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Items: 1 to 20 of 40

1.
Protein interaction network revealed by quantitative proteomic analysis links TFIIB to multiple aspects of the transcription cycle
Michael J. O’Brien, Athar Ansari
Biochim Biophys Acta Proteins Proteom. Author manuscript; available in PMC 2024 Feb 16.
Published in final edited form as: Biochim Biophys Acta Proteins Proteom. 2024 Jan 1; 1872(1): 140968. Published online 2023 Oct 19. doi: 10.1016/j.bbapap.2023.140968
PMCID:
PMC10872477
AbstractArticlePDF–1.7M
2.
The social and structural architecture of the yeast protein interactome
André C. Michaelis, Andreas-David Brunner, Maximilian Zwiebel, Florian Meier, Maximilian T. Strauss, Isabell Bludau, Matthias Mann
Nature. 2023; 624(7990): 192–200. Published online 2023 Nov 15. doi: 10.1038/s41586-023-06739-5
PMCID:
PMC10700138
AbstractArticlePDF–20M
3.
Nutrient Signaling, Stress Response, and Inter-organelle Communication Are Non-canonical Determinants of Cell Fate
N. Ezgi Wood, Piya Kositangool, Hanaa Hariri, Ashley J. Marchand, W. Mike Henne
Cell Rep. Author manuscript; available in PMC 2022 Dec 12.
Published in final edited form as: Cell Rep. 2020 Dec 1; 33(9): 108446. doi: 10.1016/j.celrep.2020.108446
PMCID:
PMC9744185
AbstractArticlePDF–3.2M
4.
New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources
Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry
Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224
PMCID:
PMC9209811
AbstractArticlePDF–818K
5.
Comprehensive Synthetic Genetic Array Analysis of Alleles That Interact with Mutation of the Saccharomyces cerevisiae RecQ Helicases Hrq1 and Sgs1
Elsbeth Sanders, Phoebe A. Nguyen, Cody M. Rogers, Matthew L. Bochman
G3 (Bethesda) 2020 Dec; 10(12): 4359–4368. Published online 2020 Oct 28. doi: 10.1534/g3.120.401709
PMCID:
PMC7718751
AbstractArticlePDF–1.2M
6.
Mechanisms through which lithocholic acid delays yeast chronological aging under caloric restriction conditions
Anthony Arlia-Ciommo, Anna Leonov, Karamat Mohammad, Adam Beach, Vincent R. Richard, Simon D. Bourque, Michelle T. Burstein, Alexander A. Goldberg, Pavlo Kyryakov, Alejandra Gomez-Perez, Olivia Koupaki, Vladimir I. Titorenko
Oncotarget. 2018 Oct 9; 9(79): 34945–34971. Published online 2018 Oct 9. doi: 10.18632/oncotarget.26188
PMCID:
PMC6201858
AbstractArticlePDF–9.7M
7.
Lipid droplets alleviate cadmium induced cytotoxicity in Saccharomyces cerevisiae
Selvaraj Rajakumar, Vasanthi Nachiappan
Toxicol Res (Camb) 2017 Jan 1; 6(1): 30–41. Published online 2016 Oct 4. doi: 10.1039/c6tx00187d
PMCID:
PMC6062051
AbstractArticlePDF–8.6M
8.
Caloric restriction delays yeast chronological aging by remodeling carbohydrate and lipid metabolism, altering peroxisomal and mitochondrial functionalities, and postponing the onsets of apoptotic and liponecrotic modes of regulated cell death
Anthony Arlia-Ciommo, Anna Leonov, Adam Beach, Vincent R. Richard, Simon D. Bourque, Michelle T. Burstein, Pavlo Kyryakov, Alejandra Gomez-Perez, Olivia Koupaki, Rachel Feldman, Vladimir I. Titorenko
Oncotarget. 2018 Mar 23; 9(22): 16163–16184. Published online 2018 Mar 5. doi: 10.18632/oncotarget.24604
PMCID:
PMC5882325
AbstractArticlePDF–8.0M
9.
