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Select item 105658761.

Pulse-SILAC and Interactomics Reveal Distinct DDB1-CUL4–Associated Factors, Cellular Functions, and Protein Substrates

Jennifer Raisch, Marie-Line Dubois, Marika Groleau, Dominique Lévesque, Thomas Burger, Carla-Marie Jurkovic, Romain Brailly, Gwendoline Marbach, Alyson McKenna, Catherine Barrette, Pierre-Étienne Jacques, François-Michel Boisvert

Mol Cell Proteomics. 2023 Oct; 22(10): 100644. Published online 2023 Sep 7. doi: 10.1016/j.mcpro.2023.100644

PMCID:: PMC10565876

Abstract Article PDF–3.7M

Select item 100351302.

Identification of ZBTB4 as an immunological biomarker that can inhibit the proliferation and invasion of pancreatic cancer

Zhe Yang, Feiran Chen, Feng Wang, Xiubing Chen, Biaolin Zheng, Xiaomin Liao, Zhejun Deng, Xianxian Ruan, Jing Ning, Qing Li, Haixing Jiang, Shanyu Qin

BMC Cancer. 2023; 23: 263. Published online 2023 Mar 22. doi: 10.1186/s12885-023-10749-x

PMCID:: PMC10035130

Abstract Article PDF–14M

Select item 99412813.

miRNA-576-5p promotes endometrial cancer cell growth and metastasis by targeting ZBTB4

Chen Chen, Qing Zhang, Beihua Kong

Clin Transl Oncol. 2023; 25(3): 706–720. Published online 2022 Dec 20. doi: 10.1007/s12094-022-02976-8

PMCID:: PMC9941281

Abstract Article PDF–15M

Select item 93485764.

Chr21 protein–protein interactions: enrichment in proteins involved in intellectual disability, autism, and late-onset Alzheimer’s disease

Julia Viard, Yann Loe-Mie, Rachel Daudin, Malik Khelfaoui, Christine Plancon, Anne Boland, Francisco Tejedor, Richard L Huganir, Eunjoon Kim, Makoto Kinoshita, Guofa Liu, Volker Haucke, Thomas Moncion, Eugene Yu, Valérie Hindie, Henri Bléhaut, Clotilde Mircher, Yann Herault, Jean-François Deleuze, Jean-Christophe Rain, Michel Simonneau, Aude-Marie Lepagnol-Bestel

Life Sci Alliance. 2022 Dec; 5(12): e202101205. Published online 2022 Aug 1. doi: 10.26508/lsa.202101205

PMCID:: PMC9348576

Abstract Article PDF–3.0M

Select item 92626145.

A dual-activity topoisomerase complex regulates mRNA translation and turnover

Shuaikun Su, Yutong Xue, Alexei Sharov, Yongqing Zhang, Seung Kyu Lee, Jennifer L Martindale, Wen Li, Wai Lim Ku, Keji Zhao, Supriyo De, Weiping Shen, Payel Sen, Myriam Gorospe, Dongyi Xu, Weidong Wang

Nucleic Acids Res. 2022 Jul 8; 50(12): 7013–7033. Published online 2022 Jun 24. doi: 10.1093/nar/gkac538

PMCID:: PMC9262614

Abstract Article PDF–3.6M

Select item 86293906.

ATRX proximal protein associations boast roles beyond histone deposition

William A. Scott, Erum Z. Dhanji, Boris J. A. Dyakov, Ema S. Dreseris, Jonathon S. Asa, Laura J. Grange, Mila Mirceta, Christopher E. Pearson, Grant S. Stewart, Anne-Claude Gingras, Eric I. Campos

PLoS Genet. 2021 Nov; 17(11): e1009909. Published online 2021 Nov 15. doi: 10.1371/journal.pgen.1009909

PMCID:: PMC8629390

Abstract Article PDF–4.0M

Select item 81650307.

