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Items: 15

1.
Dual Proteome-scale Networks Reveal Cell-specific Remodeling of the Human Interactome
Edward L. Huttlin, Raphael J. Bruckner, Jose Navarrete-Perea, Joe R. Cannon, Kurt Baltier, Fana Gebreab, Melanie P. Gygi, Alexandra Thornock, Gabriela Zarraga, Stanley Tam, John Szpyt, Brandon M. Gassaway, Alexandra Panov, Hannah Parzen, Sipei Fu, Arvene Golbazi, Eila Maenpaa, Keegan Stricker, Sanjukta Guha Thakurta, Tian Zhang, Ramin Rad, Joshua Pan, David P. Nusinow, Joao A. Paulo, Devin K. Schweppe, Laura Pontano Vaites, J. Wade Harper, Steven P. Gygi
Cell. Author manuscript; available in PMC 2022 May 27.
Published in final edited form as: Cell. 2021 May 27; 184(11): 3022–3040.e28. Published online 2021 May 6. doi: 10.1016/j.cell.2021.04.011
PMCID:
PMC8165030
AbstractArticlePDF–2.2M
2.
PYHIN1 regulates pro-inflammatory cytokine induction rather than innate immune DNA sensing in airway epithelial cells
Davide Massa, Marcin Baran, Jose A. Bengoechea, Andrew G. Bowie
J Biol Chem. 2020 Apr 3; 295(14): 4438–4450. Published online 2020 Feb 26. doi: 10.1074/jbc.RA119.011400
PMCID:
PMC7135979
AbstractArticlePDF–1.6M
3.
The midbody interactome reveals unexpected roles for PP1 phosphatases in cytokinesis
Luisa Capalbo, Zuni I. Bassi, Marco Geymonat, Sofia Todesca, Liviu Copoiu, Anton J. Enright, Giuliano Callaini, Maria Giovanna Riparbelli, Lu Yu, Jyoti S. Choudhary, Enrico Ferrero, Sally Wheatley, Max E. Douglas, Masanori Mishima, Pier Paolo D’Avino
Nat Commun. 2019; 10: 4513. Published online 2019 Oct 4. doi: 10.1038/s41467-019-12507-9
PMCID:
PMC6778137
AbstractArticlePDF–7.8M
4.
Heterozygous deletion of chromosome 17p renders prostate cancer vulnerable to inhibition of RNA polymerase II
Yujing Li, Yunhua Liu, Hanchen Xu, Guanglong Jiang, Kevin Van der Jeught, Yuanzhang Fang, Zhuolong Zhou, Lu Zhang, Michael Frieden, Lifei Wang, Zhenhua Luo, Milan Radovich, Bryan P. Schneider, Yibin Deng, Yunlong Liu, Kun Huang, Bin He, Jin Wang, Xiaoming He, Xinna Zhang, Guang Ji, Xiongbin Lu
Nat Commun. 2018; 9: 4394. Published online 2018 Oct 22. doi: 10.1038/s41467-018-06811-z
PMCID:
PMC6197287
AbstractArticlePDF–1.9M
5.
Architecture of the human interactome defines protein communities and disease networks
Edward L. Huttlin, Raphael J. Bruckner, Joao A. Paulo, Joe R. Cannon, Lily Ting, Kurt Baltier, Greg Colby, Fana Gebreab, Melanie P. Gygi, Hannah Parzen, John Szpyt, Stanley Tam, Gabriela Zarraga, Laura Pontano-Vaites, Sharan Swarup, Anne E. White, Devin K. Schweppe, Ramin Rad, Brian K. Erickson, Robert A. Obar, K.G. Guruharsha, Kejie Li, Spyros Artavanis-Tsakonas, Steven P. Gygi, J. Wade Harper
Nature. Author manuscript; available in PMC 2017 Nov 17.