Genome-Wide Mapping of Decay Factor–mRNA Interactions in Yeast Identifies Nutrient-Responsive Transcripts as Targets of the Deadenylase Ccr4
Jason E. Miller, Liye Zhang, Haoyang Jiang, Yunfei Li, B. Franklin Pugh, Joseph C. Reese
G3 (Bethesda) 2018 Jan; 8(1): 315–330. Published online 2017 Nov 20. doi: 10.1534/g3.117.300415
PMCID:
PMC5765359
AbstractArticlePDF–2.2M
10.
A global interaction network maps a wiring diagram of cellular function
Michael Costanzo, Benjamin VanderSluis, Elizabeth N. Koch, Anastasia Baryshnikova, Carles Pons, Guihong Tan, Wen Wang, Matej Usaj, Julia Hanchard, Susan D. Lee, Vicent Pelechano, Erin B. Styles, Maximilian Billmann, Jolanda van Leeuwen, Nydia van Dyk, Zhen-Yuan Lin, Elena Kuzmin, Justin Nelson, Jeff S. Piotrowski, Tharan Srikumar, Sondra Bahr, Yiqun Chen, Raamesh Deshpande, Christoph F. Kurat, Sheena C. Li, Zhijian Li, Mojca Mattiazzi Usaj, Hiroki Okada, Natasha Pascoe, Bryan-Joseph San Luis, Sara Sharifpoor, Emira Shuteriqi, Scott W. Simpkins, Jamie Snider, Harsha Garadi Suresh, Yizhao Tan, Hongwei Zhu, Noel Malod-Dognin, Vuk Janjic, Natasa Przulj, Olga G. Troyanskaya, Igor Stagljar, Tian Xia, Yoshikazu Ohya, Anne-Claude Gingras, Brian Raught, Michael Boutros, Lars M. Steinmetz, Claire L. Moore, Adam P. Rosebrock, Amy A. Caudy, Chad L. Myers, Brenda Andrews, Charles Boone
Science. Author manuscript; available in PMC 2017 Oct 30.
Published in final edited form as: Science. 2016 Sep 23; 353(6306): aaf1420. doi: 10.1126/science.aaf1420
PMCID:
PMC5661885
AbstractArticlePDF–2.6M
11.
The Genetic Landscape of a Cell
Michael Costanzo, Anastasia Baryshnikova, Jeremy Bellay, Yungil Kim, Eric D. Spear, Carolyn S. Sevier, Huiming Ding, Judice L.Y. Koh, Kiana Toufighi, Sara Mostafavi, Jeany Prinz, Robert P. St. Onge, Benjamin VanderSluis, Taras Makhnevych, Franco J. Vizeacoumar, Solmaz Alizadeh, Sondra Bahr, Renee L. Brost, Yiqun Chen, Murat Cokol, Raamesh Deshpande, Zhijian Li, Zhen-Yuan Lin, Wendy Liang, Michaela Marback, Jadine Paw, Bryan-Joseph San Luis, Ermira Shuteriqi, Amy Hin Yan Tong, Nydia van Dyk, Iain M. Wallace, Joseph A. Whitney, Matthew T. Weirauch, Guoqing Zhong, Hongwei Zhu, Walid A. Houry, Michael Brudno, Sasan Ragibizadeh, Balázs Papp, Csaba Pál, Frederick P. Roth, Guri Giaever, Corey Nislow, Olga G. Troyanskaya, Howard Bussey, Gary D. Bader, Anne-Claude Gingras, Quaid D. Morris, Philip M. Kim, Chris A. Kaiser, Chad L. Myers, Brenda J. Andrews, Charles Boone
Science. Author manuscript; available in PMC 2017 Sep 15.
Published in final edited form as: Science. 2010 Jan 22; 327(5964): 425–431. doi: 10.1126/science.1180823
PMCID:
PMC5600254
AbstractArticlePDF–2.4M
12.
Lipid droplets are central organelles for meiosis II progression during yeast sporulation
Tzu-Han Hsu, Rey-Huei Chen, Yun-Hsin Cheng, Chao-Wen Wang
Mol Biol Cell. 2017 Feb 1; 28(3): 440–451. doi: 10.1091/mbc.E16-06-0375
PMCID:
PMC5341727
AbstractArticlePDF–7.1M
13.
