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Items: 14

Select item 67004921.

Genome assembly and phylogenomic data analyses using plastid data: Contrasting species tree estimation methods

D.J.P. Gonçalves, B.B. Simpson, G.H. Shimizu, R.K. Jansen, E.M. Ortiz

Data Brief. 2019 Aug; 25: 104271. Published online 2019 Jul 27. doi: 10.1016/j.dib.2019.104271

PMCID:: PMC6700492

Abstract Article PDF–215K

Select item 64965902.

Lost and Found: Return of the Inverted Repeat in the Legume Clade Defined by Its Absence

In-Su Choi, Robert Jansen, Tracey Ruhlman

Genome Biol Evol. 2019 Apr; 11(4): 1321–1333. Published online 2019 Apr 8. doi: 10.1093/gbe/evz076

PMCID:: PMC6496590

Abstract Article PDF–1.3M

Select item 64242213.

Multifarious Evolutionary Pathways of a Nuclear RNA Editing Factor: Disjunctions in Coevolution of DOT4 and Its Chloroplast Target rpoC1eU488SL

Anke Hein, Sarah Brenner, Volker Knoop

Genome Biol Evol. 2019 Mar; 11(3): 798–813. Published online 2019 Feb 11. doi: 10.1093/gbe/evz032

PMCID:: PMC6424221

Abstract Article PDF–1.7M

Select item 53883314.

The distinct plastid genome structure of Maackia fauriei (Fabaceae: Papilionoideae) and its systematic implications for genistoids and tribe Sophoreae

In-Su Choi, Byoung-Hee Choi

PLoS One. 2017; 12(4): e0173766. Published online 2017 Apr 11. doi: 10.1371/journal.pone.0173766

PMCID:: PMC5388331

Abstract Article PDF–2.7M

Select item 49182015.

Chloroplast genomes: diversity, evolution, and applications in genetic engineering

Henry Daniell, Choun-Sea Lin, Ming Yu, Wan-Jung Chang

Genome Biol. 2016; 17: 134. Published online 2016 Jun 23. doi: 10.1186/s13059-016-1004-2

PMCID:: PMC4918201

Abstract Article PDF–2.4M

Select item 47619496.

Intraspecific and heteroplasmic variations, gene losses and inversions in the chloroplast genome of Astragalus membranaceus

Wanjun Lei, Dapeng Ni, Yujun Wang, Junjie Shao, Xincun Wang, Dan Yang, Jinsheng Wang, Haimei Chen, Chang Liu

Sci Rep. 2016; 6: 21669. Published online 2016 Feb 22. doi: 10.1038/srep21669

PMCID:: PMC4761949

Abstract Article PDF–3.3M

Select item 46553307.

Mimosoid legume plastome evolution: IR expansion, tandem repeat expansions, and accelerated rate of evolution in clpP

Diana V. Dugas, David Hernandez, Erik J.M. Koenen, Erika Schwarz, Shannon Straub, Colin E. Hughes, Robert K. Jansen, Madhugiri Nageswara-Rao, Martijn Staats, Joshua T. Trujillo, Nahid H. Hajrah, Njud S. Alharbi, Abdulrahman L. Al-Malki, Jamal S. M. Sabir, C. Donovan Bailey

Sci Rep. 2015; 5: 16958. Published online 2015 Nov 23. doi: 10.1038/srep16958

PMCID:: PMC4655330

Abstract Article PDF–1.3M

Select item 44256598.

The Complete Sequence of the Acacia ligulata Chloroplast Genome Reveals a Highly Divergent clpP1 Gene

Anna V. Williams, Laura M. Boykin, Katharine A. Howell, Paul G. Nevill, Ian Small

PLoS One. 2015; 10(5): e0125768. Published online 2015 May 8. doi: 10.1371/journal.pone.0125768

Correction in:: PLoS One. 2015; 10(9): e0138367.

PMCID:: PMC4425659

Abstract Article PDF–4.8M

Select item 42031289.

Genome-wide discovery and differential regulation of conserved and novel microRNAs in chickpea via deep sequencing

Mukesh Jain, VVS Narayana Chevala, Rohini Garg

J Exp Bot. 2014 Nov; 65(20): 5945–5958. Published online 2014 Aug 23. doi: 10.1093/jxb/eru333

PMCID:: PMC4203128

Abstract Article PDF–3.8M

Select item 413183510.

Two Distinct Plastid Genome Configurations and Unprecedented Intraspecies Length Variation in the accD Coding Region in Medicago truncatula

Csanad Gurdon, Pal Maliga

DNA Res. 2014 Aug; 21(4): 417–427. Published online 2014 Mar 17. doi: 10.1093/dnares/dsu007

PMCID:: PMC4131835

Abstract Article PDF–1.4M

Select item 403081511.

The first complete chloroplast genome of the Genistoid legume Lupinus luteus: evidence for a novel major lineage-specific rearrangement and new insights regarding plastome evolution in the legume family

Guillaume E. Martin, Mathieu Rousseau-Gueutin, Solenn Cordonnier, Oscar Lima, Sophie Michon-Coudouel, Delphine Naquin, Julie Ferreira de Carvalho, Malika Aïnouche, Armel Salmon, Abdelkader Aïnouche

Ann Bot. 2014 Jun; 113(7): 1197–1210. Published online 2014 Apr 25. doi: 10.1093/aob/mcu050

PMCID:: PMC4030815

Abstract Article PDF–752K

Select item 372833812.

Complete Genes May Pass from Food to Human Blood

Sándor Spisák, Norbert Solymosi, Péter Ittzés, András Bodor, Dániel Kondor, Gábor Vattay, Barbara K. Barták, Ferenc Sipos, Orsolya Galamb, Zsolt Tulassay, Zoltán Szállási, Simon Rasmussen, Thomas Sicheritz-Ponten, Søren Brunak, Béla Molnár, István Csabai

PLoS One. 2013; 8(7): e69805. Published online 2013 Jul 30. doi: 10.1371/journal.pone.0069805

PMCID:: PMC3728338

Abstract Article PDF–730K

Select item 345987313.

Does the Mode of Plastid Inheritance Influence Plastid Genome Architecture?

Kate Crosby, David Roy Smith

PLoS One. 2012; 7(9): e46260. Published online 2012 Sep 27. doi: 10.1371/journal.pone.0046260

PMCID:: PMC3459873

Abstract Article PDF–262K

Select item 258696214.

Complete plastid genome sequence of the chickpea (Cicer arietinum) and the phylogenetic distribution of rps12 and clpP intron losses among legumes (Leguminosae)

Robert K. Jansen, Martin F. Wojciechowski, Elumalai Sanniyasi, Seung-Bum Lee, Henry Daniell

Mol Phylogenet Evol. Author manuscript; available in PMC 2009 Mar 1.

Published in final edited form as: Mol Phylogenet Evol. 2008 Sep; 48(3): 1204–1217. Published online 2008 Jun 27. doi: 10.1016/j.ympev.2008.06.013

PMCID:: PMC2586962

Abstract Article PDF–1.5M

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