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Items: 1 to 20 of 46

1.
A RAB7A phosphoswitch coordinates Rubicon Homology protein regulation of Parkin-dependent mitophagy
Dan A. Tudorica, Bishal Basak, Alexia S. Puerta Cordova, Grace Khuu, Kevin Rose, Michael Lazarou, Erika L.F. Holzbaur, James H. Hurley
J Cell Biol. 2024 Jul 1; 223(7): e202309015. Published online 2024 May 10. doi: 10.1083/jcb.202309015
PMCID:
PMC11090050
AbstractArticlePDF–5.4M
2.
Neuronal Rubicon Represses Extracellular APP/Amyloid β Deposition in Alzheimer’s Disease
Sandra Espinoza, Felipe Grunenwald, Wileidy Gomez, Felipe García, Lorena Abarzúa-Catalan, Sebastián Oyarce-Pezoa, Maria Fernanda Hernandez, Bastián I. Cortés, Markus Uhrig, Daniela P. Ponce, Claudia Durán-Aniotz, Claudio Hetz, Carol D. SanMartín, Victor H. Cornejo, Fernando Ezquer, Valentina Parra, Maria Isabel Behrens, Patricio A. Manque, Diego Rojas-Rivera, René L. Vidal, Ute Woehlbier, Melissa Nassif
Cells. 2022 Jun; 11(12): 1860. Published online 2022 Jun 7. doi: 10.3390/cells11121860
PMCID:
PMC9221152
AbstractArticlePDF–6.9M
3.
OpenCell: proteome-scale endogenous tagging enables the cartography of human cellular organization
Nathan H. Cho, Keith C. Cheveralls, Andreas-David Brunner, Kibeom Kim, André C. Michaelis, Preethi Raghavan, Hirofumi Kobayashi, Laura Savy, Jason Y. Li, Hera Canaj, James Y.S. Kim, Edna M. Stewart, Christian Gnann, Frank McCarthy, Joana P. Cabrera, Rachel M. Brunetti, Bryant B. Chhun, Greg Dingle, Marco Y. Hein, Bo Huang, Shalin B. Mehta, Jonathan S. Weissman, Rafael Gómez-Sjöberg, Daniel N. Itzhak, Loic A. Royer, Matthias Mann, Manuel D. Leonetti
Science. Author manuscript; available in PMC 2022 Sep 11.
Published in final edited form as: Science. 2022 Mar 11; 375(6585): eabi6983. Published online 2022 Mar 11. doi: 10.1126/science.abi6983
PMCID:
PMC9119736
AbstractArticlePDF–3.3M
4.
Epigenome‐wide three‐way interaction study identifies a complex pattern between TRIM27, KIAA0226, and smoking associated with overall survival of early‐stage NSCLC
Xinyu Ji, Lijuan Lin, Juanjuan Fan, Yi Li, Yongyue Wei, Sipeng Shen, Li Su, Andrea Shafer, Maria Moksnes Bjaanæs, Anna Karlsson, Maria Planck, Johan Staaf, Åslaug Helland, Manel Esteller, Ruyang Zhang, Feng Chen, David C. Christiani
Mol Oncol. 2022 Feb; 16(3): 717–731. Published online 2022 Jan 7. doi: 10.1002/1878-0261.13167
PMCID:
PMC8807353
AbstractArticlePDF–2.0M
5.
CUL3 (cullin 3)-mediated ubiquitination and degradation of BECN1 (beclin 1) inhibit autophagy and promote tumor progression
Xuan Li, Kai-Bin Yang, Wei Chen, Jia Mai, Xiao-Qi Wu, Ting Sun, Rui-Yan Wu, Lin Jiao, Dan-Dan Li, Jiao Ji, Hai-Liang Zhang, Yan Yu, Yu-Hong Chen, Gong-Kan Feng, Rong Deng, Jun-Dong Li, Xiao-Feng Zhu
Autophagy. 2021; 17(12): 4323–4340. Published online 2021 May 12. doi: 10.1080/15548627.2021.1912270
PMCID:
PMC8726624
AbstractArticlePDF–26M
6.