Functional characterisation of long intergenic non-coding RNAs through genetic interaction profiling in Saccharomyces cerevisiae
Dimitris Kyriakou, Emmanouil Stavrou, Panayiota Demosthenous, Georgia Angelidou, Bryan-Joseph San Luis, Charles Boone, Vasilis J. Promponas, Antonis Kirmizis
BMC Biol. 2016; 14: 106. Published online 2016 Dec 7. doi: 10.1186/s12915-016-0325-7
PMCID:
PMC5142380
AbstractArticlePDF–1.2M
14.
Regulation of the yeast triacylglycerol lipases Tgl4p and Tgl5p by the presence/absence of nonpolar lipids
Isabella Klein, Lisa Klug, Claudia Schmidt, Martina Zandl, Martina Korber, Günther Daum, Karin Athenstaedt
Mol Biol Cell. 2016 Jul 1; 27(13): 2014–2024. doi: 10.1091/mbc.E15-09-0633
PMCID:
PMC4927276
AbstractArticlePDF–1.1M
15.
Interactomic study on interaction between lipid droplets and mitochondria
Jing Pu, Cheol Woong Ha, Shuyan Zhang, Jong Pil Jung, Won-Ki Huh, Pingsheng Liu
Protein Cell. 2011 Jun; 2(6): 487–496. Published online 2011 Jul 12. doi: 10.1007/s13238-011-1061-y
PMCID:
PMC4875178
AbstractArticlePDF–1.5M
16.
An Energy-Independent Pro-longevity Function of Triacylglycerol in Yeast
Witawas Handee, Xiaobo Li, Kevin W. Hall, Xiexiong Deng, Pan Li, Christoph Benning, Barry L. Williams, Min-Hao Kuo
PLoS Genet. 2016 Feb; 12(2): e1005878. Published online 2016 Feb 23. doi: 10.1371/journal.pgen.1005878
PMCID:
PMC4764362
AbstractArticlePDF–4.0M
17.
A defect of the vacuolar putative lipase Atg15 accelerates degradation of lipid droplets through lipolysis
Yuichiro Maeda, Masahide Oku, Yasuyoshi Sakai
Autophagy. 2015 Aug; 11(8): 1247–1258. Published online 2015 Sep 14. doi: 10.1080/15548627.2015.1056969
PMCID:
PMC4590595
AbstractArticlePDF–894K
18.
Lipid droplets and their component triglycerides and steryl esters regulate autophagosome biogenesis
Tomer Shpilka, Evelyn Welter, Noam Borovsky, Nira Amar, Muriel Mari, Fulvio Reggiori, Zvulun Elazar
EMBO J. 2015 Aug 13; 34(16): 2117–2131. Published online 2015 Jul 14. doi: 10.15252/embj.201490315
PMCID:
PMC4557665
AbstractArticlePDF–2.0M
19.
Lipids containing medium-chain fatty acids are specific to post-whole genome duplication Saccharomycotina yeasts
Marine Froissard, Michel Canonge, Marie Pouteaux, Bernard Cintrat, Sabrina Mohand-Oumoussa, Stéphane E. Guillouet, Thierry Chardot, Noémie Jacques, Serge Casaregola
BMC Evol Biol. 2015; 15: 97. Published online 2015 May 28. doi: 10.1186/s12862-015-0369-2
PMCID:
PMC4446107
AbstractArticlePDF–2.8M
20.
Morphogenesis checkpoint kinase Swe1 is the executor of lipolysis-dependent cell-cycle progression
Neha Chauhan, Myriam Visram, Alvaro Cristobal-Sarramian, Florian Sarkleti, Sepp D. Kohlwein
Proc Natl Acad Sci U S A. 2015 Mar 10; 112(10): E1077–E1085. Published online 2015 Feb 23. doi: 10.1073/pnas.1423175112
PMCID:
PMC4364240
AbstractArticlePDF–1.2M

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