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    Items: 1 to 20 of 31

    1.
    K48- and K63-linked ubiquitin chain interactome reveals branch- and length-specific ubiquitin interactors
    Anita Waltho, Oliver Popp, Christopher Lenz, Lukas Pluska, Mahil Lambert, Volker Dötsch, Philipp Mertins, Thomas Sommer
    Life Sci Alliance. 2024 Aug; 7(8): e202402740. Published online 2024 May 21. doi: 10.26508/lsa.202402740
    PMCID:
    PMC11109483
    AbstractArticlePDF–2.9M
    2.
    Protein interaction network revealed by quantitative proteomic analysis links TFIIB to multiple aspects of the transcription cycle
    Michael J. O’Brien, Athar Ansari
    Biochim Biophys Acta Proteins Proteom. Author manuscript; available in PMC 2024 Feb 16.
    Published in final edited form as: Biochim Biophys Acta Proteins Proteom. 2024 Jan 1; 1872(1): 140968. Published online 2023 Oct 19. doi: 10.1016/j.bbapap.2023.140968
    PMCID:
    PMC10872477
    AbstractArticlePDF–1.7M
    3.
    The social and structural architecture of the yeast protein interactome
    André C. Michaelis, Andreas-David Brunner, Maximilian Zwiebel, Florian Meier, Maximilian T. Strauss, Isabell Bludau, Matthias Mann
    Nature. 2023; 624(7990): 192–200. Published online 2023 Nov 15. doi: 10.1038/s41586-023-06739-5
    PMCID:
    PMC10700138
    AbstractArticlePDF–20M
    4.
    A proteomic screen of Ty1 integrase partners identifies the protein kinase CK2 as a regulator of Ty1 retrotransposition
    Anastasia Barkova, Indranil Adhya, Christine Conesa, Amna Asif-Laidin, Amandine Bonnet, Elise Rabut, Carine Chagneau, Pascale Lesage, Joël Acker
    Mob DNA. 2022; 13: 26. Published online 2022 Nov 18. doi: 10.1186/s13100-022-00284-0
    PMCID:
    PMC9673352
    AbstractArticlePDF–2.6M
    5.
    Mediator recruits the cohesin loader Scc2 to RNA Pol II-transcribed genes and promotes sister chromatid cohesion
    Mark Mattingly, Chris Seidel, Sofía Muñoz, Yan Hao, Ying Zhang, Zhihui Wen, Laurence Florens, Frank Uhlmann, Jennifer L. Gerton
    Curr Biol. 2022 Jul 11; 32(13): 2884–2896.e6. doi: 10.1016/j.cub.2022.05.019
    PMCID:
    PMC9286023
    AbstractArticle
    6.
    New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources
    Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry
    Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224
    PMCID:
    PMC9209811
    AbstractArticlePDF–818K
    7.
    Comprehensive Synthetic Genetic Array Analysis of Alleles That Interact with Mutation of the Saccharomyces cerevisiae RecQ Helicases Hrq1 and Sgs1
    Elsbeth Sanders, Phoebe A. Nguyen, Cody M. Rogers, Matthew L. Bochman
    G3 (Bethesda) 2020 Dec; 10(12): 4359–4368. Published online 2020 Oct 28. doi: 10.1534/g3.120.401709
    PMCID:
    PMC7718751
    AbstractArticlePDF–1.2M
    8.
    A balance of deubiquitinating enzymes controls cell cycle entry
    Claudine E. Mapa, Heather E. Arsenault, Michelle M. Conti, Kristin E. Poti, Jennifer A. Benanti
    Mol Biol Cell. 2018 Nov 15; 29(23): 2821–2834. doi: 10.1091/mbc.E18-07-0425
    PMCID:
    PMC6249862
    AbstractArticlePDF–3.9M
    9.
    Cdc48 regulates a deubiquitylase cascade critical for mitochondrial fusion
    Tânia Simões, Ramona Schuster, Fabian den Brave, Mafalda Escobar-Henriques
    eLife. 2018; 7: e30015. Published online 2018 Jan 8. doi: 10.7554/eLife.30015
    PMCID:
    PMC5798933
    AbstractArticlePDF–9.3M
    10.
