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Select item 63640421.

RGAAT: A Reference-based Genome Assembly and Annotation Tool for New Genomes and Upgrade of Known Genomes

Wanfei Liu, Shuangyang Wu, Qiang Lin, Shenghan Gao, Feng Ding, Xiaowei Zhang, Hasan Awad Aljohi, Jun Yu, Songnian Hu

Genomics Proteomics Bioinformatics. 2018 Oct; 16(5): 373–381. Published online 2018 Dec 21. doi: 10.1016/j.gpb.2018.03.006

PMCID:: PMC6364042

Abstract Article PDF–653K

Select item 61068232.

Astaxanthin overproduction in yeast by strain engineering and new gene target uncovering

Jin Jin, Ying Wang, Mingdong Yao, Xiaoli Gu, Bo Li, Hong Liu, Mingzhu Ding, Wenhai Xiao, Yingjin Yuan

Biotechnol Biofuels. 2018; 11: 230. Published online 2018 Aug 23. doi: 10.1186/s13068-018-1227-4

PMCID:: PMC6106823

Abstract Article PDF–4.4M

Select item 59607173.

Saccharomyces cerevisiae Differential Functionalization of Presumed ScALT1 and ScALT2 Alanine Transaminases Has Been Driven by Diversification of Pyridoxal Phosphate Interactions

Erendira Rojas-Ortega, Beatriz Aguirre-López, Horacio Reyes-Vivas, Martín González-Andrade, Jose C. Campero-Basaldúa, Juan P. Pardo, Alicia González

Front Microbiol. 2018; 9: 944. Published online 2018 May 14. doi: 10.3389/fmicb.2018.00944

PMCID:: PMC5960717

Abstract Article PDF–3.5M

Select item 54293184.

Autolysis of Pichia pastoris induced by cold

Yaneth Bartolo-Aguilar, Luc Dendooven, Cipriano Chávez-Cabrera, Luis B. Flores-Cotera, María E. Hidalgo-Lara, Lourdes Villa-Tanaca, Rodolfo Marsch

AMB Express. 2017; 7: 95. Published online 2017 May 12. doi: 10.1186/s13568-017-0397-y

Correction in:: AMB Express. 2018; 8: 185.

PMCID:: PMC5429318

Abstract Article PDF–1.4M

Select item 53617695.

Data on optimization of expression and purification of AIMP2-DX2 protein in Escherichia coli

Roshan Jha, Hye Young Cho, Ameeq Ul Mushtaq, Kiho Lee, Dae Gyu Kim, Sunghoon Kim, Young Ho Jeon

Data Brief. 2017 Apr; 11: 533–536. Published online 2017 Mar 10. doi: 10.1016/j.dib.2017.03.011

PMCID:: PMC5361769

Abstract Article PDF–641K

Select item 50633826.

Scarless Gene Tagging with One-Step Transformation and Two-Step Selection in Saccharomyces cerevisiae and Schizosaccharomyces pombe

Dirk Landgraf, Dann Huh, Erinc Hallacli, Susan Lindquist

PLoS One. 2016; 11(10): e0163950. Published online 2016 Oct 13. doi: 10.1371/journal.pone.0163950

PMCID:: PMC5063382

Abstract Article PDF–4.1M

Select item 49790947.

Protective Effects of Arginine on Saccharomyces cerevisiae Against Ethanol Stress

Yanfei Cheng, Zhaoli Du, Hui Zhu, Xuena Guo, Xiuping He

Sci Rep. 2016; 6: 31311. Published online 2016 Aug 10. doi: 10.1038/srep31311

PMCID:: PMC4979094

Abstract Article PDF–1.3M

Select item 47273108.

Extracting DNA words based on the sequence features: non-uniform distribution and integrity

Zhi Li, Hongyan Cao, Yuehua Cui, Yanbo Zhang

Theor Biol Med Model. 2016; 13: 2. Published online 2016 Jan 25. doi: 10.1186/s12976-016-0028-3

PMCID:: PMC4727310

Abstract Article PDF–785K

Select item 47096099.

Long Read Alignment with Parallel MapReduce Cloud Platform

Ahmed Abdulhakim Al-Absi, Dae-Ki Kang

Biomed Res Int. 2015; 2015: 807407. Published online 2015 Dec 29. doi: 10.1155/2015/807407

PMCID:: PMC4709609

Abstract Article PDF–2.4M

Select item 452736210.

An investigation into inter- and intragenomic variations of graphic genomic signatures

Rallis Karamichalis, Lila Kari, Stavros Konstantinidis, Steffen Kopecki

BMC Bioinformatics. 2015; 16: 246. Published online 2015 Aug 7. doi: 10.1186/s12859-015-0655-4

PMCID:: PMC4527362

Abstract Article PDF–2.5M

Select item 445967711.

