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Items: 19

1.
A systematic proximity ligation approach to studying protein‐substrate specificity identifies the substrate spectrum of the Ssh1 translocon
Nir Cohen, Naama Aviram, Maya Schuldiner
EMBO J. 2023 Jun; 42(11): e113385. Published online 2023 Apr 19. doi: 10.15252/embj.2022113385
PMCID:
PMC10233368
AbstractArticlePDF–1.2M
2.
A balancing act: interactions within NuA4/TIP60 regulate picNuA4 function in Saccharomyces cerevisiae and humans
Phoebe Y T Lu, Alyssa C Kirlin, Maria J Aristizabal, Hilary T Brewis, Nancy Lévesque, Dheva T Setiaputra, Nikita Avvakumov, Joris J Benschop, Marian Groot Koerkamp, Frank C P Holstege, Nevan J Krogan, Calvin K Yip, Jacques Côté, Michael S Kobor
Genetics. 2022 Nov; 222(3): iyac136. Published online 2022 Sep 6. doi: 10.1093/genetics/iyac136
PMCID:
PMC9630986
AbstractArticlePDF–2.2M
3.
New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources
Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry
Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224
PMCID:
PMC9209811
AbstractArticlePDF–818K
4.
Comprehensive Synthetic Genetic Array Analysis of Alleles That Interact with Mutation of the Saccharomyces cerevisiae RecQ Helicases Hrq1 and Sgs1
Elsbeth Sanders, Phoebe A. Nguyen, Cody M. Rogers, Matthew L. Bochman
G3 (Bethesda) 2020 Dec; 10(12): 4359–4368. Published online 2020 Oct 28. doi: 10.1534/g3.120.401709
PMCID:
PMC7718751
AbstractArticlePDF–1.2M
5.
The chaperone-binding activity of the mitochondrial surface receptor Tom70 protects the cytosol against mitoprotein-induced stress
Sandra Backes, Yury S. Bykov, Tamara Flohr, Markus Räschle, Jialin Zhou, Svenja Lenhard, Lena Krämer, Timo Mühlhaus, Chen Bibi, Cosimo Jann, Justin D. Smith, Lars M. Steinmetz, Doron Rapaport, Zuzana Storchová, Maya Schuldiner, Felix Boos, Johannes M. Herrmann
Cell Rep. Author manuscript; available in PMC 2023 Aug 31.
Published in final edited form as: Cell Rep. 2021 Apr 6; 35(1): 108936. doi: 10.1016/j.celrep.2021.108936
PMCID:
PMC7615001
AbstractArticlePDF–3.4M
6.
Transfer of the Septin Ring to Cytokinetic Remnants in ER stress Directs Age-Sensitive Cell Cycle Re-entry
Jesse T. Chao, Francisco Piña, Masayuki Onishi, Yifat Cohen, Ya-Shiuan Lai, Maya Schuldiner, Maho Niwa
Dev Cell. Author manuscript; available in PMC 2020 Oct 21.
Published in final edited form as: Dev Cell. 2019 Oct 21; 51(2): 173–191.e5. Published online 2019 Sep 26. doi: 10.1016/j.devcel.2019.08.017
PMCID:
PMC7085932
AbstractArticlePDF–2.5M
7.
A global interaction network maps a wiring diagram of cellular function
Michael Costanzo, Benjamin VanderSluis, Elizabeth N. Koch, Anastasia Baryshnikova, Carles Pons, Guihong Tan, Wen Wang, Matej Usaj, Julia Hanchard, Susan D. Lee, Vicent Pelechano, Erin B. Styles, Maximilian Billmann, Jolanda van Leeuwen, Nydia van Dyk, Zhen-Yuan Lin, Elena Kuzmin, Justin Nelson, Jeff S. Piotrowski, Tharan Srikumar, Sondra Bahr, Yiqun Chen, Raamesh Deshpande, Christoph F. Kurat, Sheena C. Li, Zhijian Li, Mojca Mattiazzi Usaj, Hiroki Okada, Natasha Pascoe, Bryan-Joseph San Luis, Sara Sharifpoor, Emira Shuteriqi, Scott W. Simpkins, Jamie Snider, Harsha Garadi Suresh, Yizhao Tan, Hongwei Zhu, Noel Malod-Dognin, Vuk Janjic, Natasa Przulj, Olga G. Troyanskaya, Igor Stagljar, Tian Xia, Yoshikazu Ohya, Anne-Claude Gingras, Brian Raught, Michael Boutros, Lars M. Steinmetz, Claire L. Moore, Adam P. Rosebrock, Amy A. Caudy, Chad L. Myers, Brenda Andrews, Charles Boone
Science. Author manuscript; available in PMC 2017 Oct 30.
