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Items: 1 to 20 of 27

1.
Dynamic 3D Chromatin Architecture Contributes to Enhancer Specificity and Limb Morphogenesis
Bjørt K. Kragesteen, Malte Spielmann, Christina Paliou, Verena Heinrich, Robert Schöpflin, Andrea Esposito, Carlo Annunziatella, Simona Bianco, Andrea M. Chiariello, Ivana Jerković, Izabela Harabula, Philine Guckelberger, Michael Pechstein, Lars Wittler, Wing-Lee Chan, Martin Franke, Darío G. Lupiáñez, Katerina Kraft, Bernd Timmermann, Martin Vingron, Axel Visel, Mario Nicodemi, Stefan Mundlos, Guillaume Andrey
Nat Genet. Author manuscript; available in PMC 2023 May 3.
Published in final edited form as: Nat Genet. 2018 Oct; 50(10): 1463–1473. Published online 2018 Sep 27. doi: 10.1038/s41588-018-0221-x
PMCID:
PMC10154999
AbstractArticlePDF–4.1M
2.
Hox11 expression characterizes developing zeugopod synovial joints and is coupled to postnatal articular cartilage morphogenesis into functional zones in mice
Danielle Rux, Kimberly Helbig, Eiki Koyama, Maurizio Pacifici
Dev Biol. Author manuscript; available in PMC 2022 Sep 1.
Published in final edited form as: Dev Biol. 2021 Sep; 477: 49–63. Published online 2021 May 16. doi: 10.1016/j.ydbio.2021.05.007
PMCID:
PMC8277736
AbstractArticlePDF–6.7M
3.
Lysine demethylase 7a regulates murine anterior-posterior development by modulating the transcription of Hox gene cluster
Yoshiki Higashijima, Nao Nagai, Masamichi Yamamoto, Taro Kitazawa, Yumiko K. Kawamura, Akashi Taguchi, Natsuko Nakada, Masaomi Nangaku, Tetsushi Furukawa, Hiroyuki Aburatani, Hiroki Kurihara, Youichiro Wada, Yasuharu Kanki
Commun Biol. 2020; 3: 725. Published online 2020 Nov 30. doi: 10.1038/s42003-020-01456-5
PMCID:
PMC7704666
AbstractArticlePDF–1.3M
4.
Lin28a/let-7 pathway modulates the Hox code via Polycomb regulation during axial patterning in vertebrates
Tempei Sato, Kensuke Kataoka, Yoshiaki Ito, Shigetoshi Yokoyama, Masafumi Inui, Masaki Mori, Satoru Takahashi, Keiichi Akita, Shuji Takada, Hiroe Ueno-Kudoh, Hiroshi Asahara
eLife. 2020; 9: e53608. Published online 2020 May 29. doi: 10.7554/eLife.53608
PMCID:
PMC7259951
AbstractArticlePDF–5.5M
5.
Distal Limb Patterning Requires Modulation of cis-Regulatory Activities by HOX13
Rushikesh Sheth, Iros Barozzi, David Langlais, Marco Osterwalder, Stephen Nemec, Hanqian L. Carlson, H. Scott Stadler, Axel Visel, Jacques Drouin, Marie Kmita
Cell Rep. Author manuscript; available in PMC 2017 Nov 21.
Published in final edited form as: Cell Rep. 2016 Dec 13; 17(11): 2913–2926. doi: 10.1016/j.celrep.2016.11.039
PMCID:
PMC5697718
AbstractArticlePDF–2.2M
6.
Hotair Is Dispensible for Mouse Development
Ana Rita Amândio, Anamaria Necsulea, Elisabeth Joye, Bénédicte Mascrez, Denis Duboule
PLoS Genet. 2016 Dec; 12(12): e1006232. Published online 2016 Dec 15. doi: 10.1371/journal.pgen.1006232
PMCID:
PMC5157951
AbstractArticlePDF–2.6M
7.
Tetrapod axial evolution and developmental constraints; Empirical underpinning by a mouse model
Joost M. Woltering, Denis Duboule
Mech Dev. 2015 Nov; 138: 64–72. doi: 10.1016/j.mod.2015.07.006
PMCID:
PMC4678112
AbstractArticle
8.
