Full text in PMC (nucleotide) for Gene (Select 58109) - PMC

Select item 69243231.

Expression of extraocular opsin genes and light-dependent basal activity of blind cavefish

Noah Simon, Suguru Fujita, Megan Porter, Masato Yoshizawa

PeerJ. 2019; 7: e8148. Published online 2019 Dec 17. doi: 10.7717/peerj.8148

PMCID:: PMC6924323

Select item 67721922.

Vertebrate Ancient-Long Opsin: A Green-Sensitive Photoreceptive Molecule Present in Zebrafish Deep Brain and Retinal Horizontal Cells

Daisuke Kojima, Hiroaki Mano, Yoshitaka Fukada

J Neurosci. 2000 Apr 15; 20(8): 2845–2851. doi: 10.1523/JNEUROSCI.20-08-02845.2000

PMCID:: PMC6772192

Abstract Article PDF–469K

Select item 64612503.

Plasticity of opsin gene expression in the adult red shiner (Cyprinella lutrensis) in response to turbid habitats

Chia-Hao Chang, Hong Young Yan

PLoS One. 2019; 14(4): e0215376. Published online 2019 Apr 12. doi: 10.1371/journal.pone.0215376

PMCID:: PMC6461250

Abstract Article PDF–882K

Select item 64169244.

GRIBCG: a software for selection of sgRNAs in the design of balancer chromosomes

Brian B. Merritt, Lily S. Cheung

BMC Bioinformatics. 2019; 20: 122. Published online 2019 Mar 12. doi: 10.1186/s12859-019-2712-x

PMCID:: PMC6416924

Abstract Article PDF–1.4M

Select item 63131635.

Opsin-based photopigments expressed in the retina of a South American pit viper, Bothrops atrox (Viperidae)

Christiana Katti, Micaela Stacey-Solis, Nicole A. Coronel-Rojas, Wayne I.L. Davies

Vis Neurosci. 2018; 35: E027. Published online 2018 Dec 27. doi: 10.1017/S0952523818000056

PMCID:: PMC6313163

Abstract Article PDF–1004K

Select item 62141186.

Hnf4α Is Involved in LC-PUFA Biosynthesis by Up-Regulating Gene Transcription of Elongase in Marine Teleost Siganus canaliculatus

Yuanyou Li, Xiaowei Zeng, Yewei Dong, Cuiying Chen, Cuihong You, Guoxia Tang, Junliang Chen, Shuqi Wang

Int J Mol Sci. 2018 Oct; 19(10): 3193. Published online 2018 Oct 16. doi: 10.3390/ijms19103193

PMCID:: PMC6214118

Abstract Article PDF–3.4M

Select item 57733137.

Green‐shifting of SWS2A opsin sensitivity and loss of function of RH2‐A opsin in flounders, genus Verasper

Satoshi Kasagi, Kanta Mizusawa, Akiyoshi Takahashi

Ecol Evol. 2018 Jan; 8(2): 1399–1410. Published online 2017 Dec 27. doi: 10.1002/ece3.3745

PMCID:: PMC5773313

Abstract Article PDF–731K

Select item 52674758.

Search strategy is regulated by somatostatin signaling and deep brain photoreceptors in zebrafish

Eric J. Horstick, Yared Bayleyen, Jennifer L. Sinclair, Harold A. Burgess

BMC Biol. 2017; 15: 4. Published online 2017 Jan 26. doi: 10.1186/s12915-016-0346-2

PMCID:: PMC5267475

Abstract Article PDF–2.6M

Select item 50850369.

Deep Brain Photoreceptor (val-opsin) Gene Knockout Using CRISPR/Cas Affects Chorion Formation and Embryonic Hatching in the Zebrafish

Chong Yee Hang, Shogo Moriya, Satoshi Ogawa, Ishwar S. Parhar

PLoS One. 2016; 11(10): e0165535. Published online 2016 Oct 28. doi: 10.1371/journal.pone.0165535

PMCID:: PMC5085036

Abstract Article PDF–4.9M

Select item 481722910.