Dual Proteome-scale Networks Reveal Cell-specific Remodeling of the Human Interactome

Edward L. Huttlin, Raphael J. Bruckner, Jose Navarrete-Perea, Joe R. Cannon, Kurt Baltier, Fana Gebreab, Melanie P. Gygi, Alexandra Thornock, Gabriela Zarraga, Stanley Tam, John Szpyt, Brandon M. Gassaway, Alexandra Panov, Hannah Parzen, Sipei Fu, Arvene Golbazi, Eila Maenpaa, Keegan Stricker, Sanjukta Guha Thakurta, Tian Zhang, Ramin Rad, Joshua Pan, David P. Nusinow, Joao A. Paulo, Devin K. Schweppe, Laura Pontano Vaites, J. Wade Harper, Steven P. Gygi

Cell. Author manuscript; available in PMC 2022 May 27.

Published in final edited form as: Cell. 2021 May 27; 184(11): 3022–3040.e28. Published online 2021 May 6. doi: 10.1016/j.cell.2021.04.011

PMCID:: PMC8165030

Abstract Article PDF–2.2M

Select item 71699838.

A reference map of the human binary protein interactome

Katja Luck, Dae-Kyum Kim, Luke Lambourne, Kerstin Spirohn, Bridget E. Begg, Wenting Bian, Ruth Brignall, Tiziana Cafarelli, Francisco J. Campos-Laborie, Benoit Charloteaux, Dongsic Choi, Atina G. Coté, Meaghan Daley, Steven Deimling, Alice Desbuleux, Amélie Dricot, Marinella Gebbia, Madeleine F. Hardy, Nishka Kishore, Jennifer J. Knapp, István A. Kovács, Irma Lemmens, Miles W. Mee, Joseph C. Mellor, Carl Pollis, Carles Pons, Aaron D. Richardson, Sadie Schlabach, Bridget Teeking, Anupama Yadav, Mariana Babor, Dawit Balcha, Omer Basha, Christian Bowman-Colin, Suet-Feung Chin, Soon Gang Choi, Claudia Colabella, Georges Coppin, Cassandra D’Amata, David De Ridder, Steffi De Rouck, Miquel Duran-Frigola, Hanane Ennajdaoui, Florian Goebels, Liana Goehring, Anjali Gopal, Ghazal Haddad, Elodie Hatchi, Mohamed Helmy, Yves Jacob, Yoseph Kassa, Serena Landini, Roujia Li, Natascha van Lieshout, Andrew MacWilliams, Dylan Markey, Joseph N. Paulson, Sudharshan Rangarajan, John Rasla, Ashyad Rayhan, Thomas Rolland, Adriana San-Miguel, Yun Shen, Dayag Sheykhkarimli, Gloria M. Sheynkman, Eyal Simonovsky, Murat Taşan, Alexander Tejeda, Vincent Tropepe, Jean-Claude Twizere, Yang Wang, Robert J. Weatheritt, Jochen Weile, Yu Xia, Xinping Yang, Esti Yeger-Lotem, Quan Zhong, Patrick Aloy, Gary D. Bader, Javier De Las Rivas, Suzanne Gaudet, Tong Hao, Janusz Rak, Jan Tavernier, David E. Hill, Marc Vidal, Frederick P. Roth, Michael A. Calderwood

Nature. Author manuscript; available in PMC 2020 Oct 8.

Published in final edited form as: Nature. 2020 Apr; 580(7803): 402–408. Published online 2020 Apr 8. doi: 10.1038/s41586-020-2188-x

PMCID:: PMC7169983

Abstract Article PDF–5.4M

Select item 59026679.

Variants regulating ZBTB4 are associated with age-at-onset of Alzheimer’s disease

Elizabeth E. Blue, Chang-En Yu, Timothy A. Thornton, Nicola H. Chapman, Eric Kernfeld, Nan Jiang, Kathryn M. Shively, Kati J. Buckingham, Colby T. Marvin, Michael J. Bamshad, Thomas D. Bird, Ellen M. Wijsman

Genes Brain Behav. Author manuscript; available in PMC 2019 Jul 1.

