PMC Links for GEO Profiles (Select 123019961) - PMC

Select item 91742451.

HOXD8 hypermethylation as a fully sensitive and specific biomarker for biliary tract cancer detectable in tissue and bile samples

Eleonora Loi, Cesare Zavattari, Alessandro Tommasi, Loredana Moi, Matteo Canale, Agnese Po, Claudia Sabato, Ana Florencia Vega-Benedetti, Pina Ziranu, Marco Puzzoni, Eleonora Lai, Luca Faloppi, María Rullán, Juan Carrascosa, Irene Amat, Jesús M. Urman, Maria Arechederra, Carmen Berasain, Elisabetta Ferretti, Andrea Casadei-Gardini, Matías A. Avila, Sergio Alonso, Mario Scartozzi, Patrizia Zavattari

Br J Cancer. 2022 Jun 1; 126(12): 1783–1794. Published online 2022 Feb 17. doi: 10.1038/s41416-022-01738-1

PMCID:: PMC9174245

Abstract Article PDF–2.1M

Select item 80090482.

Impact of cytosine methylation on DNA binding specificities of human transcription factors

Yimeng Yin, Ekaterina Morgunova, Arttu Jolma, Eevi Kaasinen, Biswajyoti Sahu, Syed Khund-Sayeed, Pratyush K. Das, Teemu Kivioja, Kashyap Dave, Fan Zhong, Kazuhiro R. Nitta, Minna Taipale, Alexander Popov, Paul A. Ginno, Silvia Domcke, Jian Yan, Dirk Schübeler, Charles Vinson, Jussi Taipale

Science. Author manuscript; available in PMC 2021 Mar 30.

Published in final edited form as: Science. 2017 May 5; 356(6337): eaaj2239. doi: 10.1126/science.aaj2239

PMCID:: PMC8009048

Abstract Article PDF–2.6M

Select item 77335943.

LINC01106 post-transcriptionally regulates ELK3 and HOXD8 to promote bladder cancer progression

Liwei Meng, Zhaoquan Xing, Zhaoxin Guo, Zhaoxu Liu

Cell Death Dis. 2020 Dec; 11(12): 1063. Published online 2020 Dec 12. doi: 10.1038/s41419-020-03236-9

PMCID:: PMC7733594

Abstract Article PDF–3.8M

Select item 71699834.

A reference map of the human binary protein interactome

Katja Luck, Dae-Kyum Kim, Luke Lambourne, Kerstin Spirohn, Bridget E. Begg, Wenting Bian, Ruth Brignall, Tiziana Cafarelli, Francisco J. Campos-Laborie, Benoit Charloteaux, Dongsic Choi, Atina G. Coté, Meaghan Daley, Steven Deimling, Alice Desbuleux, Amélie Dricot, Marinella Gebbia, Madeleine F. Hardy, Nishka Kishore, Jennifer J. Knapp, István A. Kovács, Irma Lemmens, Miles W. Mee, Joseph C. Mellor, Carl Pollis, Carles Pons, Aaron D. Richardson, Sadie Schlabach, Bridget Teeking, Anupama Yadav, Mariana Babor, Dawit Balcha, Omer Basha, Christian Bowman-Colin, Suet-Feung Chin, Soon Gang Choi, Claudia Colabella, Georges Coppin, Cassandra D’Amata, David De Ridder, Steffi De Rouck, Miquel Duran-Frigola, Hanane Ennajdaoui, Florian Goebels, Liana Goehring, Anjali Gopal, Ghazal Haddad, Elodie Hatchi, Mohamed Helmy, Yves Jacob, Yoseph Kassa, Serena Landini, Roujia Li, Natascha van Lieshout, Andrew MacWilliams, Dylan Markey, Joseph N. Paulson, Sudharshan Rangarajan, John Rasla, Ashyad Rayhan, Thomas Rolland, Adriana San-Miguel, Yun Shen, Dayag Sheykhkarimli, Gloria M. Sheynkman, Eyal Simonovsky, Murat Taşan, Alexander Tejeda, Vincent Tropepe, Jean-Claude Twizere, Yang Wang, Robert J. Weatheritt, Jochen Weile, Yu Xia, Xinping Yang, Esti Yeger-Lotem, Quan Zhong, Patrick Aloy, Gary D. Bader, Javier De Las Rivas, Suzanne Gaudet, Tong Hao, Janusz Rak, Jan Tavernier, David E. Hill, Marc Vidal, Frederick P. Roth, Michael A. Calderwood

Nature. Author manuscript; available in PMC 2020 Oct 8.