Independent regulation of vertebral number and vertebral identity by microRNA-196 paralogs
Siew Fen Lisa Wong, Vikram Agarwal, Jennifer H. Mansfield, Nicolas Denans, Matthew G. Schwartz, Haydn M. Prosser, Olivier Pourquié, David P. Bartel, Clifford J. Tabin, Edwina McGlinn
Proc Natl Acad Sci U S A. 2015 Sep 1; 112(35): E4884–E4893. Published online 2015 Aug 17. doi: 10.1073/pnas.1512655112
PMCID:
PMC4568285
AbstractArticlePDF–1.6M
9.
A high resolution spatiotemporal atlas of gene expression of the developing mouse brain
Carol L. Thompson, Lydia Ng, Vilas Menon, Salvador Martinez, Chang-Kyu Lee, Katie Glattfelder, Susan M. Sunkin, Alex Henry, Christopher Lau, Chinh Dang, Raquel Garcia-Lopez, Almudena Martinez-Ferre, Ana Pombero, John L.R. Rubenstein, Wayne B. Wakeman, John Hohmann, Nick Dee, Andrew J. Sodt, Rob Young, Kimberly Smith, Thuc-Nghi Nguyen, Jolene Kidney, Leonard Kuan, Andreas Jeromin, Ajamete Kaykas, Jeremy Miller, Damon Page, Geri Orta, Amy Bernard, Zackery Riley, Simon Smith, Paul Wohnoutka, Mike Hawrylycz, Luis Puelles, Allan R. Jones
Neuron. Author manuscript; available in PMC 2015 Jul 16.
Published in final edited form as: Neuron. 2014 Jul 16; 83(2): 309–323. Published online 2014 Jun 19. doi: 10.1016/j.neuron.2014.05.033
PMCID:
PMC4319559
AbstractArticlePDF–3.0M
10.
Targeted disruption of Hotair leads to homeotic transformation and gene de-repression
Lingjie Li, Bo Liu, Orly L. Wapinski, Miao-Chih Tsai, Kun Qu, Jiajing Zhang, Jeff C. Carlson, Meihong Lin, Fengqin Fang, Rajnish A. Gupta, Jill A. Helms, Howard Y. Chang
Cell Rep. Author manuscript; available in PMC 2014 May 29.
Published in final edited form as: Cell Rep. 2013 Oct 17; 5(1): 3–12. Published online 2013 Sep 26. doi: 10.1016/j.celrep.2013.09.003
PMCID:
PMC4038295
AbstractArticlePDF–1.6M
11.
Hoxc Gene Collinear Expression and Epigenetic Modifications Established during Embryogenesis Are Maintained until after Birth
Hyehyun Min, Ji-Yeon Lee, Myoung Hee Kim
Int J Biol Sci. 2013; 9(9): 960–965. Published online 2013 Sep 22. doi: 10.7150/ijbs.6739
PMCID:
PMC3805901
AbstractArticlePDF–813K
12.
A conditional knockout resource for the genome–wide study of mouse gene function
William C. Skarnes, Barry Rosen, Anthony P. West, Manousos Koutsourakis, Wendy Bushell, Vivek Iyer, Alejandro O. Mujica, Mark Thomas, Jennifer Harrow, Tony Cox, David Jackson, Jessica Severin, Patrick Biggs, Jun Fu, Michael Nefedov, Pieter J. de Jong, A. Francis Stewart, Allan Bradley
Nature. Author manuscript; available in PMC 2013 Feb 14.
Published in final edited form as: Nature. 2011 Jun 15; 474(7351): 337–342. Published online 2011 Jun 15. doi: 10.1038/nature10163
PMCID:
PMC3572410
AbstractArticlePDF–1.1M
13.
Changing topographic Hox expression in blood vessels results in regionally distinct vessel wall remodeling
Nathanael D. Pruett, Zoltan Hajdu, Jing Zhang, Richard P. Visconti, Michael J. Kern, Deneen M. Wellik, Mark W. Majesky, Alexander Awgulewitsch
Biol Open. 2012 May 15; 1(5): 430–435. Published online 2012 Mar 20. doi: 10.1242/bio.2012039
PMCID:
PMC3507213
AbstractArticlePDF–577K
14.