BioID reveals an ATG9A interaction with ATG13‐ATG101 in the degradation of p62/SQSTM1‐ubiquitin clusters
Ashari R Kannangara, Daniel M Poole, Colten M McEwan, Joshua C Youngs, Vajira K Weerasekara, Alex M Thornock, Misael T Lazaro, Eranga R Balasooriya, Laura M Oh, Erik J Soderblom, Jonathan J Lee, Daniel L Simmons, Joshua L Andersen
EMBO Rep. 2021 Oct 5; 22(10): e51136. Published online 2021 Aug 9. doi: 10.15252/embr.202051136
PMCID:
PMC8490997
AbstractArticlePDF–4.5M
7.
STYK1 promotes autophagy through enhancing the assembly of autophagy-specific class III phosphatidylinositol 3-kinase complex I
Cefan Zhou, Xuehong Qian, Miao Hu, Rui Zhang, Nanxi Liu, Yuan Huang, Jing Yang, Juan Zhang, Hua Bai, Yuyan Yang, Yefu Wang, Declan Ali, Marek Michalak, Xing-Zhen Chen, Jingfeng Tang
Autophagy. 2020; 16(10): 1786–1806. Published online 2019 Nov 7. doi: 10.1080/15548627.2019.1687212
PMCID:
PMC8386619
AbstractArticlePDF–10M
8.
ORF3a-Mediated Incomplete Autophagy Facilitates Severe Acute Respiratory Syndrome Coronavirus-2 Replication
Yafei Qu, Xin Wang, Yunkai Zhu, Weili Wang, Yuyan Wang, Gaowei Hu, Chengrong Liu, Jingjiao Li, Shanhui Ren, Maggie Z. X. Xiao, Zhenshan Liu, Chunxia Wang, Joyce Fu, Yucai Zhang, Ping Li, Rong Zhang, Qiming Liang
Front Cell Dev Biol. 2021; 9: 716208. Published online 2021 Jul 27. doi: 10.3389/fcell.2021.716208
PMCID:
PMC8353283
AbstractArticlePDF–2.0M
9.
Dual Proteome-scale Networks Reveal Cell-specific Remodeling of the Human Interactome
Edward L. Huttlin, Raphael J. Bruckner, Jose Navarrete-Perea, Joe R. Cannon, Kurt Baltier, Fana Gebreab, Melanie P. Gygi, Alexandra Thornock, Gabriela Zarraga, Stanley Tam, John Szpyt, Brandon M. Gassaway, Alexandra Panov, Hannah Parzen, Sipei Fu, Arvene Golbazi, Eila Maenpaa, Keegan Stricker, Sanjukta Guha Thakurta, Tian Zhang, Ramin Rad, Joshua Pan, David P. Nusinow, Joao A. Paulo, Devin K. Schweppe, Laura Pontano Vaites, J. Wade Harper, Steven P. Gygi
Cell. Author manuscript; available in PMC 2022 May 27.
Published in final edited form as: Cell. 2021 May 27; 184(11): 3022–3040.e28. Published online 2021 May 6. doi: 10.1016/j.cell.2021.04.011
PMCID:
PMC8165030
AbstractArticlePDF–2.2M
10.
Hepatitis C virus enhances Rubicon expression, leading to autophagy inhibition and intracellular innate immune activation
Yuto Shiode, Hayato Hikita, Satoshi Tanaka, Kumiko Shirai, Akira Doi, Sadatsugu Sakane, Yugo Kai, Tasuku Nakabori, Ryoko Yamada, Takahiro Kodama, Ryohei Narumi, Ryotaro Sakamori, Hidetoshi Eguchi, Takeshi Tomonaga, Tomohide Tatsumi, Tetsuo Takehara
Sci Rep. 2020; 10: 15290. Published online 2020 Sep 17. doi: 10.1038/s41598-020-72294-y
PMCID:
PMC7498609
AbstractArticlePDF–1.9M
11.