The spotted gar genome illuminates vertebrate evolution and facilitates human-to-teleost comparisons

Ingo Braasch, Andrew R. Gehrke, Jeramiah J. Smith, Kazuhiko Kawasaki, Tereza Manousaki, Jeremy Pasquier, Angel Amores, Thomas Desvignes, Peter Batzel, Julian Catchen, Aaron M. Berlin, Michael S. Campbell, Daniel Barrell, Kyle J. Martin, John F. Mulley, Vydianathan Ravi, Alison P. Lee, Tetsuya Nakamura, Domitille Chalopin, Shaohua Fan, Dustin Wcisel, Cristian Cañestro, Jason Sydes, Felix E. G. Beaudry, Yi Sun, Jana Hertel, Michael J. Beam, Mario Fasold, Mikio Ishiyama, Jeremy Johnson, Steffi Kehr, Marcia Lara, John H. Letaw, Gary W. Litman, Ronda T. Litman, Masato Mikami, Tatsuya Ota, Nil Ratan Saha, Louise Williams, Peter F. Stadler, Han Wang, John S. Taylor, Quenton Fontenot, Allyse Ferrara, Stephen M. J. Searle, Bronwen Aken, Mark Yandell, Igor Schneider, Jeffrey A. Yoder, Jean-Nicolas Volff, Axel Meyer, Chris T. Amemiya, Byrappa Venkatesh, Peter W. H. Holland, Yann Guiguen, Julien Bobe, Neil H. Shubin, Federica Di Palma, Jessica Alföldi, Kerstin Lindblad-Toh, John H. Postlethwait

Nat Genet. Author manuscript; available in PMC 2016 Sep 22.

Published in final edited form as: Nat Genet. 2016 Apr; 48(4): 427–437. Published online 2016 Mar 7. doi: 10.1038/ng.3526

PMCID:: PMC4817229

Abstract Article PDF–2.6M

Select item 461796311.

An extended family of novel vertebrate photopigments is widely expressed and displays a diversity of function

Wayne I.L. Davies, T. Katherine Tamai, Lei Zheng, Josephine K. Fu, Jason Rihel, Russell G. Foster, David Whitmore, Mark W. Hankins

Genome Res. 2015 Nov; 25(11): 1666–1679. doi: 10.1101/gr.189886.115

PMCID:: PMC4617963

Abstract Article PDF–2.5M

Select item 457068512.

Diversification of non-visual photopigment parapinopsin in spectral sensitivity for diverse pineal functions

Mitsumasa Koyanagi, Seiji Wada, Emi Kawano-Yamashita, Yuichiro Hara, Shigehiro Kuraku, Shigeaki Kosaka, Koichi Kawakami, Satoshi Tamotsu, Hisao Tsukamoto, Yoshinori Shichida, Akihisa Terakita

BMC Biol. 2015; 13: 73. Published online 2015 Sep 15. doi: 10.1186/s12915-015-0174-9

PMCID:: PMC4570685

Abstract Article PDF–1.5M

Select item 370392713.