Reduction of Hox Gene Expression by Histone H1 Depletion
Yunzhe Zhang, Zheng Liu, Magdalena Medrzycki, Kaixiang Cao, Yuhong Fan
PLoS One. 2012; 7(6): e38829. Published online 2012 Jun 11. doi: 10.1371/journal.pone.0038829
PMCID:
PMC3372500
AbstractArticlePDF–2.2M
15.
Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium
Pascale Gaudet, Michael S. Livstone, Suzanna E. Lewis, Paul D. Thomas
Brief Bioinform. 2011 Sep; 12(5): 449–462. Published online 2011 Aug 27. doi: 10.1093/bib/bbr042
PMCID:
PMC3178059
AbstractArticlePDF–1.0M
16.
Hox10 Genes Function in Kidney Development in the Differentiation and Integration of the Cortical Stroma
Alisha R. Yallowitz, Steven M. Hrycaj, Kieran M. Short, Ian M. Smyth, Deneen M. Wellik
PLoS One. 2011; 6(8): e23410. Published online 2011 Aug 16. doi: 10.1371/journal.pone.0023410
PMCID:
PMC3156768
AbstractArticlePDF–2.3M
17.
Reshuffling genomic landscapes to study the regulatory evolution of Hox gene clusters
Patrick Tschopp, Nadine Fraudeau, Frédérique Béna, Denis Duboule
Proc Natl Acad Sci U S A. 2011 Jun 28; 108(26): 10632–10637. Published online 2011 Jun 13. doi: 10.1073/pnas.1102985108
PMCID:
PMC3127922
AbstractArticlePDF–729K
18.
Structural and Functional Differences in the Long Non-Coding RNA Hotair in Mouse and Human
Patrick Schorderet, Denis Duboule
PLoS Genet. 2011 May; 7(5): e1002071. Published online 2011 May 26. doi: 10.1371/journal.pgen.1002071
PMCID:
PMC3102750
AbstractArticlePDF–1.4M
19.
Hox11 genes establish synovial joint organization and phylogenetic characteristics in developing mouse zeugopod skeletal elements
Eiki Koyama, Tadashi Yasuda, Nancy Minugh-Purvis, Takashi Kinumatsu, Alisha R. Yallowitz, Deneen M. Wellik, Maurizio Pacifici
Development. 2010 Nov 15; 137(22): 3795–3800. doi: 10.1242/dev.053447
PMCID:
PMC3049277
AbstractArticle
20.
A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo
Graciana Diez-Roux, Sandro Banfi, Marc Sultan, Lars Geffers, Santosh Anand, David Rozado, Alon Magen, Elena Canidio, Massimiliano Pagani, Ivana Peluso, Nathalie Lin-Marq, Muriel Koch, Marchesa Bilio, Immacolata Cantiello, Roberta Verde, Cristian De Masi, Salvatore A. Bianchi, Juliette Cicchini, Elodie Perroud, Shprese Mehmeti, Emilie Dagand, Sabine Schrinner, Asja Nürnberger, Katja Schmidt, Katja Metz, Christina Zwingmann, Norbert Brieske, Cindy Springer, Ana Martinez Hernandez, Sarah Herzog, Frauke Grabbe, Cornelia Sieverding, Barbara Fischer, Kathrin Schrader, Maren Brockmeyer, Sarah Dettmer, Christin Helbig, Violaine Alunni, Marie-Annick Battaini, Carole Mura, Charlotte N. Henrichsen, Raquel Garcia-Lopez, Diego Echevarria, Eduardo Puelles, Elena Garcia-Calero, Stefan Kruse, Markus Uhr, Christine Kauck, Guangjie Feng, Nestor Milyaev, Chuang Kee Ong, Lalit Kumar, MeiSze Lam, Colin A. Semple, Attila Gyenesei, Stefan Mundlos, Uwe Radelof, Hans Lehrach, Paolo Sarmientos, Alexandre Reymond, Duncan R. Davidson, Pascal Dollé, Stylianos E. Antonarakis, Marie-Laure Yaspo, Salvador Martinez, Richard A. Baldock, Gregor Eichele, Andrea Ballabio
PLoS Biol. 2011 Jan; 9(1): e1000582. Published online 2011 Jan 18. doi: 10.1371/journal.pbio.1000582
PMCID:
PMC3022534
AbstractArticlePDF–3.8M

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