PMC Links for GEO Profiles (Select 109408338) - PMC

Links from GEO Profiles

Items: 1 to 20 of 51

<< First< Prev

Page of 3

Select item 100339371.

Assessment of community efforts to advance network-based prediction of protein–protein interactions

Xu-Wen Wang, Lorenzo Madeddu, Kerstin Spirohn, Leonardo Martini, Adriano Fazzone, Luca Becchetti, Thomas P. Wytock, István A. Kovács, Olivér M. Balogh, Bettina Benczik, Mátyás Pétervári, Bence Ágg, Péter Ferdinandy, Loan Vulliard, Jörg Menche, Stefania Colonnese, Manuela Petti, Gaetano Scarano, Francesca Cuomo, Tong Hao, Florent Laval, Luc Willems, Jean-Claude Twizere, Marc Vidal, Michael A. Calderwood, Enrico Petrillo, Albert-László Barabási, Edwin K. Silverman, Joseph Loscalzo, Paola Velardi, Yang-Yu Liu

Nat Commun. 2023; 14: 1582. Published online 2023 Mar 22. doi: 10.1038/s41467-023-37079-7

PMCID:: PMC10033937

Abstract Article PDF–1.5M

Select item 88065762.

CircRASSF2 acts as a prognostic factor and promotes breast cancer progression by modulating miR-1205/HOXA1 axis

Wei Zhong, Lei Bao, Yangyi Yuan, Yanzhi Meng

Bioengineered. 2021; 12(1): 3014–3028. Published online 2021 Jun 28. doi: 10.1080/21655979.2021.1933300

PMCID:: PMC8806576

Abstract Article PDF–2.4M

Select item 81650303.

Dual Proteome-scale Networks Reveal Cell-specific Remodeling of the Human Interactome

Edward L. Huttlin, Raphael J. Bruckner, Jose Navarrete-Perea, Joe R. Cannon, Kurt Baltier, Fana Gebreab, Melanie P. Gygi, Alexandra Thornock, Gabriela Zarraga, Stanley Tam, John Szpyt, Brandon M. Gassaway, Alexandra Panov, Hannah Parzen, Sipei Fu, Arvene Golbazi, Eila Maenpaa, Keegan Stricker, Sanjukta Guha Thakurta, Tian Zhang, Ramin Rad, Joshua Pan, David P. Nusinow, Joao A. Paulo, Devin K. Schweppe, Laura Pontano Vaites, J. Wade Harper, Steven P. Gygi

Cell. Author manuscript; available in PMC 2022 May 27.

Published in final edited form as: Cell. 2021 May 27; 184(11): 3022–3040.e28. Published online 2021 May 6. doi: 10.1016/j.cell.2021.04.011

PMCID:: PMC8165030

Abstract Article PDF–2.2M

Select item 80090484.

Impact of cytosine methylation on DNA binding specificities of human transcription factors

Yimeng Yin, Ekaterina Morgunova, Arttu Jolma, Eevi Kaasinen, Biswajyoti Sahu, Syed Khund-Sayeed, Pratyush K. Das, Teemu Kivioja, Kashyap Dave, Fan Zhong, Kazuhiro R. Nitta, Minna Taipale, Alexander Popov, Paul A. Ginno, Silvia Domcke, Jian Yan, Dirk Schübeler, Charles Vinson, Jussi Taipale

Science. Author manuscript; available in PMC 2021 Mar 30.

Published in final edited form as: Science. 2017 May 5; 356(6337): eaaj2239. doi: 10.1126/science.aaj2239

PMCID:: PMC8009048

Abstract Article PDF–2.6M

Select item 78447915.

MicroRNA-433 Represses Proliferation and Invasion of Colon Cancer Cells by Targeting Homeobox A1

Heming Li, Junfeng Li, Taisheng Yang, Shuwen Lin, Heng Li

Oncol Res. 2018; 26(2): 315–322. Published online 2018 Mar 5. doi: 10.3727/096504017X15067856789781

PMCID:: PMC7844791

Abstract Article PDF–18M

Select item 77450426.

