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Items: 1 to 20 of 59

1.
Protein interaction network revealed by quantitative proteomic analysis links TFIIB to multiple aspects of the transcription cycle
Michael J. O’Brien, Athar Ansari
Biochim Biophys Acta Proteins Proteom. Author manuscript; available in PMC 2024 Feb 16.
Published in final edited form as: Biochim Biophys Acta Proteins Proteom. 2024 Jan 1; 1872(1): 140968. Published online 2023 Oct 19. doi: 10.1016/j.bbapap.2023.140968
PMCID:
PMC10872477
AbstractArticlePDF–1.7M
2.
The social and structural architecture of the yeast protein interactome
André C. Michaelis, Andreas-David Brunner, Maximilian Zwiebel, Florian Meier, Maximilian T. Strauss, Isabell Bludau, Matthias Mann
Nature. 2023; 624(7990): 192–200. Published online 2023 Nov 15. doi: 10.1038/s41586-023-06739-5
PMCID:
PMC10700138
AbstractArticlePDF–20M
3.
Nuclear pore complexes mediate subtelomeric gene silencing by regulating PCNA levels on chromatin
Sanjeev Kumar Choudhry, Maxwell L. Neal, Song Li, Arti T. Navare, Trevor Van Eeuwen, Richard W. Wozniak, Fred D. Mast, Michael P. Rout, John D. Aitchison
J Cell Biol. 2023 Sep 4; 222(9): e202207060. Published online 2023 Jun 26. doi: 10.1083/jcb.202207060
PMCID:
PMC10292210
AbstractArticlePDF–5.9M
4.
A systematic proximity ligation approach to studying protein‐substrate specificity identifies the substrate spectrum of the Ssh1 translocon
Nir Cohen, Naama Aviram, Maya Schuldiner
EMBO J. 2023 Jun; 42(11): e113385. Published online 2023 Apr 19. doi: 10.15252/embj.2022113385
PMCID:
PMC10233368
AbstractArticlePDF–1.2M
5.
An amphipathic helix in Brl1 is required for nuclear pore complex biogenesis in S. cerevisiae
Annemarie Kralt, Matthias Wojtynek, Jonas S Fischer, Arantxa Agote-Aran, Roberta Mancini, Elisa Dultz, Elad Noor, Federico Uliana, Marianna Tatarek-Nossol, Wolfram Antonin, Evgeny Onischenko, Ohad Medalia, Karsten Weis
eLife. 2022; 11: e78385. Published online 2022 Aug 24. doi: 10.7554/eLife.78385
PMCID:
PMC9402233
AbstractArticlePDF–14M
6.
Mediator recruits the cohesin loader Scc2 to RNA Pol II-transcribed genes and promotes sister chromatid cohesion
Mark Mattingly, Chris Seidel, Sofía Muñoz, Yan Hao, Ying Zhang, Zhihui Wen, Laurence Florens, Frank Uhlmann, Jennifer L. Gerton
Curr Biol. 2022 Jul 11; 32(13): 2884–2896.e6. doi: 10.1016/j.cub.2022.05.019
PMCID:
PMC9286023
AbstractArticle
7.
New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources
Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry
Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224
PMCID:
PMC9209811
AbstractArticlePDF–818K
8.
Heh2/Man1 may be an evolutionarily conserved sensor of NPC assembly state
Sapan Borah, David J. Thaller, Zhanna Hakhverdyan, Elisa C. Rodriguez, Anthony W. Isenhour, Michael P. Rout, Megan C. King, C. Patrick Lusk
Mol Biol Cell. 2021 Jul 15; 32(15): 1359–1373. doi: 10.1091/mbc.E20-09-0584
PMCID:
PMC8694041
AbstractArticlePDF–2.5M
9.
