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Items: 1 to 20 of 70

1.
ESRP1 controls biogenesis and function of a large abundant multiexon circRNA
Dawei Liu, B Kate Dredge, Andrew G Bert, Katherine A Pillman, John Toubia, Wenting Guo, Boris J A Dyakov, Melodie M Migault, Vanessa M Conn, Simon J Conn, Philip A Gregory, Anne-Claude Gingras, Dinshaw Patel, Baixing Wu, Gregory J Goodall
Nucleic Acids Res. 2024 Feb 9; 52(3): 1387–1403. Published online 2023 Nov 28. doi: 10.1093/nar/gkad1138
PMCID:
PMC10853802
AbstractArticlePDF–2.5M
2.
DOCK1 insufficiency disrupts trophoblast function and pregnancy outcomes via DUSP4-ERK pathway
Yichi Xu, Xiaorui Liu, Weihong Zeng, Yueyue Zhu, Junpeng Dong, Fan Wu, Cailian Chen, Surendra Sharma, Yi Lin
Life Sci Alliance. 2024 Feb; 7(2): e202302247. Published online 2023 Nov 15. doi: 10.26508/lsa.202302247
PMCID:
PMC10651491
AbstractArticlePDF–5.1M
3.
TRIM67 drives tumorigenesis in oligodendrogliomas through Rho GTPase-dependent membrane blebbing
Engin Demirdizen, Ruslan Al-Ali, Ashwin Narayanan, Xueyuan Sun, Julianna Patricia Varga, Bianca Steffl, Manuela Brom, Damir Krunic, Claudia Schmidt, Gabriele Schmidt, Felix Bestvater, Julian Taranda, Şevin Turcan
Neuro Oncol. 2023 Jun; 25(6): 1031–1043. Published online 2022 Nov 22. doi: 10.1093/neuonc/noac233
PMCID:
PMC10237422
AbstractArticlePDF–23M
4.
Cross-linking mass spectrometry discovers, evaluates, and corroborates structures and protein–protein interactions in the human cell
Tara K. Bartolec, Xabier Vázquez-Campos, Alexander Norman, Clement Luong, Marcus Johnson, Richard J. Payne, Marc R. Wilkins, Joel P. Mackay, Jason K. K. Low
Proc Natl Acad Sci U S A. 2023 Apr 25; 120(17): e2219418120. Published online 2023 Apr 18. doi: 10.1073/pnas.2219418120
PMCID:
PMC10151615
AbstractArticlePDF–2.9M
5.
Scalable multiplex co-fractionation/mass spectrometry platform for accelerated protein interactome discovery
Pierre C. Havugimana, Raghuveera Kumar Goel, Sadhna Phanse, Ahmed Youssef, Dzmitry Padhorny, Sergei Kotelnikov, Dima Kozakov, Andrew Emili
Nat Commun. 2022; 13: 4043. Published online 2022 Jul 13. doi: 10.1038/s41467-022-31809-z
PMCID:
PMC9279285
AbstractArticlePDF–2.5M
6.
OpenCell: proteome-scale endogenous tagging enables the cartography of human cellular organization
Nathan H. Cho, Keith C. Cheveralls, Andreas-David Brunner, Kibeom Kim, André C. Michaelis, Preethi Raghavan, Hirofumi Kobayashi, Laura Savy, Jason Y. Li, Hera Canaj, James Y.S. Kim, Edna M. Stewart, Christian Gnann, Frank McCarthy, Joana P. Cabrera, Rachel M. Brunetti, Bryant B. Chhun, Greg Dingle, Marco Y. Hein, Bo Huang, Shalin B. Mehta, Jonathan S. Weissman, Rafael Gómez-Sjöberg, Daniel N. Itzhak, Loic A. Royer, Matthias Mann, Manuel D. Leonetti
Science. Author manuscript; available in PMC 2022 Sep 11.
Published in final edited form as: Science. 2022 Mar 11; 375(6585): eabi6983. Published online 2022 Mar 11. doi: 10.1126/science.abi6983
PMCID:
PMC9119736
AbstractArticlePDF–3.3M
7.
Proteome‐scale mapping of binding sites in the unstructured regions of the human proteome
Caroline Benz, Muhammad Ali, Izabella Krystkowiak, Leandro Simonetti, Ahmed Sayadi, Filip Mihalic, Johanna Kliche, Eva Andersson, Per Jemth, Norman E Davey, Ylva Ivarsson
Mol Syst Biol. 2022 Jan; 18(1): e10584. Published online 2022 Jan 19. doi: 10.15252/msb.202110584
PMCID:
PMC8769072
AbstractArticlePDF–2.9M
8.