A fine-tuning mechanism underlying self-control for autophagy: deSUMOylation of BECN1 by SENP3
Kejia Liu, Chu Guo, Yimin Lao, Jie Yang, Fei Chen, Yuzheng Zhao, Yi Yang, Jie Yang, Jing Yi
Autophagy. 2020; 16(6): 975–990. Published online 2019 Aug 2. doi: 10.1080/15548627.2019.1647944
PMCID:
PMC7469448
AbstractArticlePDF–6.2M
12.
Structural basis for autophagy inhibition by the human Rubicon–Rab7 complex
Hersh K. Bhargava, Keisuke Tabata, Jordan M. Byck, Maho Hamasaki, Daniel P. Farrell, Ivan Anishchenko, Frank DiMaio, Young Jun Im, Tamotsu Yoshimori, James H. Hurley
Proc Natl Acad Sci U S A. 2020 Jul 21; 117(29): 17003–17010. Published online 2020 Jul 6. doi: 10.1073/pnas.2008030117
PMCID:
PMC7382272
AbstractArticlePDF–2.8M
13.
RIG-I regulates myeloid differentiation by promoting TRIM25-mediated ISGylation
Song-Fang Wu, Li Xia, Xiao-Dong Shi, Yu-Jun Dai, Wei-Na Zhang, Jun-Mei Zhao, Wu Zhang, Xiang-Qin Weng, Jing Lu, Huang-Ying Le, Sheng-ce Tao, Jiang Zhu, Zhu Chen, Yue-Ying Wang, Saijuan Chen
Proc Natl Acad Sci U S A. 2020 Jun 23; 117(25): 14395–14404. Published online 2020 Jun 8. doi: 10.1073/pnas.1918596117
PMCID:
PMC7322067
AbstractArticlePDF–2.7M
14.
A reference map of the human binary protein interactome
Katja Luck, Dae-Kyum Kim, Luke Lambourne, Kerstin Spirohn, Bridget E. Begg, Wenting Bian, Ruth Brignall, Tiziana Cafarelli, Francisco J. Campos-Laborie, Benoit Charloteaux, Dongsic Choi, Atina G. Coté, Meaghan Daley, Steven Deimling, Alice Desbuleux, Amélie Dricot, Marinella Gebbia, Madeleine F. Hardy, Nishka Kishore, Jennifer J. Knapp, István A. Kovács, Irma Lemmens, Miles W. Mee, Joseph C. Mellor, Carl Pollis, Carles Pons, Aaron D. Richardson, Sadie Schlabach, Bridget Teeking, Anupama Yadav, Mariana Babor, Dawit Balcha, Omer Basha, Christian Bowman-Colin, Suet-Feung Chin, Soon Gang Choi, Claudia Colabella, Georges Coppin, Cassandra D’Amata, David De Ridder, Steffi De Rouck, Miquel Duran-Frigola, Hanane Ennajdaoui, Florian Goebels, Liana Goehring, Anjali Gopal, Ghazal Haddad, Elodie Hatchi, Mohamed Helmy, Yves Jacob, Yoseph Kassa, Serena Landini, Roujia Li, Natascha van Lieshout, Andrew MacWilliams, Dylan Markey, Joseph N. Paulson, Sudharshan Rangarajan, John Rasla, Ashyad Rayhan, Thomas Rolland, Adriana San-Miguel, Yun Shen, Dayag Sheykhkarimli, Gloria M. Sheynkman, Eyal Simonovsky, Murat Taşan, Alexander Tejeda, Vincent Tropepe, Jean-Claude Twizere, Yang Wang, Robert J. Weatheritt, Jochen Weile, Yu Xia, Xinping Yang, Esti Yeger-Lotem, Quan Zhong, Patrick Aloy, Gary D. Bader, Javier De Las Rivas, Suzanne Gaudet, Tong Hao, Janusz Rak, Jan Tavernier, David E. Hill, Marc Vidal, Frederick P. Roth, Michael A. Calderwood
Nature. Author manuscript; available in PMC 2020 Oct 8.