LncRNA HOTAIRM1 promotes MDSC expansion and suppressive functions through the HOXA1-miR124 axis during HCV infection

Bal Krishna Chand Thakuri, Jinyu Zhang, Juan Zhao, Lam N. Nguyen, Lam N. T. Nguyen, Sushant Khanal, Dechao Cao, Xindi Dang, Madison Schank, Xiao Y. Wu, Zheng D. Morrison, Mohamed El Gazzar, Zhengke Li, Yong Jiang, Shunbin Ning, Ling Wang, Jonathan P. Moorman, Zhi Q. Yao

Sci Rep. 2020; 10: 22033. Published online 2020 Dec 16. doi: 10.1038/s41598-020-78786-1

PMCID:: PMC7745042

Abstract Article PDF–3.3M

Select item 76742507.

LncRNA HOTAIRM1 promotes MDSC expansion and suppressive functions through up-regulating HOXA1 expression during latent HIV infection

Jinyu Zhang, Bal Krishna Chand Thakuri, Juan Zhao, Lam N. Nguyen, Lam N.T. Nguyen, Dechao Cao, Xindi Dang, Sushant Khanal, Madison Schank, Zeyuan Lu, Xiao Y. Wu, Zheng D. Morrison, Mohamed El Gazzar, Zhengke Li, Yong Jiang, Shunbin Ning, Ling Wang, Jonathan P. Moorman, Zhi Q. Yao

AIDS. Author manuscript; available in PMC 2021 Dec 1.

Published in final edited form as: AIDS. 2020 Dec 1; 34(15): 2211–2221. doi: 10.1097/QAD.0000000000002700

PMCID:: PMC7674250

Abstract Article PDF–1.1M

Select item 73460238.

Long non-coding RNA SNHG1 activates HOXA1 expression via sponging miR-193a-5p in breast cancer progression

Jun Li, Tianyu Zeng, Wei Li, Hao Wu, Chunxiao Sun, Fan Yang, Mengzhu Yang, Ziyi Fu, Yongmei Yin

Aging (Albany NY) 2020 Jun 15; 12(11): 10223–10234. Published online 2020 Jun 3. doi: 10.18632/aging.103123

PMCID:: PMC7346023

Abstract Article PDF–1.8M

Select item 71699839.

A reference map of the human binary protein interactome

Katja Luck, Dae-Kyum Kim, Luke Lambourne, Kerstin Spirohn, Bridget E. Begg, Wenting Bian, Ruth Brignall, Tiziana Cafarelli, Francisco J. Campos-Laborie, Benoit Charloteaux, Dongsic Choi, Atina G. Coté, Meaghan Daley, Steven Deimling, Alice Desbuleux, Amélie Dricot, Marinella Gebbia, Madeleine F. Hardy, Nishka Kishore, Jennifer J. Knapp, István A. Kovács, Irma Lemmens, Miles W. Mee, Joseph C. Mellor, Carl Pollis, Carles Pons, Aaron D. Richardson, Sadie Schlabach, Bridget Teeking, Anupama Yadav, Mariana Babor, Dawit Balcha, Omer Basha, Christian Bowman-Colin, Suet-Feung Chin, Soon Gang Choi, Claudia Colabella, Georges Coppin, Cassandra D’Amata, David De Ridder, Steffi De Rouck, Miquel Duran-Frigola, Hanane Ennajdaoui, Florian Goebels, Liana Goehring, Anjali Gopal, Ghazal Haddad, Elodie Hatchi, Mohamed Helmy, Yves Jacob, Yoseph Kassa, Serena Landini, Roujia Li, Natascha van Lieshout, Andrew MacWilliams, Dylan Markey, Joseph N. Paulson, Sudharshan Rangarajan, John Rasla, Ashyad Rayhan, Thomas Rolland, Adriana San-Miguel, Yun Shen, Dayag Sheykhkarimli, Gloria M. Sheynkman, Eyal Simonovsky, Murat Taşan, Alexander Tejeda, Vincent Tropepe, Jean-Claude Twizere, Yang Wang, Robert J. Weatheritt, Jochen Weile, Yu Xia, Xinping Yang, Esti Yeger-Lotem, Quan Zhong, Patrick Aloy, Gary D. Bader, Javier De Las Rivas, Suzanne Gaudet, Tong Hao, Janusz Rak, Jan Tavernier, David E. Hill, Marc Vidal, Frederick P. Roth, Michael A. Calderwood

Nature. Author manuscript; available in PMC 2020 Oct 8.