CircDOCK1 promotes the tumorigenesis and cisplatin resistance of osteogenic sarcoma via the miR-339-3p/IGF1R axis
Shenglong Li, Fei Liu, Ke Zheng, Wei Wang, Enduo Qiu, Yi Pei, Shuang Wang, Jiaming Zhang, Xiaojing Zhang
Mol Cancer. 2021; 20: 161. Published online 2021 Dec 7. doi: 10.1186/s12943-021-01453-0
PMCID:
PMC8650521
AbstractArticlePDF–13M
9.
BioID reveals an ATG9A interaction with ATG13‐ATG101 in the degradation of p62/SQSTM1‐ubiquitin clusters
Ashari R Kannangara, Daniel M Poole, Colten M McEwan, Joshua C Youngs, Vajira K Weerasekara, Alex M Thornock, Misael T Lazaro, Eranga R Balasooriya, Laura M Oh, Erik J Soderblom, Jonathan J Lee, Daniel L Simmons, Joshua L Andersen
EMBO Rep. 2021 Oct 5; 22(10): e51136. Published online 2021 Aug 9. doi: 10.15252/embr.202051136
PMCID:
PMC8490997
AbstractArticlePDF–4.5M
10.
Dual Proteome-scale Networks Reveal Cell-specific Remodeling of the Human Interactome
Edward L. Huttlin, Raphael J. Bruckner, Jose Navarrete-Perea, Joe R. Cannon, Kurt Baltier, Fana Gebreab, Melanie P. Gygi, Alexandra Thornock, Gabriela Zarraga, Stanley Tam, John Szpyt, Brandon M. Gassaway, Alexandra Panov, Hannah Parzen, Sipei Fu, Arvene Golbazi, Eila Maenpaa, Keegan Stricker, Sanjukta Guha Thakurta, Tian Zhang, Ramin Rad, Joshua Pan, David P. Nusinow, Joao A. Paulo, Devin K. Schweppe, Laura Pontano Vaites, J. Wade Harper, Steven P. Gygi
Cell. Author manuscript; available in PMC 2022 May 27.
Published in final edited form as: Cell. 2021 May 27; 184(11): 3022–3040.e28. Published online 2021 May 6. doi: 10.1016/j.cell.2021.04.011
PMCID:
PMC8165030
AbstractArticlePDF–2.2M
11.
Cancer-associated exportin-6 upregulation inhibits the transcriptionally repressive and anticancer effects of nuclear profilin-1
Cuige Zhu, Sun-Joong Kim, Arshag Mooradian, Faliang Wang, Ziqian Li, Sean Holohan, Patrick L. Collins, Keren Wang, Zhanfang Guo, Jeremy Hoog, Cynthia X. Ma, Eugene M. Oltz, Jason M. Held, Jieya Shao
Cell Rep. Author manuscript; available in PMC 2021 Mar 29.
Published in final edited form as: Cell Rep. 2021 Feb 16; 34(7): 108749. doi: 10.1016/j.celrep.2021.108749
PMCID:
PMC8006859
AbstractArticlePDF–1.7M
12.
LRRC31 inhibits DNA repair and sensitizes breast cancer brain metastasis to radiation therapy
Yanke Chen, Ting Jiang, Hongyi Zhang, Xingchun Gou, Cong Han, Jianhui Wang, Ann T. Chen, Jun Ma, Jun Liu, Zeming Chen, Xintao Jing, Hong Lei, Zhenzhen Wang, Youmei Bao, Mehdi Baqri, Yong Zhu, Ranjit S. Bindra, James E. Hansen, Jun Dou, Chen Huang, Jiangbing Zhou
Nat Cell Biol. Author manuscript; available in PMC 2021 Apr 1.
Published in final edited form as: Nat Cell Biol. 2020 Oct; 22(10): 1276–1285. Published online 2020 Oct 1. doi: 10.1038/s41556-020-00586-6
PMCID:
PMC7962994
AbstractArticlePDF–5.5M
13.
LINC00665 promotes the progression of acute myeloid leukemia by regulating the miR-4458/DOCK1 pathway
Xiaoyu Yang, Yan Wang, Sulei Pang, Xiaojie Li, Panpan Wang, Ruojin Ma, Yunyun Ma, Chunge Song
Sci Rep. 2021; 11: 5009. Published online 2021 Mar 3. doi: 10.1038/s41598-021-82834-9
PMCID:
PMC7930206
AbstractArticlePDF–9.4M
14.