Dissecting the Structural Dynamics of the Nuclear Pore Complex
Zhanna Hakhverdyan, Kelly R. Molloy, Sarah Keegan, Thurston Herricks, Dante M. Lepore, Mary Munson, Roman I. Subbotin, David Fenyo, John D. Aitchison, Javier Fernandez-Martinez, Brian T. Chait, Michael P. Rout
Mol Cell. Author manuscript; available in PMC 2022 Jan 7.
Published in final edited form as: Mol Cell. 2021 Jan 7; 81(1): 153–165.e7. Published online 2020 Dec 16. doi: 10.1016/j.molcel.2020.11.032
PMCID:
PMC8121378
AbstractArticlePDF–2.1M
10.
Cross-compartment signal propagation in the mitotic exit network
Xiaoxue Zhou, Wenxue Li, Yansheng Liu, Angelika Amon
eLife. 2021; 10: e63645. Published online 2021 Jan 22. doi: 10.7554/eLife.63645
PMCID:
PMC7822594
AbstractArticlePDF–4.3M
11.
The deubiquitylase Ubp15 couples transcription to mRNA export
Fanny Eyboulet, Célia Jeronimo, Jacques Côté, François Robert
eLife. 2020; 9: e61264. Published online 2020 Nov 23. doi: 10.7554/eLife.61264
PMCID:
PMC7682988
AbstractArticlePDF–1.4M
12.
Altered rRNA processing disrupts nuclear RNA homeostasis via competition for the poly(A)-binding protein Nab2
Lisbeth-Carolina Aguilar, Biplab Paul, Taylor Reiter, Louis Gendron, Arvind Arul Nambi Rajan, Rachel Montpetit, Christian Trahan, Sebastian Pechmann, Marlene Oeffinger, Ben Montpetit
Nucleic Acids Res. 2020 Nov 18; 48(20): 11675–11694. Published online 2020 Nov 2. doi: 10.1093/nar/gkaa964
PMCID:
PMC7672433
AbstractArticlePDF–6.0M
13.
TORC1 inactivation stimulates autophagy of nucleoporin and nuclear pore complexes
Yui Tomioka, Tetsuya Kotani, Hiromi Kirisako, Yu Oikawa, Yayoi Kimura, Hisashi Hirano, Yoshinori Ohsumi, Hitoshi Nakatogawa
J Cell Biol. 2020 Jul 6; 219(7): e201910063. Published online 2020 May 26. doi: 10.1083/jcb.201910063
PMCID:
PMC7337488
AbstractArticlePDF–4.0M
14.
Allosteric modulation of nucleoporin assemblies by intrinsically disordered regions
Bartlomiej Jan Blus, Junseock Koh, Aleksandra Krolak, Hyuk-Soo Seo, Elias Coutavas, Günter Blobel
Sci Adv. 2019 Nov; 5(11): eaax1836. Published online 2019 Nov 27. doi: 10.1126/sciadv.aax1836
PMCID:
PMC6881172
AbstractArticlePDF–3.5M
15.
Mapping the native organization of the yeast nuclear pore complex using nuclear radial intensity measurements
Pascal Vallotton, Sasikumar Rajoo, Matthias Wojtynek, Evgeny Onischenko, Annemarie Kralt, Carina Patrizia Derrer, Karsten Weis
Proc Natl Acad Sci U S A. 2019 Jul 16; 116(29): 14606–14613. Published online 2019 Jul 1. doi: 10.1073/pnas.1903764116
PMCID:
PMC6642398
AbstractArticlePDF–1.6M
16.
Effect of Sec61 interaction with Mpd1 on endoplasmic reticulum-associated degradation
Fabio Pereira, Mandy Rettel, Frank Stein, Mikhail M. Savitski, Ian Collinson, Karin Römisch
PLoS One. 2019; 14(1): e0211180. Published online 2019 Jan 25. doi: 10.1371/journal.pone.0211180
PMCID:
PMC6347170
AbstractArticlePDF–16M
17.