The zebrafish reference genome sequence and its relationship to the human genome

Kerstin Howe, Matthew D. Clark, Carlos F. Torroja, James Torrance, Camille Berthelot, Matthieu Muffato, John E. Collins, Sean Humphray, Karen McLaren, Lucy Matthews, Stuart McLaren, Ian Sealy, Mario Caccamo, Carol Churcher, Carol Scott, Jeffrey C. Barrett, Romke Koch, Gerd-Jörg Rauch, Simon White, William Chow, Britt Kilian, Leonor T. Quintais, José A. Guerra-Assunção, Yi Zhou, Yong Gu, Jennifer Yen, Jan-Hinnerk Vogel, Tina Eyre, Seth Redmond, Ruby Banerjee, Jianxiang Chi, Beiyuan Fu, Elizabeth Langley, Sean F. Maguire, Gavin K. Laird, David Lloyd, Emma Kenyon, Sarah Donaldson, Harminder Sehra, Jeff Almeida-King, Jane Loveland, Stephen Trevanion, Matt Jones, Mike Quail, Dave Willey, Adrienne Hunt, John Burton, Sarah Sims, Kirsten McLay, Bob Plumb, Joy Davis, Chris Clee, Karen Oliver, Richard Clark, Clare Riddle, David Eliott, Glen Threadgold, Glenn Harden, Darren Ware, Beverly Mortimer, Giselle Kerry, Paul Heath, Benjamin Phillimore, Alan Tracey, Nicole Corby, Matthew Dunn, Christopher Johnson, Jonathan Wood, Susan Clark, Sarah Pelan, Guy Griffiths, Michelle Smith, Rebecca Glithero, Philip Howden, Nicholas Barker, Christopher Stevens, Joanna Harley, Karen Holt, Georgios Panagiotidis, Jamieson Lovell, Helen Beasley, Carl Henderson, Daria Gordon, Katherine Auger, Deborah Wright, Joanna Collins, Claire Raisen, Lauren Dyer, Kenric Leung, Lauren Robertson, Kirsty Ambridge, Daniel Leongamornlert, Sarah McGuire, Ruth Gilderthorp, Coline Griffiths, Deepa Manthravadi, Sarah Nichol, Gary Barker, Siobhan Whitehead, Michael Kay, Jacqueline Brown, Clare Murnane, Emma Gray, Matthew Humphries, Neil Sycamore, Darren Barker, David Saunders, Justene Wallis, Anne Babbage, Sian Hammond, Maryam Mashreghi-Mohammadi, Lucy Barr, Sancha Martin, Paul Wray, Andrew Ellington, Nicholas Matthews, Matthew Ellwood, Rebecca Woodmansey, Graham Clark, James Cooper, Anthony Tromans, Darren Grafham, Carl Skuce, Richard Pandian, Robert Andrews, Elliot Harrison, Andrew Kimberley, Jane Garnett, Nigel Fosker, Rebekah Hall, Patrick Garner, Daniel Kelly, Christine Bird, Sophie Palmer, Ines Gehring, Andrea Berger, Christopher M. Dooley, Zübeyde Ersan-Ürün, Cigdem Eser, Horst Geiger, Maria Geisler, Lena Karotki, Anette Kirn, Judith Konantz, Martina Konantz, Martina Oberländer, Silke Rudolph-Geiger, Mathias Teucke, Kazutoyo Osoegawa, Baoli Zhu, Amanda Rapp, Sara Widaa, Cordelia Langford, Fengtang Yang, Nigel P. Carter, Jennifer Harrow, Zemin Ning, Javier Herrero, Steve M. J. Searle, Anton Enright, Robert Geisler, Ronald H. A. Plasterk, Charles Lee, Monte Westerfield, Pieter J. de Jong, Leonard I. Zon, John H. Postlethwait, Christiane Nüsslein-Volhard, Tim J. P. Hubbard, Hugues Roest Crollius, Jane Rogers, Derek L. Stemple

Nature. Author manuscript; available in PMC 2014 Apr 25.

Published in final edited form as: Nature. 2013 Apr 25; 496(7446): 498–503. Published online 2013 Apr 17. doi: 10.1038/nature12111

Correction in:: volume 505 on page 248

PMCID:: PMC3703927

Abstract Article PDF–1.5M

Select item 352265814.

Evolution and Functional Characterisation of Melanopsins in a Deep-Sea Chimaera (Elephant Shark, Callorhinchus milii)

Wayne I. L. Davies, Boon-Hui Tay, Lei Zheng, Janine A. Danks, Sydney Brenner, Russell G. Foster, Shaun P. Collin, Mark W. Hankins, Byrappa Venkatesh, David M. Hunt

PLoS One. 2012; 7(12): e51276. Published online 2012 Dec 14. doi: 10.1371/journal.pone.0051276

PMCID:: PMC3522658

Abstract Article PDF–1.0M

Select item 343164315.

Urokinase-type Plasminogen Activator-like Proteases in Teleosts Lack Genuine Receptor-binding Epidermal Growth Factor-like Domains

René Bager, Thomas K. Kristensen, Jan K. Jensen, Agnieszka Szczur, Anni Christensen, Lisbeth M. Andersen, Jesper S. Johansen, Niels Larsen, Erik Baatrup, Mingdong Huang, Michael Ploug, Peter A. Andreasen

J Biol Chem. 2012 Aug 10; 287(33): 27526–27536. Published online 2012 Jun 25. doi: 10.1074/jbc.M112.369207