Published in final edited form as: Nature. 2017 May 25; 545(7655): 505–509. Published online 2017 May 17. doi: 10.1038/nature22366
PMCID:
PMC5531611
AbstractArticlePDF–2.7M
6.
Human Antiviral Protein IFIX Suppresses Viral Gene Expression during Herpes Simplex Virus 1 (HSV-1) Infection and Is Counteracted by Virus-induced Proteasomal Degradation
Marni S. Crow, Ileana M. Cristea
Mol Cell Proteomics. 2017 Apr; 16(4 Suppl 1): S200–S214. Published online 2017 Jan 11. doi: 10.1074/mcp.M116.064741
PMCID:
PMC5393386
AbstractArticlePDF–2.6M
7.
The BioPlex Network: A Systematic Exploration of the Human Interactome
Edward L. Huttlin, Lily Ting, Raphael J. Bruckner, Fana Gebreab, Melanie P. Gygi, John Szpyt, Stanley Tam, Gabriela Zarraga, Greg Colby, Kurt Baltier, Rui Dong, Virginia Guarani, Laura Pontano Vaites, Alban Ordureau, Ramin Rad, Brian K. Erickson, Martin Wühr, Joel Chick, Bo Zhai, Deepak Kolippakkam, Julian Mintseris, Robert A. Obar, Tim Harris, Spyros Artavanis-Tsakonas, Mathew E. Sowa, Pietro DeCamilli, Joao A. Paulo, J. Wade Harper, Steven P. Gygi
Cell. Author manuscript; available in PMC 2016 Jul 16.
Published in final edited form as: Cell. 2015 Jul 16; 162(2): 425–440. doi: 10.1016/j.cell.2015.06.043
PMCID:
PMC4617211
AbstractArticlePDF–2.2M
8.
The functional interactome of PYHIN immune regulators reveals IFIX is a sensor of viral DNA
Benjamin A Diner, Tuo Li, Todd M Greco, Marni S Crow, John A Fuesler, Jennifer Wang, Ileana M Cristea
Mol Syst Biol. 2015 Feb; 11(2): 787. Published online 2015 Feb 9. doi: 10.15252/msb.20145808
PMCID:
PMC4358659
AbstractArticlePDF–3.6M
9.
Meta-analysis of Genome-wide Association Studies of Asthma In Ethnically Diverse North American Populations
Dara G. Torgerson, Elizabeth J. Ampleford, Grace Y. Chiu, W. James Gauderman, Christopher R. Gignoux, Penelope E. Graves, Blanca E. Himes, Albert M. Levin, Rasika A. Mathias, Dana B. Hancock, James W. Baurley, Celeste Eng, Debra A. Stern, Juan C. Celedón, Nicholas Rafaels, Daniel Capurso, David V. Conti, Lindsey A. Roth, Manuel Soto-Quiros, Alkis Togias, Xingnan Li, Rachel A. Myers, Isabelle Romieu, David J. Van Den Berg, Donglei Hu, Nadia N. Hansel, Ryan D. Hernandez, Elliott Israel, Muhammad T. Salam, Joshua Galanter, Pedro C. Avila, Lydiana Avila, Jose R. Rodriquez-Santana, Rocio Chapela, William Rodriguez-Cintron, Gregory B. Diette, N. Franklin Adkinson, Rebekah A. Abel, Kevin D. Ross, Min Shi, Mezbah U. Faruque, Georgia M. Dunston, Harold R. Watson, Vito J. Mantese, Serpil C. Ezurum, Liming Liang, Ingo Ruczinski, Jean G. Ford, Scott Huntsman, Kian Fan Chung, Hita Vora, Xia Li, William J. Calhoun, Mario Castro, Juan J. Sienra-Monge, Blanca del Rio-Navarro, Klaus A. Deichmann, Andrea Heinzmann, Sally E. Wenzel, William W. Busse, James E. Gern, Robert F. Lemanske, Terri H. Beaty, Eugene R. Bleecker, Benjamin A. Raby, Deborah A. Meyers, Stephanie J. London, Frank D. Gilliland, Esteban G. Burchard, Fernando D. Martinez, Scott T. Weiss, L. Keoki Williams, Kathleen C. Barnes, Carole Ober, Dan L. Nicolae
Nat Genet. Author manuscript; available in PMC 2012 Sep 18.