Published in final edited form as: Genes Brain Behav. 2018 Jul; 17(6): e12429. Published online 2017 Nov 20. doi: 10.1111/gbb.12429

PMCID:: PMC5902667

Abstract Article PDF–447K

Select item 553161110.

Architecture of the human interactome defines protein communities and disease networks

Edward L. Huttlin, Raphael J. Bruckner, Joao A. Paulo, Joe R. Cannon, Lily Ting, Kurt Baltier, Greg Colby, Fana Gebreab, Melanie P. Gygi, Hannah Parzen, John Szpyt, Stanley Tam, Gabriela Zarraga, Laura Pontano-Vaites, Sharan Swarup, Anne E. White, Devin K. Schweppe, Ramin Rad, Brian K. Erickson, Robert A. Obar, K.G. Guruharsha, Kejie Li, Spyros Artavanis-Tsakonas, Steven P. Gygi, J. Wade Harper

Nature. Author manuscript; available in PMC 2017 Nov 17.

Published in final edited form as: Nature. 2017 May 25; 545(7655): 505–509. Published online 2017 May 17. doi: 10.1038/nature22366

PMCID:: PMC5531611

Abstract Article PDF–2.7M

Select item 463363611.

LRF maintains genome integrity by regulating the non-homologous end joining pathway of DNA repair

Xue-Song Liu, Gurushankar Chandramouly, Emilie Rass, Yinghua Guan, Guocan Wang, Robin M. Hobbs, Anbazhagan Rajendran, Anyong Xie, Jagesh V. Shah, Anthony J. Davis, Ralph Scully, Andrea Lunardi, Pier Paolo Pandolfi

Nat Commun. 2015; 6: 8325. Published online 2015 Oct 8. doi: 10.1038/ncomms9325

PMCID:: PMC4633636

Abstract Article PDF–2.3M

Select item 430926112.

The Transcriptional Repressor ZBTB4 Regulates EZH2 Through a MicroRNA-ZBTB4-Specificity Protein Signaling Axis

Won Seok Yang, Gayathri Chadalapaka, Sung-Gook Cho, Syng-ook Lee, Un-Ho Jin, Indira Jutooru, Kwangmin Choi, Yuet-Kin Leung, Shuk-Mei Ho, Stephen Safe, Kyounghyun Kim

Neoplasia. 2014 Dec; 16(12): 1059–1069. Published online 2014 Dec 9. doi: 10.1016/j.neo.2014.09.011

PMCID:: PMC4309261

Abstract Article PDF–792K

Select item 400273413.

Yeast two-hybrid screening of proteins interacting with plasmin receptor subunit: C-terminal fragment of annexin A2

Qun Li, Yves Laumonnier, Tatiana Syrovets, Thomas Simmet

Acta Pharmacol Sin. 2011 Nov; 32(11): 1411–1418. Published online 2011 Oct 3. doi: 10.1038/aps.2011.121

PMCID:: PMC4002734

Abstract Article PDF–1.2M

Select item 352100814.

Kaiso Directs the Transcriptional Corepressor MTG16 to the Kaiso Binding Site in Target Promoters

Caitlyn W. Barrett, J. Joshua Smith, Lauren C. Lu, Nicholas Markham, Kristy R. Stengel, Sarah P. Short, Baolin Zhang, Aubrey A. Hunt, Barbara M. Fingleton, Robert H. Carnahan, Michael E. Engel, Xi Chen, R. Daniel Beauchamp, Keith T. Wilson, Scott W. Hiebert, Albert B. Reynolds, Christopher S. Williams

PLoS One. 2012; 7(12): e51205. Published online 2012 Dec 12. doi: 10.1371/journal.pone.0051205

PMCID:: PMC3521008

Abstract Article PDF–1.3M

Select item 328819215.