Published in final edited form as: Nature. 2020 Apr; 580(7803): 402–408. Published online 2020 Apr 8. doi: 10.1038/s41586-020-2188-x

PMCID:: PMC7169983

Abstract Article PDF–5.4M

Select item 674264610.

Extensive disruption of protein interactions by genetic variants across the allele frequency spectrum in human populations

Robert Fragoza, Jishnu Das, Shayne D. Wierbowski, Jin Liang, Tina N. Tran, Siqi Liang, Juan F. Beltran, Christen A. Rivera-Erick, Kaixiong Ye, Ting-Yi Wang, Li Yao, Matthew Mort, Peter D. Stenson, David N. Cooper, Xiaomu Wei, Alon Keinan, John C. Schimenti, Andrew G. Clark, Haiyuan Yu

Nat Commun. 2019; 10: 4141. Published online 2019 Sep 12. doi: 10.1038/s41467-019-11959-3

PMCID:: PMC6742646

Abstract Article PDF–1.2M

Select item 642327811.

Network-based prediction of protein interactions

István A. Kovács, Katja Luck, Kerstin Spirohn, Yang Wang, Carl Pollis, Sadie Schlabach, Wenting Bian, Dae-Kyum Kim, Nishka Kishore, Tong Hao, Michael A. Calderwood, Marc Vidal, Albert-László Barabási

Nat Commun. 2019; 10: 1240. Published online 2019 Mar 18. doi: 10.1038/s41467-019-09177-y

PMCID:: PMC6423278

Abstract Article PDF–1.1M

Select item 631495712.

An interactome perturbation framework prioritizes damaging missense mutations for developmental disorders

Siwei Chen, Robert Fragoza, Lambertus Klei, Yuan Liu, Jiebiao Wang, Kathryn Roeder, Bernie Devlin, Haiyuan Yu

Nat Genet. Author manuscript; available in PMC 2019 Jul 1.

Published in final edited form as: Nat Genet. 2018 Jul; 50(7): 1032–1040. Published online 2018 Jun 11. doi: 10.1038/s41588-018-0130-z

PMCID:: PMC6314957

Abstract Article PDF–1.3M

Select item 620804313.

Over-expressed lncRNA HOTAIRM1 promotes tumor growth and invasion through up-regulating HOXA1 and sequestering G9a/EZH2/Dnmts away from the HOXA1 gene in glioblastoma multiforme

Qi Li, Chengya Dong, Jiayue Cui, Yubo Wang, Xinyu Hong

J Exp Clin Cancer Res. 2018; 37: 265. Published online 2018 Oct 30. doi: 10.1186/s13046-018-0941-x

PMCID:: PMC6208043

Abstract Article PDF–5.2M

Select item 595864014.

Upregulation of HOXA1 promotes tumorigenesis and development of non-small cell lung cancer: A comprehensive investigation based on reverse transcription-quantitative polymerase chain reaction and bioinformatics analysis

Yu Zhang, Xiao-Jiao Li, Rong-Quan He, Xiao Wang, Tong-Tong Zhang, Yuan Qin, Rui Zhang, Yun Deng, Han-Lin Wang, Dian-Zhong Luo, Gang Chen

Int J Oncol. 2018 Jul; 53(1): 73–86. Published online 2018 Apr 16. doi: 10.3892/ijo.2018.4372

PMCID:: PMC5958640

Abstract Article PDF–1.5M

Select item 589011815.