    Genome-Wide Mapping of Decay Factor–mRNA Interactions in Yeast Identifies Nutrient-Responsive Transcripts as Targets of the Deadenylase Ccr4
    Jason E. Miller, Liye Zhang, Haoyang Jiang, Yunfei Li, B. Franklin Pugh, Joseph C. Reese
    G3 (Bethesda) 2018 Jan; 8(1): 315–330. Published online 2017 Nov 20. doi: 10.1534/g3.117.300415
    PMCID:
    PMC5765359
    AbstractArticlePDF–2.2M
    11.
    A global interaction network maps a wiring diagram of cellular function
    Michael Costanzo, Benjamin VanderSluis, Elizabeth N. Koch, Anastasia Baryshnikova, Carles Pons, Guihong Tan, Wen Wang, Matej Usaj, Julia Hanchard, Susan D. Lee, Vicent Pelechano, Erin B. Styles, Maximilian Billmann, Jolanda van Leeuwen, Nydia van Dyk, Zhen-Yuan Lin, Elena Kuzmin, Justin Nelson, Jeff S. Piotrowski, Tharan Srikumar, Sondra Bahr, Yiqun Chen, Raamesh Deshpande, Christoph F. Kurat, Sheena C. Li, Zhijian Li, Mojca Mattiazzi Usaj, Hiroki Okada, Natasha Pascoe, Bryan-Joseph San Luis, Sara Sharifpoor, Emira Shuteriqi, Scott W. Simpkins, Jamie Snider, Harsha Garadi Suresh, Yizhao Tan, Hongwei Zhu, Noel Malod-Dognin, Vuk Janjic, Natasa Przulj, Olga G. Troyanskaya, Igor Stagljar, Tian Xia, Yoshikazu Ohya, Anne-Claude Gingras, Brian Raught, Michael Boutros, Lars M. Steinmetz, Claire L. Moore, Adam P. Rosebrock, Amy A. Caudy, Chad L. Myers, Brenda Andrews, Charles Boone
    Science. Author manuscript; available in PMC 2017 Oct 30.
    Published in final edited form as: Science. 2016 Sep 23; 353(6306): aaf1420. doi: 10.1126/science.aaf1420
    PMCID:
    PMC5661885
    AbstractArticlePDF–2.6M
    12.
    Architecture and dynamics of overlapped RNA regulatory networks
    Christopher P. Lapointe, Melanie A. Preston, Daniel Wilinski, Harriet A.J. Saunders, Zachary T. Campbell, Marvin Wickens
    RNA. 2017 Nov; 23(11): 1636–1647. doi: 10.1261/rna.062687.117
    PMCID:
    PMC5648032
    AbstractArticlePDF–6.6M
    13.
    The Genetic Landscape of a Cell
    Michael Costanzo, Anastasia Baryshnikova, Jeremy Bellay, Yungil Kim, Eric D. Spear, Carolyn S. Sevier, Huiming Ding, Judice L.Y. Koh, Kiana Toufighi, Sara Mostafavi, Jeany Prinz, Robert P. St. Onge, Benjamin VanderSluis, Taras Makhnevych, Franco J. Vizeacoumar, Solmaz Alizadeh, Sondra Bahr, Renee L. Brost, Yiqun Chen, Murat Cokol, Raamesh Deshpande, Zhijian Li, Zhen-Yuan Lin, Wendy Liang, Michaela Marback, Jadine Paw, Bryan-Joseph San Luis, Ermira Shuteriqi, Amy Hin Yan Tong, Nydia van Dyk, Iain M. Wallace, Joseph A. Whitney, Matthew T. Weirauch, Guoqing Zhong, Hongwei Zhu, Walid A. Houry, Michael Brudno, Sasan Ragibizadeh, Balázs Papp, Csaba Pál, Frederick P. Roth, Guri Giaever, Corey Nislow, Olga G. Troyanskaya, Howard Bussey, Gary D. Bader, Anne-Claude Gingras, Quaid D. Morris, Philip M. Kim, Chris A. Kaiser, Chad L. Myers, Brenda J. Andrews, Charles Boone
    Science. Author manuscript; available in PMC 2017 Sep 15.
    Published in final edited form as: Science. 2010 Jan 22; 327(5964): 425–431. doi: 10.1126/science.1180823
    PMCID:
    PMC5600254
    AbstractArticlePDF–2.4M
    14.