IDENTIFICATION OF ONCOGENIC MicroRNA-17-92/ZBTB4/SPECIFICITY PROTEIN AXIS IN BREAST CANCER

Kyounghyun Kim, Gayathri Chadalapaka, Syng-ook Lee, Daisuke Yamada, Xavier Sastre-Garau, Pierre-Antoine Defossez, Yun-Yong Park, Ju-Seog Lee, Stephen Safe

Oncogene. Author manuscript; available in PMC 2012 Aug 23.

Published in final edited form as: Oncogene. 2012 Feb 23; 31(8): 1034–1044. Published online 2011 Jul 18. doi: 10.1038/onc.2011.296

PMCID:: PMC3288192

Abstract Article PDF–2.2M

Select item 317805916.

Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium

Pascale Gaudet, Michael S. Livstone, Suzanna E. Lewis, Paul D. Thomas

Brief Bioinform. 2011 Sep; 12(5): 449–462. Published online 2011 Aug 27. doi: 10.1093/bib/bbr042

PMCID:: PMC3178059

Abstract Article PDF–1.0M

Select item 292661817.

Sequence-specific recognition of methylated DNA by human zinc-finger proteins

Nobuhiro Sasai, Mitsuyoshi Nakao, Pierre-Antoine Defossez

Nucleic Acids Res. 2010 Aug; 38(15): 5015–5022. Published online 2010 Apr 19. doi: 10.1093/nar/gkq280

PMCID:: PMC2926618

Abstract Article PDF–5.9M

Select item 242672318.

Zbtb4 represses transcription of P21CIP1 and controls the cellular response to p53 activation

Axel Weber, Judith Marquardt, David Elzi, Nicole Forster, Sven Starke, Andre Glaum, Daisuke Yamada, Pierre-Antoine Defossez, Jeffrey Delrow, Robert N Eisenman, Holger Christiansen, Martin Eilers

EMBO J. 2008 Jun 4; 27(11): 1563–1574. Published online 2008 May 1. doi: 10.1038/emboj.2008.85

PMCID:: PMC2426723

Abstract Article PDF–294K

Select item 135612919.

Diversification of transcriptional modulation: Large-scale identification and characterization of putative alternative promoters of human genes

Kouichi Kimura, Ai Wakamatsu, Yutaka Suzuki, Toshio Ota, Tetsuo Nishikawa, Riu Yamashita, Jun-ichi Yamamoto, Mitsuo Sekine, Katsuki Tsuritani, Hiroyuki Wakaguri, Shizuko Ishii, Tomoyasu Sugiyama, Kaoru Saito, Yuko Isono, Ryotaro Irie, Norihiro Kushida, Takahiro Yoneyama, Rie Otsuka, Katsuhiro Kanda, Takahide Yokoi, Hiroshi Kondo, Masako Wagatsuma, Katsuji Murakawa, Shinichi Ishida, Tadashi Ishibashi, Asako Takahashi-Fujii, Tomoo Tanase, Keiichi Nagai, Hisashi Kikuchi, Kenta Nakai, Takao Isogai, Sumio Sugano

Genome Res. 2006 Jan; 16(1): 55–65. doi: 10.1101/gr.4039406

PMCID:: PMC1356129

Abstract Article PDF–438K

Select item 131762920.

A Family of Human Zinc Finger Proteins That Bind Methylated DNA and Repress Transcription

Guillaume J. P. Filion, Svetlana Zhenilo, Sergey Salozhin, Daisuke Yamada, Egor Prokhortchouk, Pierre-Antoine Defossez

Mol Cell Biol. 2006 Jan; 26(1): 169–181. doi: 10.1128/MCB.26.1.169-181.2006

PMCID:: PMC1317629

Abstract Article PDF–1.0M

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