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Items: 17

1.
New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources
Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry
Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224
PMCID:
PMC9209811
AbstractArticlePDF–818K
2.
Structural basis of Ty3 retrotransposon integration at RNA Polymerase III-transcribed genes
Guillermo Abascal-Palacios, Laura Jochem, Carlos Pla-Prats, Fabienne Beuron, Alessandro Vannini
Nat Commun. 2021; 12: 6992. Published online 2021 Nov 30. doi: 10.1038/s41467-021-27338-w
PMCID:
PMC8632968
AbstractArticlePDF–3.4M
3.
RNA-binding and prion domains: the Yin and Yang of phase separation
Nieves Lorenzo Gotor, Alexandros Armaos, Giulia Calloni, Marc Torrent Burgas, R Martin Vabulas, Natalia Sanchez De Groot, Gian Gaetano Tartaglia
Nucleic Acids Res. 2020 Sep 25; 48(17): 9491–9504. Published online 2020 Aug 28. doi: 10.1093/nar/gkaa681
PMCID:
PMC7515694
AbstractArticlePDF–3.1M
4.
The cellular economy of the Saccharomyces cerevisiae zinc proteome
Yirong Wang, Erin Weisenhorn, Colin MacDiarmid, Claudia Andreini, Michael Bucci, Janet Taggart, Lucia Banci, Jason Russell, Joshua J. Coon, David J. Eide
Metallomics. Author manuscript; available in PMC 2019 Dec 12.
Published in final edited form as: Metallomics. 2018 Dec 12; 10(12): 1755–1776. doi: 10.1039/c8mt00269j
PMCID:
PMC6291366
AbstractArticlePDF–3.0M
5.
Co-translational Localization of an LTR-Retrotransposon RNA to the Endoplasmic Reticulum Nucleates Virus-Like Particle Assembly Sites
Jung H. Doh, Sheila Lutz, M. Joan Curcio
PLoS Genet. 2014 Mar; 10(3): e1004219. Published online 2014 Mar 6. doi: 10.1371/journal.pgen.1004219
PMCID:
PMC3945221
AbstractArticlePDF–11M
6.
Ty1 Gag enhances the stability and nuclear export of Ty1 mRNA
Mary Ann Checkley, Jessica A. Mitchell, Linda D. Eizenstat, Stephen J. Lockett, David J. Garfinkel
Traffic. Author manuscript; available in PMC 2014 Jan 1.
Published in final edited form as: Traffic. 2013 Jan; 14(1): 57–69. Published online 2012 Oct 17. doi: 10.1111/tra.12013
PMCID:
PMC3548082
AbstractArticlePDF–2.4M
7.
Evolutionary Genomics of Transposable Elements in Saccharomyces cerevisiae
Martin Carr, Douda Bensasson, Casey M. Bergman
PLoS One. 2012; 7(11): e50978. Published online 2012 Nov 30. doi: 10.1371/journal.pone.0050978
PMCID:
PMC3511429
AbstractArticlePDF–917K
8.
Two-hybrid analysis of Ty3 capsid subdomain interactions
Min Zhang, Liza SZ Larsen, Becky Irwin, Virginia Bilanchone, Suzanne Sandmeyer
Mob DNA. 2010; 1: 14. Published online 2010 May 5. doi: 10.1186/1759-8753-1-14
PMCID:
PMC2878294
AbstractArticlePDF–713K
9.
Purification of Nuclear Poly(A)-binding Protein Nab2 Reveals Association with the Yeast Transcriptome and a Messenger Ribonucleoprotein Core Structure
Julien Batisse, Claire Batisse, Aidan Budd, Bettina Böttcher, Ed Hurt
J Biol Chem. 2009 Dec 11; 284(50): 34911–34917. Published online 2009 Oct 19. doi: 10.1074/jbc.M109.062034
PMCID:
PMC2787353
AbstractArticlePDF–3.8M
10.
Ty3 Nuclear Entry Is Initiated by Viruslike Particle Docking on GLFG Nucleoporins
Nadejda Beliakova-Bethell, Laura J. Terry, Virginia Bilanchone, Rhonda DaSilva, Kunio Nagashima, Susan R. Wente, Suzanne Sandmeyer
J Virol. 2009 Nov; 83(22): 11914–11925. Published online 2009 Sep 16. doi: 10.1128/JVI.01192-09
PMCID:
PMC2772691
AbstractArticlePDF–2.3M
11.
Investigation by Atomic Force Microscopy of the Structure of Ty3 Retrotransposon Particles
Yurii G. Kuznetsov, Min Zhang, Thomas M. Menees, Alexander McPherson, Suzanne Sandmeyer
J Virol. 2005 Jul; 79(13): 8032–8045. doi: 10.1128/JVI.79.13.8032-8045.2005
PMCID:
PMC1143757
AbstractArticlePDF–1.0M
12.
Functional roles of carboxylate residues comprising the DNA polymerase active site triad of Ty3 reverse transcriptase
Arkadiusz Bibillo, Daniela Lener, George J. Klarmann, Stuart F. J. Le Grice
Nucleic Acids Res. 2005; 33(1): 171–181. Published online 2005 Jan 12. doi: 10.1093/nar/gki150
PMCID:
PMC546138
AbstractArticlePDF–1.4M
13.
Proteolytic processing of Ty3 proteins is required for transposition.
J Kirchner, S Sandmeyer
J Virol. 1993 Jan; 67(1): 19–28. doi: 10.1128/jvi.67.1.19-28.1993
PMCID:
PMC237333
SummaryPage BrowsePDF–2.6M
14.
Ty3 Integrase Is Required for Initiation of Reverse Transcription
M. Henrietta Nymark-McMahon, Nadejda S. Beliakova-Bethell, Jean-Luc Darlix, Stuart F. J. Le Grice, Suzanne B. Sandmeyer
J Virol. 2002 Mar; 76(6): 2804–2816. doi: 10.1128/JVI.76.6.2804-2816.2002
PMCID:
PMC135951
AbstractArticlePDF–1.5M
15.
Invading the Yeast Nucleus: a Nuclear Localization Signal at the C Terminus of Ty1 Integrase Is Required for Transposition In Vivo
Margaret A. Kenna, Carrie Baker Brachmann, Scott E. Devine, Jef D. Boeke
Mol Cell Biol. 1998 Feb; 18(2): 1115–1124. doi: 10.1128/mcb.18.2.1115
PMCID:
PMC108824
AbstractArticlePDF–1.4M
16.
A Truncation Mutant of the 95-Kilodalton Subunit of Transcription Factor IIIC Reveals Asymmetry in Ty3 Integration
Michael Aye, Sandra L. Dildine, Jonathan A. Claypool, Sabine Jourdain, Suzanne B. Sandmeyer
Mol Cell Biol. 2001 Nov; 21(22): 7839–7851. doi: 10.1128/MCB.21.22.7839-7851.2001
PMCID:
PMC99953
AbstractArticlePDF–407K
17.
Integrase Mediates Nuclear Localization of Ty3
Sophia S. Lin, M. Henrietta Nymark-McMahon, Lynn Yieh, Suzanne B. Sandmeyer
Mol Cell Biol. 2001 Nov; 21(22): 7826–7838. doi: 10.1128/MCB.21.22.7826-7838.2001
PMCID:
PMC99952
AbstractArticlePDF–1.7M

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