Published in final edited form as: Science. 2016 Sep 23; 353(6306): aaf1420. doi: 10.1126/science.aaf1420
PMCID:
PMC5661885
AbstractArticlePDF–2.6M
8.
The Genetic Landscape of a Cell
Michael Costanzo, Anastasia Baryshnikova, Jeremy Bellay, Yungil Kim, Eric D. Spear, Carolyn S. Sevier, Huiming Ding, Judice L.Y. Koh, Kiana Toufighi, Sara Mostafavi, Jeany Prinz, Robert P. St. Onge, Benjamin VanderSluis, Taras Makhnevych, Franco J. Vizeacoumar, Solmaz Alizadeh, Sondra Bahr, Renee L. Brost, Yiqun Chen, Murat Cokol, Raamesh Deshpande, Zhijian Li, Zhen-Yuan Lin, Wendy Liang, Michaela Marback, Jadine Paw, Bryan-Joseph San Luis, Ermira Shuteriqi, Amy Hin Yan Tong, Nydia van Dyk, Iain M. Wallace, Joseph A. Whitney, Matthew T. Weirauch, Guoqing Zhong, Hongwei Zhu, Walid A. Houry, Michael Brudno, Sasan Ragibizadeh, Balázs Papp, Csaba Pál, Frederick P. Roth, Guri Giaever, Corey Nislow, Olga G. Troyanskaya, Howard Bussey, Gary D. Bader, Anne-Claude Gingras, Quaid D. Morris, Philip M. Kim, Chris A. Kaiser, Chad L. Myers, Brenda J. Andrews, Charles Boone
Science. Author manuscript; available in PMC 2017 Sep 15.
Published in final edited form as: Science. 2010 Jan 22; 327(5964): 425–431. doi: 10.1126/science.1180823
PMCID:
PMC5600254
AbstractArticlePDF–2.4M
9.
A Functional Link Between Bir1 and the Saccharomyces cerevisiae Ctf19 Kinetochore Complex Revealed Through Quantitative Fitness Analysis
Vasso Makrantoni, Adam Ciesiolka, Conor Lawless, Josefin Fernius, Adele Marston, David Lydall, Michael J. R. Stark
G3 (Bethesda) 2017 Sep; 7(9): 3203–3215. Published online 2017 Jul 28. doi: 10.1534/g3.117.300089
PMCID:
PMC5592945
AbstractArticlePDF–1.7M
10.
A network of conserved synthetic lethal interactions for exploration of precision cancer therapy
Rohith Srivas, John Paul Shen, Chih Cheng Yang, Su Ming Sun, Jianfeng Li, Andrew M. Gross, James Jensen, Katherine Licon, Ana Bojorquez-Gomez, Kristin Klepper, Justin Huang, Daniel Pekin, Jia L. Xu, Huwate Yeerna, Vignesh Sivaganesh, Leonie Kollenstart, Haico van Attikum, Pedro Aza-Blanc, Robert W. Sobol, Trey Ideker
Mol Cell. Author manuscript; available in PMC 2017 Aug 4.
Published in final edited form as: Mol Cell. 2016 Aug 4; 63(3): 514–525. Published online 2016 Jul 21. doi: 10.1016/j.molcel.2016.06.022
PMCID:
PMC5209245
AbstractArticlePDF–1.6M
11.
Combined Action of Histone Reader Modules Regulates NuA4 Local Acetyltransferase Function but Not Its Recruitment on the Genome
Anne-Lise Steunou, Myriam Cramet, Dorine Rossetto, Maria J. Aristizabal, Nicolas Lacoste, Simon Drouin, Valérie Côté, Eric Paquet, Rhea T. Utley, Nevan Krogan, François Robert, Michael S. Kobor, Jacques Côté
Mol Cell Biol. 2016 Nov 15; 36(22): 2768–2781. Prepublished online 2016 Aug 22. Published online 2016 Oct 28. doi: 10.1128/MCB.00112-16
PMCID:
PMC5086519
AbstractArticlePDF–2.3M
12.
Conditional Genetic Interactions of RTT107, SLX4, and HRQ1 Reveal Dynamic Networks upon DNA Damage in S. cerevisiae
Grace P. Leung, Maria J. Aristizabal, Nevan J. Krogan, Michael S. Kobor
G3 (Bethesda) 2014 Jun; 4(6): 1059–1069. Published online 2014 Apr 2. doi: 10.1534/g3.114.011205
PMCID:
PMC4065249
AbstractArticlePDF–2.3M
13.
