PMC Links for GEO Profiles (Select 125863167) - PMC

Select item 100339371.

Assessment of community efforts to advance network-based prediction of protein–protein interactions

Xu-Wen Wang, Lorenzo Madeddu, Kerstin Spirohn, Leonardo Martini, Adriano Fazzone, Luca Becchetti, Thomas P. Wytock, István A. Kovács, Olivér M. Balogh, Bettina Benczik, Mátyás Pétervári, Bence Ágg, Péter Ferdinandy, Loan Vulliard, Jörg Menche, Stefania Colonnese, Manuela Petti, Gaetano Scarano, Francesca Cuomo, Tong Hao, Florent Laval, Luc Willems, Jean-Claude Twizere, Marc Vidal, Michael A. Calderwood, Enrico Petrillo, Albert-László Barabási, Edwin K. Silverman, Joseph Loscalzo, Paola Velardi, Yang-Yu Liu

Nat Commun. 2023; 14: 1582. Published online 2023 Mar 22. doi: 10.1038/s41467-023-37079-7

PMCID:: PMC10033937

Abstract Article PDF–1.5M

Select item 92185102.

Inhibitory and stimulatory micropeptides preferentially bind to different conformations of the cardiac calcium pump

Sean R. Cleary, Xuan Fang, Ellen E. Cho, Marsha P. Pribadi, Jaroslava Seflova, Jordan R. Beach, Peter M. Kekenes-Huskey, Seth L. Robia

J Biol Chem. 2022 Jul; 298(7): 102060. Published online 2022 May 20. doi: 10.1016/j.jbc.2022.102060

PMCID:: PMC9218510

Abstract Article PDF–1.9M

Select item 82032913.

Dwarf open reading frame (DWORF) is a direct activator of the sarcoplasmic reticulum calcium pump SERCA

M'Lynn E Fisher, Elisa Bovo, Rodrigo Aguayo-Ortiz, Ellen E Cho, Marsha P Pribadi, Michael P Dalton, Nishadh Rathod, M Joanne Lemieux, L Michel Espinoza-Fonseca, Seth L Robia, Aleksey V Zima, Howard S Young

eLife. 2021; 10: e65545. Published online 2021 Jun 2. doi: 10.7554/eLife.65545

PMCID:: PMC8203291

Abstract Article PDF–2.3M

Select item 79884934.

The transmembrane peptide DWORF activates SERCA2a via dual mechanisms

Ang Li, Samantha L. Yuen, Daniel R. Stroik, Evan Kleinboehl, Razvan L. Cornea, David D. Thomas

J Biol Chem. 2021 Jan-Jun; 296: 100412. Published online 2021 Feb 11. doi: 10.1016/j.jbc.2021.100412

PMCID:: PMC7988493

Abstract Article PDF–1.4M

Select item 71699835.

A reference map of the human binary protein interactome

Katja Luck, Dae-Kyum Kim, Luke Lambourne, Kerstin Spirohn, Bridget E. Begg, Wenting Bian, Ruth Brignall, Tiziana Cafarelli, Francisco J. Campos-Laborie, Benoit Charloteaux, Dongsic Choi, Atina G. Coté, Meaghan Daley, Steven Deimling, Alice Desbuleux, Amélie Dricot, Marinella Gebbia, Madeleine F. Hardy, Nishka Kishore, Jennifer J. Knapp, István A. Kovács, Irma Lemmens, Miles W. Mee, Joseph C. Mellor, Carl Pollis, Carles Pons, Aaron D. Richardson, Sadie Schlabach, Bridget Teeking, Anupama Yadav, Mariana Babor, Dawit Balcha, Omer Basha, Christian Bowman-Colin, Suet-Feung Chin, Soon Gang Choi, Claudia Colabella, Georges Coppin, Cassandra D’Amata, David De Ridder, Steffi De Rouck, Miquel Duran-Frigola, Hanane Ennajdaoui, Florian Goebels, Liana Goehring, Anjali Gopal, Ghazal Haddad, Elodie Hatchi, Mohamed Helmy, Yves Jacob, Yoseph Kassa, Serena Landini, Roujia Li, Natascha van Lieshout, Andrew MacWilliams, Dylan Markey, Joseph N. Paulson, Sudharshan Rangarajan, John Rasla, Ashyad Rayhan, Thomas Rolland, Adriana San-Miguel, Yun Shen, Dayag Sheykhkarimli, Gloria M. Sheynkman, Eyal Simonovsky, Murat Taşan, Alexander Tejeda, Vincent Tropepe, Jean-Claude Twizere, Yang Wang, Robert J. Weatheritt, Jochen Weile, Yu Xia, Xinping Yang, Esti Yeger-Lotem, Quan Zhong, Patrick Aloy, Gary D. Bader, Javier De Las Rivas, Suzanne Gaudet, Tong Hao, Janusz Rak, Jan Tavernier, David E. Hill, Marc Vidal, Frederick P. Roth, Michael A. Calderwood

Nature. Author manuscript; available in PMC 2020 Oct 8.

Published in final edited form as: Nature. 2020 Apr; 580(7803): 402–408. Published online 2020 Apr 8. doi: 10.1038/s41586-020-2188-x

PMCID:: PMC7169983

Abstract Article PDF–5.4M

Select item 55208516.

LncRNA-encoded peptides: More than translational noise?

Nathalie Rion, Markus A Rüegg

Cell Res. 2017 May; 27(5): 604–605. Published online 2017 Mar 14. doi: 10.1038/cr.2017.35

PMCID:: PMC5520851

Article PDF–1.8M

Select item 55098717.

Early vertebrate origin and diversification of small transmembrane regulators of cellular ion transport

Sergej Pirkmajer, Henriette Kirchner, Leonidas S. Lundell, Pavel V. Zelenin, Juleen R. Zierath, Kira S. Makarova, Yuri I. Wolf, Alexander V. Chibalin

J Physiol. 2017 Jul 15; 595(14): 4611–4630. Published online 2017 May 29. doi: 10.1113/JP274254

PMCID:: PMC5509871

Abstract Article PDF–764K

Select item 49968498.

Hide and Seek: Protein-coding Sequences Inside “Non-coding” RNAs

Daniel Oehler, Jan Haas

Genomics Proteomics Bioinformatics. 2016 Aug; 14(4): 179–180. Published online 2016 Apr 9. doi: 10.1016/j.gpb.2016.03.002

PMCID:: PMC4996849

Article PDF–411K

Select item 48928909.

A peptide encoded by a transcript annotated as long noncoding RNA enhances SERCA activity in muscle

Benjamin R. Nelson, Catherine A. Makarewich, Douglas M. Anderson, Benjamin R. Winders, Constantine D. Troupes, Fenfen Wu, Austin L. Reese, John R. McAnally, Xiongwen Chen, Ege T. Kavalali, Stephen C. Cannon, Steven R. Houser, Rhonda Bassel-Duby, Eric N. Olson

Science. Author manuscript; available in PMC 2016 Jun 3.

Published in final edited form as: Science. 2016 Jan 15; 351(6270): 271–275. doi: 10.1126/science.aad4076

PMCID:: PMC4892890

Abstract Article PDF–435K

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