PMC Links for GEO Profiles (Select 11782894) - PMC

Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry

Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224

PMCID:: PMC9209811

Abstract Article PDF–818K

Select item 70327324.

Skp, Cullin, F-box (SCF)-Met30 and SCF-Cdc4-Mediated Proteolysis of CENP-A Prevents Mislocalization of CENP-A for Chromosomal Stability in Budding Yeast

Wei-Chun Au, Tianyi Zhang, Prashant K. Mishra, Jessica R. Eisenstatt, Robert L. Walker, Josefina Ocampo, Anthony Dawson, Jack Warren, Michael Costanzo, Anastasia Baryshnikova, Karin Flick, David J. Clark, Paul S. Meltzer, Richard E. Baker, Chad Myers, Charles Boone, Peter Kaiser, Munira A. Basrai

PLoS Genet. 2020 Feb; 16(2): e1008597. Published online 2020 Feb 7. doi: 10.1371/journal.pgen.1008597

PMCID:: PMC7032732

Abstract Article PDF–3.9M

Select item 62913665.

The cellular economy of the Saccharomyces cerevisiae zinc proteome

Yirong Wang, Erin Weisenhorn, Colin MacDiarmid, Claudia Andreini, Michael Bucci, Janet Taggart, Lucia Banci, Jason Russell, Joshua J. Coon, David J. Eide

Metallomics. Author manuscript; available in PMC 2019 Dec 12.

Published in final edited form as: Metallomics. 2018 Dec 12; 10(12): 1755–1776. doi: 10.1039/c8mt00269j

PMCID:: PMC6291366

Abstract Article PDF–3.0M

Select item 62162776.

A role for Mog1 in H2Bub1 and H3K4me3 regulation affecting RNAPII transcription and mRNA export

Paula Oliete‐Calvo, Joan Serrano‐Quílez, Carme Nuño‐Cabanes, María E Pérez‐Martínez, Luis M Soares, Bernhard Dichtl, Stephen Buratowski, José E Pérez‐Ortín, Susana Rodríguez‐Navarro

EMBO Rep. 2018 Nov; 19(11): e45992. Published online 2018 Sep 24. doi: 10.15252/embr.201845992

PMCID:: PMC6216277

Abstract Article PDF–1.7M

Select item 56618857.

A global interaction network maps a wiring diagram of cellular function

Michael Costanzo, Benjamin VanderSluis, Elizabeth N. Koch, Anastasia Baryshnikova, Carles Pons, Guihong Tan, Wen Wang, Matej Usaj, Julia Hanchard, Susan D. Lee, Vicent Pelechano, Erin B. Styles, Maximilian Billmann, Jolanda van Leeuwen, Nydia van Dyk, Zhen-Yuan Lin, Elena Kuzmin, Justin Nelson, Jeff S. Piotrowski, Tharan Srikumar, Sondra Bahr, Yiqun Chen, Raamesh Deshpande, Christoph F. Kurat, Sheena C. Li, Zhijian Li, Mojca Mattiazzi Usaj, Hiroki Okada, Natasha Pascoe, Bryan-Joseph San Luis, Sara Sharifpoor, Emira Shuteriqi, Scott W. Simpkins, Jamie Snider, Harsha Garadi Suresh, Yizhao Tan, Hongwei Zhu, Noel Malod-Dognin, Vuk Janjic, Natasa Przulj, Olga G. Troyanskaya, Igor Stagljar, Tian Xia, Yoshikazu Ohya, Anne-Claude Gingras, Brian Raught, Michael Boutros, Lars M. Steinmetz, Claire L. Moore, Adam P. Rosebrock, Amy A. Caudy, Chad L. Myers, Brenda Andrews, Charles Boone

Science. Author manuscript; available in PMC 2017 Oct 30.

Published in final edited form as: Science. 2016 Sep 23; 353(6306): aaf1420. doi: 10.1126/science.aaf1420

PMCID:: PMC5661885

Abstract Article PDF–2.6M

Select item 56002548.