Published in final edited form as: Nature. 2020 Apr; 580(7803): 402–408. Published online 2020 Apr 8. doi: 10.1038/s41586-020-2188-x

PMCID:: PMC7169983

Abstract Article PDF–5.4M

Select item 63500425.

HOXD8/DIAPH2-AS1 epigenetically regulates PAX3 and impairs HTR-8/SVneo cell function under hypoxia

Yaling Feng, Jianxia Wang, Yue He, Heng Zhang, Minhui Jiang, Dandan Cao, Aiping Wang

Biosci Rep. 2019 Jan 31; 39(1): BSR20182022. Prepublished online 2019 Jan 9. Published online 2019 Jan 25. doi: 10.1042/BSR20182022

PMCID:: PMC6350042

Abstract Article PDF–1.0M

Select item 61288526.

Potential role of the HOXD8 transcription factor in cisplatin resistance and tumour metastasis in advanced epithelial ovarian cancer

PengMing Sun, YiYi Song, DaBin Liu, GuiFen Liu, XiaoDan Mao, BinHua Dong, Elena Ioana Braicu, Jalid Sehouli

Sci Rep. 2018; 8: 13483. Published online 2018 Sep 7. doi: 10.1038/s41598-018-31030-3

PMCID:: PMC6128852

Abstract Article PDF–8.5M

Select item 31780597.

Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium

Pascale Gaudet, Michael S. Livstone, Suzanna E. Lewis, Paul D. Thomas

Brief Bioinform. 2011 Sep; 12(5): 449–462. Published online 2011 Aug 27. doi: 10.1093/bib/bbr042

PMCID:: PMC3178059

Abstract Article PDF–1.0M

Select item 27953478.

Altered Transmission of HOX and Apoptotic SNPs Identify a Potential Common Pathway for Clubfoot

Audrey R. Ester, Katelyn S. Weymouth, Amber Burt, Carol Wise, Allison Scott, Christina A Gurnett, Matthew B. Dobbs, Susan H. Blanton, Jacqueline T. Hecht

Am J Med Genet A. Author manuscript; available in PMC 2010 Dec 1.

Published in final edited form as: Am J Med Genet A. 2009 Dec; 149A(12): 2745–2752. doi: 10.1002/ajmg.a.33130

PMCID:: PMC2795347

Abstract Article PDF–394K

Select item 27915189.

High-Density Association Study of 383 Candidate Genes for Volumetric BMD at the Femoral Neck and Lumbar Spine Among Older Men

Laura M. Yerges, Lambertus Klei, Jane A. Cauley, Kathryn Roeder, Candace M. Kammerer, Susan P. Moffett, Kristine E. Ensrud, Cara S. Nestlerode, Lynn M. Marshall, Andrew R. Hoffman, Cora Lewis, Thomas F. Lang, Elizabeth Barrett-Connor, Robert E. Ferrell, Eric S. Orwoll, Joseph M. Zmuda

J Bone Miner Res. 2009 Dec; 24(12): 2039–2049. Published online 2009 May 18. doi: 10.1359/JBMR.090524

PMCID:: PMC2791518

Abstract Article PDF–759K

Select item 260067010.

Hepatitis C virus infection protein network

B de Chassey, V Navratil, L Tafforeau, M S Hiet, A Aublin-Gex, S Agaugué, G Meiffren, F Pradezynski, B F Faria, T Chantier, M Le Breton, J Pellet, N Davoust, P E Mangeot, A Chaboud, F Penin, Y Jacob, P O Vidalain, M Vidal, P André, C Rabourdin-Combe, V Lotteau

Mol Syst Biol. 2008; 4: 230. Published online 2008 Nov 4. doi: 10.1038/msb.2008.66