Long Non-Coding RNA HOXA Transcript Antisense RNA Myeloid-Specific 1–HOXA1 Axis Downregulates the Immunosuppressive Activity of Myeloid-Derived Suppressor Cells in Lung Cancer

Xinyu Tian, Jie Ma, Ting Wang, Jie Tian, Yue Zhang, Lingxiang Mao, Huaxi Xu, Shengjun Wang

Front Immunol. 2018; 9: 473. Published online 2018 Mar 12. doi: 10.3389/fimmu.2018.00473

Correction in:: Front Immunol. 2019; 10: 2929.

PMCID:: PMC5890118

Abstract Article PDF–2.4M

Select item 570387816.

The STUbL RNF4 regulates protein group SUMOylation by targeting the SUMO conjugation machinery

Ramesh Kumar, Román González-Prieto, Zhenyu Xiao, Matty Verlaan-de Vries, Alfred C. O. Vertegaal

Nat Commun. 2017; 8: 1809. Published online 2017 Nov 27. doi: 10.1038/s41467-017-01900-x

PMCID:: PMC5703878

Abstract Article PDF–3.7M

Select item 553161117.

Architecture of the human interactome defines protein communities and disease networks

Edward L. Huttlin, Raphael J. Bruckner, Joao A. Paulo, Joe R. Cannon, Lily Ting, Kurt Baltier, Greg Colby, Fana Gebreab, Melanie P. Gygi, Hannah Parzen, John Szpyt, Stanley Tam, Gabriela Zarraga, Laura Pontano-Vaites, Sharan Swarup, Anne E. White, Devin K. Schweppe, Ramin Rad, Brian K. Erickson, Robert A. Obar, K.G. Guruharsha, Kejie Li, Spyros Artavanis-Tsakonas, Steven P. Gygi, J. Wade Harper

Nature. Author manuscript; available in PMC 2017 Nov 17.

Published in final edited form as: Nature. 2017 May 25; 545(7655): 505–509. Published online 2017 May 17. doi: 10.1038/nature22366

PMCID:: PMC5531611

Abstract Article PDF–2.7M

Select item 535485518.

MicroRNA-30e reduces cell growth and enhances drug sensitivity to gefitinib in lung carcinoma

Zhi-Qiang Ning, Hai-lin Lu, Chao Chen, Lin Wang, Wei Cai, Yan Li, Ting-hua Cao, Jing Zhu, Yong-Qian Shu, Hua Shen

Oncotarget. 2017 Jan 17; 8(3): 4572–4581. Published online 2016 Dec 15. doi: 10.18632/oncotarget.13944

PMCID:: PMC5354855

Abstract Article PDF–2.8M

Select item 500975019.

HOXA1 binds RBCK1/HOIL-1 and TRAF2 and modulates the TNF/NF-κB pathway in a transcription-independent manner

Arnaud Taminiau, Amandine Draime, Janne Tys, Barbara Lambert, Julie Vandeputte, Nathan Nguyen, Patricia Renard, Dirk Geerts, René Rezsöhazy

Nucleic Acids Res. 2016 Sep 6; 44(15): 7331–7349. Published online 2016 Jul 5. doi: 10.1093/nar/gkw606

PMCID:: PMC5009750

Abstract Article PDF–6.5M

Select item 488498020.

Genomic loss of EZH2 leads to epigenetic modifications and overexpression of the HOX gene clusters in myelodysplastic syndrome

Feng Xu, Li Liu, Chun-Kang Chang, Qi He, Ling-Yun Wu, Zheng Zhang, Wen-Hui Shi, Juan Guo, Yang Zhu, You-Shan Zhao, Shu-Cheng Gu, Cheng-Ming Fei, Xiao Li

Oncotarget. 2016 Feb 16; 7(7): 8119–8130. Published online 2016 Jan 23. doi: 10.18632/oncotarget.6992

PMCID:: PMC4884980

Abstract Article PDF–2.8M

PMC

Result Filters

Article attributes

Text availability

Publication date

Custom date range

Research Funder

Additional filters

Display Settings:

Send to:

Links from GEO Profiles

Items: 1 to 20 of 51

Display Settings:

Send to:

Supplemental Content

Find related data

Recent activity