The Genetic Landscape of a Cell

Michael Costanzo, Anastasia Baryshnikova, Jeremy Bellay, Yungil Kim, Eric D. Spear, Carolyn S. Sevier, Huiming Ding, Judice L.Y. Koh, Kiana Toufighi, Sara Mostafavi, Jeany Prinz, Robert P. St. Onge, Benjamin VanderSluis, Taras Makhnevych, Franco J. Vizeacoumar, Solmaz Alizadeh, Sondra Bahr, Renee L. Brost, Yiqun Chen, Murat Cokol, Raamesh Deshpande, Zhijian Li, Zhen-Yuan Lin, Wendy Liang, Michaela Marback, Jadine Paw, Bryan-Joseph San Luis, Ermira Shuteriqi, Amy Hin Yan Tong, Nydia van Dyk, Iain M. Wallace, Joseph A. Whitney, Matthew T. Weirauch, Guoqing Zhong, Hongwei Zhu, Walid A. Houry, Michael Brudno, Sasan Ragibizadeh, Balázs Papp, Csaba Pál, Frederick P. Roth, Guri Giaever, Corey Nislow, Olga G. Troyanskaya, Howard Bussey, Gary D. Bader, Anne-Claude Gingras, Quaid D. Morris, Philip M. Kim, Chris A. Kaiser, Chad L. Myers, Brenda J. Andrews, Charles Boone

Science. Author manuscript; available in PMC 2017 Sep 15.

Published in final edited form as: Science. 2010 Jan 22; 327(5964): 425–431. doi: 10.1126/science.1180823

PMCID:: PMC5600254

Abstract Article PDF–2.4M

Select item 52092459.

A network of conserved synthetic lethal interactions for exploration of precision cancer therapy

Rohith Srivas, John Paul Shen, Chih Cheng Yang, Su Ming Sun, Jianfeng Li, Andrew M. Gross, James Jensen, Katherine Licon, Ana Bojorquez-Gomez, Kristin Klepper, Justin Huang, Daniel Pekin, Jia L. Xu, Huwate Yeerna, Vignesh Sivaganesh, Leonie Kollenstart, Haico van Attikum, Pedro Aza-Blanc, Robert W. Sobol, Trey Ideker

Mol Cell. Author manuscript; available in PMC 2017 Aug 4.

Published in final edited form as: Mol Cell. 2016 Aug 4; 63(3): 514–525. Published online 2016 Jul 21. doi: 10.1016/j.molcel.2016.06.022

PMCID:: PMC5209245

Abstract Article PDF–1.6M

Select item 467555810.

Skp1 Independent Function of Cdc53/Cul1 in F-box Protein Homeostasis

Radhika Mathur, James L. Yen, Peter Kaiser

PLoS Genet. 2015 Dec; 11(12): e1005727. Published online 2015 Dec 10. doi: 10.1371/journal.pgen.1005727

PMCID:: PMC4675558

Abstract Article PDF–4.3M

Select item 376403611.

Genome-Wide Study of the Adaptation of Saccharomyces cerevisiae to the Early Stages of Wine Fermentation

Maite Novo, Ana Mangado, Manuel Quirós, Pilar Morales, Zoel Salvadó, Ramon Gonzalez

PLoS One. 2013; 8(9): e74086. Published online 2013 Sep 5. doi: 10.1371/journal.pone.0074086

PMCID:: PMC3764036

Abstract Article PDF–496K

Select item 373773012.

Non-DNA-binding cofactors enhance DNA-binding specificity of a transcriptional regulatory complex

Trevor Siggers, Michael H Duyzend, Jessica Reddy, Sidra Khan, Martha L Bulyk

Mol Syst Biol. 2011; 7: 555. Published online 2011 Dec 6. doi: 10.1038/msb.2011.89

PMCID:: PMC3737730

Abstract Article PDF–1.0M

Select item 347860113.

Massively parallel measurements of molecular interaction kinetics on a microfluidic platform

Marcel Geertz, David Shore, Sebastian J. Maerkl

Proc Natl Acad Sci U S A. 2012 Oct 9; 109(41): 16540-16545. Published online 2012 Sep 24. doi: 10.1073/pnas.1206011109

PMCID:: PMC3478601

Abstract Article PDF–3.4M

Select item 346412014.