Published in final edited form as: Nature. 2020 Apr; 580(7803): 402–408. Published online 2020 Apr 8. doi: 10.1038/s41586-020-2188-x
PMCID:
PMC7169983
AbstractArticlePDF–5.4M
15.
Identification of highly potent and selective inhibitor, TIPTP, of the p22phox-Rubicon axis as a therapeutic agent for rheumatoid arthritis
Ye-Ram Kim, Jae-Sung Kim, Su-Jin Gu, Sungsin Jo, Sojin Kim, Sun Young Kim, Daeun Lee, Kiseok Jang, Hyunah Choo, Tae-Hwan Kim, Jae U. Jung, Sun-Joon Min, Chul-Su Yang
Sci Rep. 2020; 10: 4570. Published online 2020 Mar 12. doi: 10.1038/s41598-020-61630-x
PMCID:
PMC7067850
AbstractArticlePDF–7.9M
16.
HUNK Phosphorylates Rubicon to Support Autophagy
Joelle N. Zambrano, Scott T. Eblen, Melissa Abt, J. Matthew Rhett, Robin Muise-Helmericks, Elizabeth S. Yeh
Int J Mol Sci. 2019 Nov; 20(22): 5813. Published online 2019 Nov 19. doi: 10.3390/ijms20225813
PMCID:
PMC6888122
AbstractArticlePDF–1.9M
17.
Rubicon: LC3-associated phagocytosis and beyond
Sing-Wai Wong, Payel Sil, Jennifer Martinez
FEBS J. Author manuscript; available in PMC 2019 Oct 7.
Published in final edited form as: FEBS J. 2018 Apr; 285(8): 1379–1388. Published online 2017 Dec 29. doi: 10.1111/febs.14354
PMCID:
PMC6779045
AbstractArticlePDF–1.0M
18.
The midbody interactome reveals unexpected roles for PP1 phosphatases in cytokinesis
Luisa Capalbo, Zuni I. Bassi, Marco Geymonat, Sofia Todesca, Liviu Copoiu, Anton J. Enright, Giuliano Callaini, Maria Giovanna Riparbelli, Lu Yu, Jyoti S. Choudhary, Enrico Ferrero, Sally Wheatley, Max E. Douglas, Masanori Mishima, Pier Paolo D’Avino
Nat Commun. 2019; 10: 4513. Published online 2019 Oct 4. doi: 10.1038/s41467-019-12507-9
PMCID:
PMC6778137
AbstractArticlePDF–7.8M
19.
Ubiquitination of UVRAG by SMURF1 promotes autophagosome maturation and inhibits hepatocellular carcinoma growth
Xing Feng, Yanyan Jia, Yuyu Zhang, Fei Ma, Yuekun Zhu, Xuehui Hong, Qingxin Zhou, Ruixing He, Heng Zhang, Junfei Jin, Daxun Piao, He Huang, Qinghua Li, Xingfeng Qiu, Zhiyong Zhang
Autophagy. 2019; 15(7): 1130–1149. Published online 2019 Jan 27. doi: 10.1080/15548627.2019.1570063
PMCID:
PMC6613838
AbstractArticlePDF–10M
20.
Histone Interaction Landscapes Visualized by Crosslinking Mass Spectrometry in Intact Cell Nuclei
Domenico Fasci, Hugo van Ingen, Richard A. Scheltema, Albert J. R. Heck
Mol Cell Proteomics. 2018 Oct; 17(10): 2018–2033. Published online 2018 Jul 18. doi: 10.1074/mcp.RA118.000924
PMCID:
PMC6166682
AbstractArticlePDF–3.8M

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