Light-weight reference-based compression of FASTQ data

Yongpeng Zhang, Linsen Li, Yanli Yang, Xiao Yang, Shan He, Zexuan Zhu

BMC Bioinformatics. 2015; 16(1): 188. Published online 2015 Jun 9. doi: 10.1186/s12859-015-0628-7

PMCID:: PMC4459677

Abstract Article PDF–963K

Select item 422414912.

Nucleosome-Positioning Sequence Repeats Impact Chromatin Silencing in Yeast Minichromosomes

Sangita A. Chakraborty, Abid A. Kazi, Tamreen M. Khan, Sergei A. Grigoryev

Genetics. 2014 Nov; 198(3): 1015–1029. Published online 2014 Sep 3. doi: 10.1534/genetics.114.169508

PMCID:: PMC4224149

Abstract Article PDF–2.9M

Select item 420041113.

Production of salidroside in metabolically engineered Escherichia coli

Yanfen Bai, Huiping Bi, Yibin Zhuang, Chang Liu, Tao Cai, Xiaonan Liu, Xueli Zhang, Tao Liu, Yanhe Ma

Sci Rep. 2014; 4: 6640. Published online 2014 Oct 17. doi: 10.1038/srep06640

PMCID:: PMC4200411

Abstract Article PDF–685K

Select item 396247914.

The Reference Genome Sequence of Saccharomyces cerevisiae: Then and Now

Stacia R. Engel, Fred S. Dietrich, Dianna G. Fisk, Gail Binkley, Rama Balakrishnan, Maria C. Costanzo, Selina S. Dwight, Benjamin C. Hitz, Kalpana Karra, Robert S. Nash, Shuai Weng, Edith D. Wong, Paul Lloyd, Marek S. Skrzypek, Stuart R. Miyasato, Matt Simison, J. Michael Cherry

G3 (Bethesda) 2014 Mar; 4(3): 389–398. Published online 2013 Dec 27. doi: 10.1534/g3.113.008995

PMCID:: PMC3962479

Abstract Article PDF–1006K

Select item 373496415.

Examining new phylogenetic markers to uncover the evolutionary history of early-diverging fungi: comparing MCM7, TSR1 and rRNA genes for single- and multi-gene analyses of the Kickxellomycotina

E.D. Tretter, E.M. Johnson, Y. Wang, P. Kandel, M.M. White

Persoonia. 2013 Jun; 30: 106–125. Published online 2013 Mar 20. doi: 10.3767/003158513X666394

PMCID:: PMC3734964

Abstract Article PDF–786K

Select item 334608516.

Structure of a Yeast Dyn2-Nup159 Complex and Molecular Basis for Dynein Light Chain-Nuclear Pore Interaction

Erin M. Romes, Ashutosh Tripathy, Kevin C. Slep

J Biol Chem. 2012 May 4; 287(19): 15862–15873. Published online 2012 Mar 12. doi: 10.1074/jbc.M111.336172

PMCID:: PMC3346085

Abstract Article PDF–4.2M

Select item 324503417.

Saccharomyces Genome Database: the genomics resource of budding yeast

J. Michael Cherry, Eurie L. Hong, Craig Amundsen, Rama Balakrishnan, Gail Binkley, Esther T. Chan, Karen R. Christie, Maria C. Costanzo, Selina S. Dwight, Stacia R. Engel, Dianna G. Fisk, Jodi E. Hirschman, Benjamin C. Hitz, Kalpana Karra, Cynthia J. Krieger, Stuart R. Miyasato, Rob S. Nash, Julie Park, Marek S. Skrzypek, Matt Simison, Shuai Weng, Edith D. Wong

Nucleic Acids Res. 2012 Jan; 40(Database issue): D700–D705. Published online 2011 Nov 21. doi: 10.1093/nar/gkr1029

PMCID:: PMC3245034

Abstract Article PDF–103K

Select item 317497718.

A Single Heterochromatin Boundary Element Imposes Position-Independent Antisilencing Activity in Saccharomyces cerevisiae Minichromosomes

Sangita A. Chakraborty, Robert T. Simpson, Sergei A. Grigoryev

PLoS One. 2011; 6(9): e24835. Published online 2011 Sep 16. doi: 10.1371/journal.pone.0024835

PMCID:: PMC3174977

Abstract Article PDF–1.4M

Select item 304012219.

Saccharomyces cerevisiae S288C genome annotation: a working hypothesis

Dianna G. Fisk, Catherine A. Ball, Kara Dolinski, Stacia R. Engel, Eurie L. Hong, Laurie Issel-Tarver, Katja Schwartz, Anand Sethuraman, David Botstein, J. Michael Cherry, The Saccharomyces Genome Database Project

Yeast. Author manuscript; available in PMC 2011 Feb 16.

Published in final edited form as: Yeast. 2006 Sep; 23(12): 857–865. doi: 10.1002/yea.1400