Functional Analysis With a Barcoder Yeast Gene Overexpression System

Alison C. Douglas, Andrew M. Smith, Sara Sharifpoor, Zhun Yan, Tanja Durbic, Lawrence E. Heisler, Anna Y. Lee, Owen Ryan, Hendrikje Göttert, Anu Surendra, Dewald van Dyk, Guri Giaever, Charles Boone, Corey Nislow, Brenda J. Andrews

G3 (Bethesda) 2012 Oct; 2(10): 1279–1289. Published online 2012 Oct 1. doi: 10.1534/g3.112.003400

PMCID:: PMC3464120

Abstract Article PDF–2.5M

Select item 340842515.

Perturbation-based analysis and modeling of combinatorial regulation in the yeast sulfur assimilation pathway

R. Scott McIsaac, Allegra A. Petti, Harmen J. Bussemaker, David Botstein

Mol Biol Cell. 2012 Aug 1; 23(15): 2993–3007. doi: 10.1091/mbc.E12-03-0232

Correction in:: Mol Biol Cell. 2012 Oct 1; 23(19): 3923.

PMCID:: PMC3408425

Abstract Article PDF–4.6M

Select item 335055616.

Characterizing the roles of Met31 and Met32 in coordinating Met4-activated transcription in the absence of Met30

Emilio Carrillo, Giora Ben-Ari, Jan Wildenhain, Mike Tyers, Dilon Grammentz, Traci A. Lee

Mol Biol Cell. 2012 May 15; 23(10): 1928–1942. doi: 10.1091/mbc.E11-06-0532

PMCID:: PMC3350556

Abstract Article PDF–7.5M

Select item 318494717.

Regulation of Septin Dynamics by the Saccharomyces cerevisiae Lysine Acetyltransferase NuA4

Leslie Mitchell, Andrea Lau, Jean-Philippe Lambert, Hu Zhou, Ying Fong, Jean-François Couture, Daniel Figeys, Kristin Baetz

PLoS One. 2011; 6(10): e25336. Published online 2011 Oct 3. doi: 10.1371/journal.pone.0025336

PMCID:: PMC3184947

Abstract Article PDF–3.8M

Select item 302628918.

A transcriptional activator is part of an SCF ubiquitin ligase to control degradation of its co-factors

Ikram Ouni, Karin Flick, Peter Kaiser

Mol Cell. Author manuscript; available in PMC 2011 Dec 22.

Published in final edited form as: Mol Cell. 2010 Dec 22; 40(6): 954–964. doi: 10.1016/j.molcel.2010.11.018

PMCID:: PMC3026289

Abstract Article PDF–2.8M

Select item 300618719.

Rewiring of Genetic Networks in Response to DNA Damage

Sourav Bandyopadhyay, Monika Mehta, Dwight Kuo, Min-Kyung Sung, Ryan Chuang, Eric J. Jaehnig, Bernd Bodenmiller, Katherine Licon, Wilbert Copeland, Michael Shales, Dorothea Fiedler, Janusz Dutkowski, Aude Guénolé, Haico van Attikum, Kevan M. Shokat, Richard D. Kolodner, Won-Ki Huh, Ruedi Aebersold, Michael-Christopher Keogh, Nevan J. Krogan, Trey Ideker

Science. Author manuscript; available in PMC 2010 Dec 21.

Published in final edited form as: Science. 2010 Dec 3; 330(6009): 1385–1389. doi: 10.1126/science.1195618

Correction in:: volume 331 on page 284

PMCID:: PMC3006187

Abstract Article PDF–1.9M

Select item 299064020.

Epistatic relationships reveal the functional organization of yeast transcription factors

Jiashun Zheng, Joris J Benschop, Michael Shales, Patrick Kemmeren, Jack Greenblatt, Gerard Cagney, Frank Holstege, Hao Li, Nevan J Krogan

Mol Syst Biol. 2010; 6: 420. Published online 2010 Oct 19. doi: 10.1038/msb.2010.77

PMCID:: PMC2990640

Abstract Article PDF–3.5M

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