Published in final edited form as: Nat Genet. 2011 Sep; 43(9): 887–892. Published online 2011 Jul 31. doi: 10.1038/ng.888
PMCID:
PMC3445408
AbstractArticlePDF–346K
10.
Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium
Pascale Gaudet, Michael S. Livstone, Suzanna E. Lewis, Paul D. Thomas
Brief Bioinform. 2011 Sep; 12(5): 449–462. Published online 2011 Aug 27. doi: 10.1093/bib/bbr042
PMCID:
PMC3178059
AbstractArticlePDF–1.0M
11.
Personalized Smoking Cessation: Interactions between Nicotine Dose, Dependence and Quit-Success Genotype Score
Jed E Rose, Frédérique M Behm, Tomas Drgon, Catherine Johnson, George R Uhl
Mol Med. 2010 Jul-Aug; 16(7-8): 247–253. Published online 2010 Mar 17. doi: 10.2119/molmed.2009.00159
Correction in:
Mol Med. 2012; 18(1): 729.
PMCID:
PMC2896464
AbstractArticlePDF–2.4M
12.
Interferon-Inducible Protein IFIXα Inhibits Cell Invasion by Upregulating the Metastasis Suppressor Maspin
Hirohito Yamaguchi, Yi Ding, Jin-Fong Lee, Ming Zhang, Ashutosh Pal, William Bornmann, Duen-Hwa Yan, Mien-Chie Hung
Mol Carcinog. Author manuscript; available in PMC 2008 Dec 5.
Published in final edited form as: Mol Carcinog. 2008 Oct; 47(10): 739–743. doi: 10.1002/mc.20423
PMCID:
PMC2596649
AbstractArticlePDF–368K
13.
Interferon-Inducible Protein IFIXα1 Functions as a Negative Regulator of HDM2
Yi Ding, Jin-Fong Lee, Hua Lu, Mong-Hong Lee, Duen-Hwa Yan
Mol Cell Biol. 2006 Mar; 26(5): 1979–1996. doi: 10.1128/MCB.26.5.1979-1996.2006
PMCID:
PMC1430239
AbstractArticlePDF–805K
14.
Diversification of transcriptional modulation: Large-scale identification and characterization of putative alternative promoters of human genes
Kouichi Kimura, Ai Wakamatsu, Yutaka Suzuki, Toshio Ota, Tetsuo Nishikawa, Riu Yamashita, Jun-ichi Yamamoto, Mitsuo Sekine, Katsuki Tsuritani, Hiroyuki Wakaguri, Shizuko Ishii, Tomoyasu Sugiyama, Kaoru Saito, Yuko Isono, Ryotaro Irie, Norihiro Kushida, Takahiro Yoneyama, Rie Otsuka, Katsuhiro Kanda, Takahide Yokoi, Hiroshi Kondo, Masako Wagatsuma, Katsuji Murakawa, Shinichi Ishida, Tadashi Ishibashi, Asako Takahashi-Fujii, Tomoo Tanase, Keiichi Nagai, Hisashi Kikuchi, Kenta Nakai, Takao Isogai, Sumio Sugano
Genome Res. 2006 Jan; 16(1): 55–65. doi: 10.1101/gr.4039406
PMCID:
PMC1356129
AbstractArticlePDF–438K
15.
Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences
Mammalian Gene Collection (MGC) Program Team
Proc Natl Acad Sci U S A. 2002 Dec 24; 99(26): 16899–16903. Published online 2002 Dec 11. doi: 10.1073/pnas.242603899
PMCID:
PMC139241
AbstractArticlePDF–118K

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