Identifying and treating ROBO1−ve/DOCK1+ve prostate cancer: An aggressive cancer sub-type prevalent in African-American patients
Marina G. Ferrari, Arsheed A. Ganaie, Ashraf Shabenah, Adrian P. Mansini, Li Wang, Paari Murugan, Elai Davicioni, Jinhua Wang, Yibin Deng, Luke H. Hoeppner, Christopher A. Warlick, Badrinath R. Konety, Mohammad Saleem
Prostate. Author manuscript; available in PMC 2021 Sep 1.
Published in final edited form as: Prostate. 2020 Sep; 80(13): 1045–1057. Published online 2020 Jul 20. doi: 10.1002/pros.24018
PMCID:
PMC7556361
AbstractArticlePDF–2.2M
15.
TBOPP enhances the anticancer effect of cisplatin by inhibiting DOCK1 in renal cell carcinoma
Wei Zhang, Xiaoxiao Zheng, Shangzhi Xie, Shufen Zhang, Jiayan Mao, Ying Cai, Xuemei Lu, Wei Chen, Haibin Ni, Liping Xie
Mol Med Rep. 2020 Aug; 22(2): 1187–1194. Published online 2020 Jun 16. doi: 10.3892/mmr.2020.11243
PMCID:
PMC7339706
AbstractArticlePDF–1.8M
16.
Targeting RICTOR sensitizes SMAD4-negative colon cancer to irinotecan
Chen Khuan Wong, Arthur William Lambert, Sait Ozturk, Panagiotis Papageorgis, Delia Lopez, Ning Shen, Zaina Sen, Hamid Mostafavi Abdolmaleky, Balázs Győrffy, Hui Feng, Sam Thiagalingam
Mol Cancer Res. Author manuscript; available in PMC 2020 Sep 1.
Published in final edited form as: Mol Cancer Res. 2020 Mar; 18(3): 414–423. Published online 2020 Jan 13. doi: 10.1158/1541-7786.MCR-19-0525
PMCID:
PMC7115128
AbstractArticlePDF–1.6M
17.
Extensive rewiring of the EGFR network in colorectal cancer cells expressing transforming levels of KRASG13D
Susan A. Kennedy, Mohamed-Ali Jarboui, Sriganesh Srihari, Cinzia Raso, Kenneth Bryan, Layal Dernayka, Theodosia Charitou, Manuel Bernal-Llinares, Carlos Herrera-Montavez, Aleksandar Krstic, David Matallanas, Max Kotlyar, Igor Jurisica, Jasna Curak, Victoria Wong, Igor Stagljar, Thierry LeBihan, Lisa Imrie, Priyanka Pillai, Miriam A. Lynn, Erik Fasterius, Cristina Al-Khalili Szigyarto, James Breen, Christina Kiel, Luis Serrano, Nora Rauch, Oleksii Rukhlenko, Boris N. Kholodenko, Luis F. Iglesias-Martinez, Colm J. Ryan, Ruth Pilkington, Patrizia Cammareri, Owen Sansom, Steven Shave, Manfred Auer, Nicola Horn, Franziska Klose, Marius Ueffing, Karsten Boldt, David J. Lynn, Walter Kolch
Nat Commun. 2020; 11: 499. Published online 2020 Jan 24. doi: 10.1038/s41467-019-14224-9
PMCID:
PMC6981206
AbstractArticlePDF–3.7M
18.
Circular RNA DOCK1 promotes bladder carcinoma progression via modulating circDOCK1/hsa‐miR‐132‐3p/Sox5 signalling pathway
Peihua Liu, Xiaozhou Li, Xi Guo, Jinbo Chen, Chao Li, Minfeng Chen, Longfei Liu, Xiangyang Zhang, Xiongbing Zu
Cell Prolif. 2019 Jul; 52(4): e12614. Published online 2019 Apr 14. doi: 10.1111/cpr.12614
PMCID:
PMC6668968
AbstractArticlePDF–2.4M
19.
USP45 and Spindly are part of the same complex implicated in cell migration
Claudia Conte, Eric R. Griffis, Ian Hickson, Ana B. Perez-Oliva
Sci Rep. 2018; 8: 14375. Published online 2018 Sep 26. doi: 10.1038/s41598-018-32685-8
PMCID:
PMC6158257
AbstractArticlePDF–2.3M
20.
Quantitative mapping of RNA-mediated nuclear estrogen receptor β interactome in human breast cancer cells
Giorgio Giurato, Giovanni Nassa, Annamaria Salvati, Elena Alexandrova, Francesca Rizzo, Tuula A. Nyman, Alessandro Weisz, Roberta Tarallo
Sci Data. 2018; 5: 180031. Published online 2018 Mar 6. doi: 10.1038/sdata.2018.31
PMCID:
PMC5839158
AbstractArticlePDF–1.9M

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