A Global Protein Kinase and Phosphatase Interaction Network in Yeast
Ashton Breitkreutz, Hyungwon Choi, Jeffrey R. Sharom, Lorrie Boucher, Victor Neduva, Brett Larsen, Zhen-Yuan Lin, Bobby-Joe Breitkreutz, Chris Stark, Guomin Liu, Jessica Ahn, Danielle Dewar-Darch, Teresa Reguly, Xiaojing Tang, Ricardo Almeida, Zhaohui Steve Qin, Tony Pawson, Anne-Claude Gingras, Alexey I. Nesvizhskii, Mike Tyers
Science. Author manuscript; available in PMC 2014 Apr 11.
Published in final edited form as: Science. 2010 May 21; 328(5981): 1043–1046. doi: 10.1126/science.1176495
PMCID:
PMC3983991
AbstractArticlePDF–1.4M
14.
High-Resolution Profiling of Stationary-Phase Survival Reveals Yeast Longevity Factors and Their Genetic Interactions
Erika Garay, Sergio E. Campos, Jorge González de la Cruz, Ana P. Gaspar, Adrian Jinich, Alexander DeLuna
PLoS Genet. 2014 Feb; 10(2): e1004168. Published online 2014 Feb 27. doi: 10.1371/journal.pgen.1004168
PMCID:
PMC3937222
AbstractArticlePDF–4.9M
15.
Global Analysis of Yeast mRNPs
Sarah F. Mitchell, Saumya Jain, Meipei She, Roy Parker
Nat Struct Mol Biol. Author manuscript; available in PMC 2013 Jul 1.
Published in final edited form as: Nat Struct Mol Biol. 2013 Jan; 20(1): 127–133. Published online 2012 Dec 9. doi: 10.1038/nsmb.2468
PMCID:
PMC3537908
AbstractArticlePDF–1.2M
16.
Functional Organization of the S. cerevisiae Phosphorylation Network
Dorothea Fiedler, Hannes Braberg, Monika Mehta, Gal Chechik, Gerard Cagney, Paromita Mukherjee, Andrea C. Silva, Michael Shales, Sean R. Collins, Sake van Wageningen, Patrick Kemmeren, Frank C. P. Holstege, Jonathan S. Weissman, Michael-Christopher Keogh, Daphne Koller, Kevan M. Shokat, Nevan J. Krogan
Cell. Author manuscript; available in PMC 2010 Apr 19.
Published in final edited form as: Cell. 2009 Mar 6; 136(5): 952–963. doi: 10.1016/j.cell.2008.12.039
PMCID:
PMC2856666
AbstractArticlePDF–3.9M
17.
A novel phosphatidylinositol(3,4,5)P3 pathway in fission yeast
Prasenjit Mitra, Yingjie Zhang, Lucia E. Rameh, Maria P. Ivshina, Dannel McCollum, John J. Nunnari, Gregory M. Hendricks, Monica L. Kerr, Seth J. Field, Lewis C. Cantley, Alonzo H. Ross
J Cell Biol. 2004 Jul 19; 166(2): 205–211. doi: 10.1083/jcb.200404150
PMCID:
PMC2172303
AbstractArticlePDF–1.5M
18.
Reconstitution of the mammalian PI3K/PTEN/Akt pathway in yeast
Isabel Rodríguez-Escudero, Françoise M. Roelants, Jeremy Thorner, César Nombela, María Molina, Víctor J. Cid
Biochem J. 2005 Sep 1; 390(Pt 2): 613–623. Prepublished online 2005 May 25. Published online 2005 Aug 23. doi: 10.1042/BJ20050574
PMCID:
PMC1198941
AbstractArticlePDF–512K
19.
TEP1, the yeast homolog of the human tumor suppressor gene PTEN/MMAC1/TEP1, is linked to the phosphatidylinositol pathway and plays a role in the developmental process of sporulation
Jennifer Heymont, Ludmilla Berenfeld, Jennifer Collins, Alexandra Kaganovich, Bradford Maynes, Aaron Moulin, Irina Ratskovskaya, Pak P. Poon, Gerald C. Johnston, Margarita Kamenetsky, John DeSilva, Hong Sun, Gregory A. Petsko, JoAnne Engebrecht
Proc Natl Acad Sci U S A. 2000 Nov 7; 97(23): 12672–12677. doi: 10.1073/pnas.97.23.12672
PMCID:
PMC18822
AbstractArticlePDF–159K

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