

Abstract Article PDF–2.9M

Select item 64743257.

PPR Protein BFA2 Is Essential for the Accumulation of the atpH/F Transcript in Chloroplasts

Lin Zhang, Wen Zhou, Liping Che, Jean-David Rochaix, Congming Lu, Wenjing Li, Lianwei Peng

Front Plant Sci. 2019; 10: 446. Published online 2019 Apr 12. doi: 10.3389/fpls.2019.00446

PMCID:: PMC6474325

Abstract Article PDF–6.4M

Select item 64276898.

Origin of the Aromatic Group of Cultivated Rice (Oryza sativa L.) Traced to the Indian Subcontinent

Peter Civáň, Sajid Ali, Riza Batista-Navarro, Konstantina Drosou, Chioma Ihejieto, Debarati Chakraborty, Avik Ray, Pierre Gladieux, Terence A Brown

Genome Biol Evol. 2019 Mar; 11(3): 832–843. Published online 2019 Feb 21. doi: 10.1093/gbe/evz039

PMCID:: PMC6427689

Abstract Article PDF–1.8M

Select item 64169249.

GRIBCG: a software for selection of sgRNAs in the design of balancer chromosomes

Brian B. Merritt, Lily S. Cheung

BMC Bioinformatics. 2019; 20: 122. Published online 2019 Mar 12. doi: 10.1186/s12859-019-2712-x

PMCID:: PMC6416924

Abstract Article PDF–1.4M

Select item 634176810.

Genomic and evolutionary aspects of chloroplast tRNA in monocot plants

Tapan Kumar Mohanta, Abdul Latif Khan, Abeer Hashem, Elsayed Fathi Abd_ Allah, Dhananjay Yadav, Ahmed Al-Harrasi

BMC Plant Biol. 2019; 19: 39. Published online 2019 Jan 22. doi: 10.1186/s12870-018-1625-6

PMCID:: PMC6341768

Abstract Article PDF–2.5M

Select item 625869611.

Comparative assessment shows the reliability of chloroplast genome assembly using RNA-seq

Carolina Osuna-Mascaró, Rafael Rubio de Casas, Francisco Perfectti

Sci Rep. 2018; 8: 17404. Published online 2018 Nov 27. doi: 10.1038/s41598-018-35654-3

PMCID:: PMC6258696

Abstract Article PDF–3.1M

Select item 622646612.

Complete chloroplast genome sequence of Dryopteris fragrans (L.) Schott and the repeat structures against the thermal environment

Rui Gao, Wenzhong Wang, Qingyang Huang, Ruifeng Fan, Xu Wang, Peng Feng, Guangming Zhao, Shuang Bian, Hongli Ren, Ying Chang

Sci Rep. 2018; 8: 16635. Published online 2018 Nov 9. doi: 10.1038/s41598-018-35061-8

PMCID:: PMC6226466

Abstract Article PDF–3.2M

Select item 621561213.

Mosaic mitochondrial-plastid insertions into the nuclear genome show evidence of both non-homologous end joining and homologous recombination

Shir Portugez, William F. Martin, Einat Hazkani-Covo

BMC Evol Biol. 2018; 18: 162. Published online 2018 Nov 3. doi: 10.1186/s12862-018-1279-x

PMCID:: PMC6215612

Abstract Article PDF–900K

Select item 609104414.

Investigation of mitochondrial-derived plastome sequences in the Paspalum lineage (Panicoideae; Poaceae)

Sean V. Burke, Mark C. Ungerer, Melvin R. Duvall

BMC Plant Biol. 2018; 18: 152. Published online 2018 Aug 3. doi: 10.1186/s12870-018-1379-1

PMCID:: PMC6091044

Abstract Article PDF–1.2M

Select item 591631415.

Diversity and evolution of rice progenitors in Australia

Ali M. Moner, Agnelo Furtado, Ian Chivers, Glen Fox, Darren Crayn, Robert J. Henry

Ecol Evol. 2018 Apr; 8(8): 4360–4366. Published online 2018 Apr 2. doi: 10.1002/ece3.3989

PMCID:: PMC5916314

Abstract Article PDF–637K

Select item 587462816.

Bacterial Microbiota of Rice Roots: 16S-Based Taxonomic Profiling of Endophytic and Rhizospheric Diversity, Endophytes Isolation and Simplified Endophytic Community

Felix Moronta-Barrios, Fabrizia Gionechetti, Alberto Pallavicini, Edgloris Marys, Vittorio Venturi

Microorganisms. 2018 Mar; 6(1): 14. Published online 2018 Feb 11. doi: 10.3390/microorganisms6010014

PMCID:: PMC5874628

Abstract Article PDF–2.3M

Select item 583579717.

Optimized Method of Extracting Rice Chloroplast DNA for High-Quality Plastome Resequencing and de Novo Assembly

Takeshi Takamatsu, Marouane Baslam, Takuya Inomata, Kazusato Oikawa, Kimiko Itoh, Takayuki Ohnishi, Tetsu Kinoshita, Toshiaki Mitsui

Front Plant Sci. 2018; 9: 266. Published online 2018 Feb 28. doi: 10.3389/fpls.2018.00266

PMCID:: PMC5835797

Abstract Article PDF–5.7M

Select item 566102418.

Development of Chloroplast Genomic Resources for Oryza Species Discrimination

Yun Song, Yan Chen, Jizhou Lv, Jin Xu, Shuifang Zhu, MingFu Li, Naizhong Chen

Front Plant Sci. 2017; 8: 1854. Published online 2017 Oct 25. doi: 10.3389/fpls.2017.01854

PMCID:: PMC5661024

Abstract Article PDF–4.5M

Select item 562687919.

Unveiling Chloroplast RNA Editing Events Using Next Generation Small RNA Sequencing Data

Nureyev F. Rodrigues, Ana P. Christoff, Guilherme C. da Fonseca, Franceli R. Kulcheski, Rogerio Margis

Front Plant Sci. 2017; 8: 1686. Published online 2017 Sep 29. doi: 10.3389/fpls.2017.01686

PMCID:: PMC5626879

Abstract Article PDF–1.2M

Select item 533882720.

Sequencing the extrachromosomal circular mobilome reveals retrotransposon activity in plants

Sophie Lanciano, Marie-Christine Carpentier, Christel Llauro, Edouard Jobet, Dagmara Robakowska-Hyzorek, Eric Lasserre, Alain Ghesquière, Olivier Panaud, Marie Mirouze

PLoS Genet. 2017 Feb; 13(2): e1006630. Published online 2017 Feb 17. doi: 10.1371/journal.pgen.1006630

PMCID:: PMC5338827

Abstract Article PDF–1.7M

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