PMC Links for GEO Profiles (Select 126256964) - PMC

Select item 106146921.

Upregulated FOXM1 stimulates chondrocyte senescence in Acot12^-/-Nudt7^-/- double knockout mice

Jinsoo Song, Ee Hyun Kim, Jun-Ho Yang, Donghyeon Kim, Akhmad Irhas Robby, Se-ah Kim, Sung Young Park, Ji Hyun Ryu, Eun-Jung Jin

Theranostics. 2023; 13(15): 5207–5222. Published online 2023 Sep 25. doi: 10.7150/thno.89033

PMCID:: PMC10614692

Abstract Article PDF–11M

Select item 97928992.

NUDT7 regulates total hepatic CoA levels and the composition of the intestinal bile acid pool in male mice fed a Western diet

Schuyler D. Vickers, Stephanie A. Shumar, Dominique C. Saporito, Amina Kunovac, Quincy A. Hathaway, Breeanna Mintmier, Judy A. King, Rachel D. King, Vazhaikkurichi M. Rajendran, Aniello M. Infante, John M. Hollander, Roberta Leonardi

J Biol Chem. 2023 Jan; 299(1): 102745. Published online 2022 Nov 24. doi: 10.1016/j.jbc.2022.102745

PMCID:: PMC9792899

Abstract Article PDF–4.7M

Select item 90145593.

Functional genomic landscape of cancer-intrinsic evasion of killing by T cells

Keith A. Lawson, Cristovão M. Sousa, Xiaoyu Zhang, Eiru Kim, Rummy Akthar, Joseph J. Caumanns, Yuxi Yao, Nicholas Mikolajewicz, Catherine Ross, Kevin R. Brown, Abdelrahman Abou Zid, Zi Peng Fan, Shirley Hui, Jordan A. Krall, Donald M. Simons, Chloe J. Slater, Victor De Jesus, Lujia Tang, Richa Singh, Joshua E. Goldford, Sarah Martin, Qian Huang, Elizabeth A. Francis, Andrea Habsid, Ryan Climie, David Tieu, Jiarun Wei, Ren Li, Amy Hin Yan Tong, Michael Aregger, Katherine S. Chan, Hong Han, Xiaowei Wang, Patricia Mero, John H. Brumell, Antonio Finelli, Laurie Ailles, Gary Bader, Gromoslaw A. Smolen, Gillian A. Kingsbury, Traver Hart, Charles Kung, Jason Moffat

Nature. Author manuscript; available in PMC 2022 Apr 18.

Published in final edited form as: Nature. 2020 Oct; 586(7827): 120–126. Published online 2020 Sep 23. doi: 10.1038/s41586-020-2746-2

PMCID:: PMC9014559

Abstract Article PDF–6.6M

Select item 64951664.

Overexpression of Nudt7 decreases bile acid levels and peroxisomal fatty acid oxidation in the liver

Stephanie A. Shumar, Evan W. Kerr, Paolo Fagone, Aniello M. Infante, Roberta Leonardi

J Lipid Res. 2019 May; 60(5): 1005–1019. Published online 2019 Mar 7. doi: 10.1194/jlr.M092676

PMCID:: PMC6495166

Abstract Article PDF–1.7M

Select item 61090825.

Dysregulation of the NUDT7-PGAM1 axis is responsible for chondrocyte death during osteoarthritis pathogenesis

Jinsoo Song, In-Jeoung Baek, Churl-Hong Chun, Eun-Jung Jin

Nat Commun. 2018; 9: 3427. Published online 2018 Aug 24. doi: 10.1038/s41467-018-05787-0

PMCID:: PMC6109082

Abstract Article PDF–1.7M

Select item 58579996.

Nudt19 is a renal CoA diphosphohydrolase with biochemical and regulatory properties that are distinct from the hepatic Nudt7 isoform

Stephanie A. Shumar, Evan W. Kerr, Werner J. Geldenhuys, Grace E. Montgomery, Paolo Fagone, Puchong Thirawatananond, Harry Saavedra, Sandra B. Gabelli, Roberta Leonardi

J Biol Chem. 2018 Mar 16; 293(11): 4134–4148. Published online 2018 Jan 29. doi: 10.1074/jbc.RA117.001358

PMCID:: PMC5857999

Abstract Article PDF–3.5M

Select item 35724107.

A conditional knockout resource for the genome–wide study of mouse gene function

William C. Skarnes, Barry Rosen, Anthony P. West, Manousos Koutsourakis, Wendy Bushell, Vivek Iyer, Alejandro O. Mujica, Mark Thomas, Jennifer Harrow, Tony Cox, David Jackson, Jessica Severin, Patrick Biggs, Jun Fu, Michael Nefedov, Pieter J. de Jong, A. Francis Stewart, Allan Bradley

Nature. Author manuscript; available in PMC 2013 Feb 14.

Published in final edited form as: Nature. 2011 Jun 15; 474(7351): 337–342. Published online 2011 Jun 15. doi: 10.1038/nature10163

PMCID:: PMC3572410

Abstract Article PDF–1.1M

Select item 31780598.

Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium

Pascale Gaudet, Michael S. Livstone, Suzanna E. Lewis, Paul D. Thomas

Brief Bioinform. 2011 Sep; 12(5): 449–462. Published online 2011 Aug 27. doi: 10.1093/bib/bbr042

PMCID:: PMC3178059

Abstract Article PDF–1.0M

Select item 29822159.

Multiple mRNA Decapping Enzymes in Mammalian Cells

Man-Gen Song, You Li, Megerditch Kiledjian

Mol Cell. Author manuscript; available in PMC 2011 Nov 12.

Published in final edited form as: Mol Cell. 2010 Nov 12; 40(3): 423–432. doi: 10.1016/j.molcel.2010.10.010

PMCID:: PMC2982215

Abstract Article PDF–1.0M

Select item 249358610.

Wdnm1-like, a new adipokine with a role in MMP-2 activation

Yu Wu, Cynthia M. Smas

Am J Physiol Endocrinol Metab. 2008 Jul; 295(1): E205–E215. Published online 2008 May 20. doi: 10.1152/ajpendo.90316.2008

PMCID:: PMC2493586

Abstract Article

Select item 122360911.

Mammalian NADH diphosphatases of the Nudix family: cloning and characterization of the human peroxisomal NUDT12 protein.

Salama R Abdelraheim, David G Spiller, Alexander G McLennan

Biochem J. 2003 Sep 1; 374(Pt 2): 329–335. doi: 10.1042/BJ20030441

PMCID:: PMC1223609

Summary PDF–223K

Select item 122192512.

The mouse Nudt7 gene encodes a peroxisomal nudix hydrolase specific for coenzyme A and its derivatives.

L Gasmi, A G McLennan

Biochem J. 2001 Jul 1; 357(Pt 1): 33–38. doi: 10.1042/0264-6021:3570033

PMCID:: PMC1221925

Summary PDF–204K

Select item 52892813.

The Status, Quality, and Expansion of the NIH Full-Length cDNA Project: The Mammalian Gene Collection (MGC)

Genome Res. 2004 Oct; 14(10b): 2121–2127. doi: 10.1101/gr.2596504

Correction in:: Genome Res. 2006 Jun; 16(6): 804.

PMCID:: PMC528928

Abstract Article PDF–140K

Select item 31099214.

RIKEN Integrated Sequence Analysis (RISA) System—384-Format Sequencing Pipeline with 384 Multicapillary Sequencer

Kazuhiro Shibata, Masayoshi Itoh, Katsunori Aizawa, Sumiharu Nagaoka, Nobuya Sasaki, Piero Carninci, Hideaki Konno, Junichi Akiyama, Katsuo Nishi, Tokuji Kitsunai, Hideo Tashiro, Mari Itoh, Noriko Sumi, Yoshiyuki Ishii, Shin Nakamura, Makoto Hazama, Tsutomu Nishine, Akira Harada, Rintaro Yamamoto, Hiroyuki Matsumoto, Sumito Sakaguchi, Takashi Ikegami, Katsuya Kashiwagi, Syuji Fujiwake, Kouji Inoue, Yoshiyuki Togawa, Masaki Izawa, Eiji Ohara, Masanori Watahiki, Yuko Yoneda, Tomokazu Ishikawa, Kaori Ozawa, Takumi Tanaka, Shuji Matsuura, Jun Kawai, Yasushi Okazaki, Masami Muramatsu, Yorinao Inoue, Akira Kira, Yoshihide Hayashizaki

Genome Res. 2000 Nov; 10(11): 1757–1771. doi: 10.1101/gr.152600

PMCID:: PMC310992

Abstract Article PDF–3.4M

Select item 31098015.

Normalization and Subtraction of Cap-Trapper-Selected cDNAs to Prepare Full-Length cDNA Libraries for Rapid Discovery of New Genes

Piero Carninci, Yuko Shibata, Norihito Hayatsu, Yuichi Sugahara, Kazuhiro Shibata, Masayoshi Itoh, Hideaki Konno, Yasushi Okazaki, Masami Muramatsu, Yoshihide Hayashizaki

Genome Res. 2000 Oct; 10(10): 1617–1630. doi: 10.1101/gr.145100

PMCID:: PMC310980

Abstract Article PDF–1.4M

Select item 13924116.

Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences

Mammalian Gene Collection (MGC) Program Team

Proc Natl Acad Sci U S A. 2002 Dec 24; 99(26): 16899–16903. Published online 2002 Dec 11. doi: 10.1073/pnas.242603899

PMCID:: PMC139241

Abstract Article PDF–118K

Select item 1683317.

Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray

Tetsuya S. Tanaka, Saied A. Jaradat, Meng K. Lim, George J. Kargul, Xiaohong Wang, Marija J. Grahovac, Serafino Pantano, Yuri Sano, Yulan Piao, Ramaiah Nagaraja, Hirofumi Doi, William H. Wood, III, Kevin G. Becker, Minoru S. H. Ko

Proc Natl Acad Sci U S A. 2000 Aug 1; 97(16): 9127–9132. doi: 10.1073/pnas.97.16.9127

PMCID:: PMC16833

Abstract Article PDF–847K

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