    Interrogation of γ-tubulin alleles using high-resolution fitness measurements reveals a distinct cytoplasmic function in spindle alignment
    Kristian Shulist, Eric Yen, Susanne Kaitna, Allen Leary, Alexandra Decterov, Debarun Gupta, Jackie Vogel
    Sci Rep. 2017; 7: 11398. Published online 2017 Sep 12. doi: 10.1038/s41598-017-11789-7
    Correction in:
    Sci Rep. 2018; 8: 2513.
    PMCID:
    PMC5595808
    AbstractArticlePDF–5.9M
    15.
    A Functional Link Between Bir1 and the Saccharomyces cerevisiae Ctf19 Kinetochore Complex Revealed Through Quantitative Fitness Analysis
    Vasso Makrantoni, Adam Ciesiolka, Conor Lawless, Josefin Fernius, Adele Marston, David Lydall, Michael J. R. Stark
    G3 (Bethesda) 2017 Sep; 7(9): 3203–3215. Published online 2017 Jul 28. doi: 10.1534/g3.117.300089
    PMCID:
    PMC5592945
    AbstractArticlePDF–1.7M
    16.
    The yeast protein kinase Sch9 adjusts V-ATPase assembly/disassembly to control pH homeostasis and longevity in response to glucose availability
    Tobias Wilms, Erwin Swinnen, Elja Eskes, Laura Dolz-Edo, Alice Uwineza, Ruben Van Essche, Joëlle Rosseels, Piotr Zabrocki, Elisabetta Cameroni, Vanessa Franssens, Claudio De Virgilio, Gertien J. Smits, Joris Winderickx
    PLoS Genet. 2017 Jun; 13(6): e1006835. Published online 2017 Jun 12. doi: 10.1371/journal.pgen.1006835
    PMCID:
    PMC5484544
    AbstractArticlePDF–14M
    17.
    A network of conserved synthetic lethal interactions for exploration of precision cancer therapy
    Rohith Srivas, John Paul Shen, Chih Cheng Yang, Su Ming Sun, Jianfeng Li, Andrew M. Gross, James Jensen, Katherine Licon, Ana Bojorquez-Gomez, Kristin Klepper, Justin Huang, Daniel Pekin, Jia L. Xu, Huwate Yeerna, Vignesh Sivaganesh, Leonie Kollenstart, Haico van Attikum, Pedro Aza-Blanc, Robert W. Sobol, Trey Ideker
    Mol Cell. Author manuscript; available in PMC 2017 Aug 4.
    Published in final edited form as: Mol Cell. 2016 Aug 4; 63(3): 514–525. Published online 2016 Jul 21. doi: 10.1016/j.molcel.2016.06.022
    PMCID:
    PMC5209245
    AbstractArticlePDF–1.6M
    18.
    Dosage Mutator Genes in Saccharomyces cerevisiae: A Novel Mutator Mode-of-Action of the Mph1 DNA Helicase
    J. Sidney Ang, Supipi Duffy, Romulo Segovia, Peter C. Stirling, Philip Hieter
    Genetics. 2016 Nov; 204(3): 975–986. Published online 2016 Aug 31. doi: 10.1534/genetics.116.192211
    PMCID:
    PMC5105872
    AbstractArticlePDF–2.2M
    19.
    Combined Action of Histone Reader Modules Regulates NuA4 Local Acetyltransferase Function but Not Its Recruitment on the Genome
    Anne-Lise Steunou, Myriam Cramet, Dorine Rossetto, Maria J. Aristizabal, Nicolas Lacoste, Simon Drouin, Valérie Côté, Eric Paquet, Rhea T. Utley, Nevan Krogan, François Robert, Michael S. Kobor, Jacques Côté
    Mol Cell Biol. 2016 Nov 15; 36(22): 2768–2781. Prepublished online 2016 Aug 22. Published online 2016 Oct 28. doi: 10.1128/MCB.00112-16
    PMCID:
    PMC5086519
    AbstractArticlePDF–2.3M
    20.
    The Catalytic Activity of the Ubp3 Deubiquitinating Protease Is Required for Efficient Stress Granule Assembly in Saccharomyces cerevisiae
    Regina Nostramo, Sapna N. Varia, Bo Zhang, Megan M. Emerson, Paul K. Herman
    Mol Cell Biol. 2016 Jan 1; 36(1): 173–183. Prepublished online 2015 Oct 26. Published online 2015 Dec 18. doi: 10.1128/MCB.00609-15
    PMCID:
    PMC4702605
    AbstractArticlePDF–2.3M

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