Integrative Structure and Functional Anatomy of a Nuclear Pore Complex
Seung Joong Kim, Javier Fernandez-Martinez, Ilona Nudelman, Yi Shi, Wenzhu Zhang, Barak Raveh, Thurston Herricks, Brian D. Slaughter, Joanna Hogan, Paula Upla, Ilan E. Chemmama, Riccardo Pellarin, Ignacia Echeverria, Manjunatha Shivaraju, Azraa S. Chaudhury, Junjie Wang, Rosemary Williams, Jay R. Unruh, Charles H. Greenberg, Erica Y. Jacobs, Zhiheng Yu, M. Jason de la Cruz, Roxana Mironska, David L. Stokes, John D. Aitchison, Martin F. Jarrold, Jennifer L. Gerton, Steven J. Ludtke, Christopher W. Akey, Brian T. Chait, Andrej Sali, Michael P. Rout
Nature. Author manuscript; available in PMC 2018 Sep 14.
Published in final edited form as: Nature. 2018 Mar 22; 555(7697): 475–482. Published online 2018 Mar 14. doi: 10.1038/nature26003
PMCID:
PMC6022767
AbstractArticlePDF–9.5M
18.
Natively unfolded FG-repeats stabilize the structure of the nuclear pore complex
Evgeny Onischenko, Jeffrey H. Tang, Kasper R. Andersen, Kevin E. Knockenhauer, Pascal Vallotton, Carina P. Derrer, Annemarie Kralt, Christopher F. Mugler, Leon Y. Chan, Thomas U. Schwartz, Karsten Weis
Cell. Author manuscript; available in PMC 2018 Nov 2.
Published in final edited form as: Cell. 2017 Nov 2; 171(4): 904–917.e19. Published online 2017 Oct 12. doi: 10.1016/j.cell.2017.09.033
PMCID:
PMC5992322
AbstractArticlePDF–1.4M
19.
Stoichiometry and compositional plasticity of the yeast nuclear pore complex revealed by quantitative fluorescence microscopy
Sasikumar Rajoo, Pascal Vallotton, Evgeny Onischenko, Karsten Weis
Proc Natl Acad Sci U S A. 2018 Apr 24; 115(17): E3969–E3977. Published online 2018 Apr 9. doi: 10.1073/pnas.1719398115
PMCID:
PMC5924907
AbstractArticlePDF–1.0M
20.
A global interaction network maps a wiring diagram of cellular function
Michael Costanzo, Benjamin VanderSluis, Elizabeth N. Koch, Anastasia Baryshnikova, Carles Pons, Guihong Tan, Wen Wang, Matej Usaj, Julia Hanchard, Susan D. Lee, Vicent Pelechano, Erin B. Styles, Maximilian Billmann, Jolanda van Leeuwen, Nydia van Dyk, Zhen-Yuan Lin, Elena Kuzmin, Justin Nelson, Jeff S. Piotrowski, Tharan Srikumar, Sondra Bahr, Yiqun Chen, Raamesh Deshpande, Christoph F. Kurat, Sheena C. Li, Zhijian Li, Mojca Mattiazzi Usaj, Hiroki Okada, Natasha Pascoe, Bryan-Joseph San Luis, Sara Sharifpoor, Emira Shuteriqi, Scott W. Simpkins, Jamie Snider, Harsha Garadi Suresh, Yizhao Tan, Hongwei Zhu, Noel Malod-Dognin, Vuk Janjic, Natasa Przulj, Olga G. Troyanskaya, Igor Stagljar, Tian Xia, Yoshikazu Ohya, Anne-Claude Gingras, Brian Raught, Michael Boutros, Lars M. Steinmetz, Claire L. Moore, Adam P. Rosebrock, Amy A. Caudy, Chad L. Myers, Brenda Andrews, Charles Boone
Science. Author manuscript; available in PMC 2017 Oct 30.
Published in final edited form as: Science. 2016 Sep 23; 353(6306): aaf1420. doi: 10.1126/science.aaf1420
PMCID:
PMC5661885
AbstractArticlePDF–2.6M

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