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Items: 1 to 20 of 24

1.
The social and structural architecture of the yeast protein interactome
André C. Michaelis, Andreas-David Brunner, Maximilian Zwiebel, Florian Meier, Maximilian T. Strauss, Isabell Bludau, Matthias Mann
Nature. 2023; 624(7990): 192–200. Published online 2023 Nov 15. doi: 10.1038/s41586-023-06739-5
PMCID:
PMC10700138
AbstractArticlePDF–20M
2.
A synthetic genetic array screen for interactions with the RNA helicase DED1 during cell stress in budding yeast
Sara B Carey, Hannah M List, Ashwin Siby, Paolo Guerra, Timothy A Bolger
G3 (Bethesda) 2023 Jan; 13(1): jkac296. Published online 2022 Nov 21. doi: 10.1093/g3journal/jkac296
PMCID:
PMC9836348
AbstractArticlePDF–857K
3.
New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources
Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry
Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224
PMCID:
PMC9209811
AbstractArticlePDF–818K
4.
Dedicated chaperones coordinate co-translational regulation of ribosomal protein production with ribosome assembly to preserve proteostasis
Benjamin Pillet, Alfonso Méndez-Godoy, Guillaume Murat, Sébastien Favre, Michael Stumpe, Laurent Falquet, Dieter Kressler
eLife. 2022; 11: e74255. Published online 2022 Mar 31. doi: 10.7554/eLife.74255
PMCID:
PMC8970588
AbstractArticlePDF–5.6M
5.
Genome-Wide Mapping of Decay Factor–mRNA Interactions in Yeast Identifies Nutrient-Responsive Transcripts as Targets of the Deadenylase Ccr4
Jason E. Miller, Liye Zhang, Haoyang Jiang, Yunfei Li, B. Franklin Pugh, Joseph C. Reese
G3 (Bethesda) 2018 Jan; 8(1): 315–330. Published online 2017 Nov 20. doi: 10.1534/g3.117.300415
PMCID:
PMC5765359
AbstractArticlePDF–2.2M
6.
A global interaction network maps a wiring diagram of cellular function
Michael Costanzo, Benjamin VanderSluis, Elizabeth N. Koch, Anastasia Baryshnikova, Carles Pons, Guihong Tan, Wen Wang, Matej Usaj, Julia Hanchard, Susan D. Lee, Vicent Pelechano, Erin B. Styles, Maximilian Billmann, Jolanda van Leeuwen, Nydia van Dyk, Zhen-Yuan Lin, Elena Kuzmin, Justin Nelson, Jeff S. Piotrowski, Tharan Srikumar, Sondra Bahr, Yiqun Chen, Raamesh Deshpande, Christoph F. Kurat, Sheena C. Li, Zhijian Li, Mojca Mattiazzi Usaj, Hiroki Okada, Natasha Pascoe, Bryan-Joseph San Luis, Sara Sharifpoor, Emira Shuteriqi, Scott W. Simpkins, Jamie Snider, Harsha Garadi Suresh, Yizhao Tan, Hongwei Zhu, Noel Malod-Dognin, Vuk Janjic, Natasa Przulj, Olga G. Troyanskaya, Igor Stagljar, Tian Xia, Yoshikazu Ohya, Anne-Claude Gingras, Brian Raught, Michael Boutros, Lars M. Steinmetz, Claire L. Moore, Adam P. Rosebrock, Amy A. Caudy, Chad L. Myers, Brenda Andrews, Charles Boone
Science. Author manuscript; available in PMC 2017 Oct 30.
Published in final edited form as: Science. 2016 Sep 23; 353(6306): aaf1420. doi: 10.1126/science.aaf1420
PMCID:
PMC5661885
AbstractArticlePDF–2.6M
7.
The Genetic Landscape of a Cell
Michael Costanzo, Anastasia Baryshnikova, Jeremy Bellay, Yungil Kim, Eric D. Spear, Carolyn S. Sevier, Huiming Ding, Judice L.Y. Koh, Kiana Toufighi, Sara Mostafavi, Jeany Prinz, Robert P. St. Onge, Benjamin VanderSluis, Taras Makhnevych, Franco J. Vizeacoumar, Solmaz Alizadeh, Sondra Bahr, Renee L. Brost, Yiqun Chen, Murat Cokol, Raamesh Deshpande, Zhijian Li, Zhen-Yuan Lin, Wendy Liang, Michaela Marback, Jadine Paw, Bryan-Joseph San Luis, Ermira Shuteriqi, Amy Hin Yan Tong, Nydia van Dyk, Iain M. Wallace, Joseph A. Whitney, Matthew T. Weirauch, Guoqing Zhong, Hongwei Zhu, Walid A. Houry, Michael Brudno, Sasan Ragibizadeh, Balázs Papp, Csaba Pál, Frederick P. Roth, Guri Giaever, Corey Nislow, Olga G. Troyanskaya, Howard Bussey, Gary D. Bader, Anne-Claude Gingras, Quaid D. Morris, Philip M. Kim, Chris A. Kaiser, Chad L. Myers, Brenda J. Andrews, Charles Boone
Science. Author manuscript; available in PMC 2017 Sep 15.
Published in final edited form as: Science. 2010 Jan 22; 327(5964): 425–431. doi: 10.1126/science.1180823
PMCID:
PMC5600254
AbstractArticlePDF–2.4M
8.
A novel translational control mechanism involving RNA structures within coding sequences
Jennifer Jungfleisch, Danny D. Nedialkova, Ivan Dotu, Katherine E. Sloan, Neus Martinez-Bosch, Lukas Brüning, Emanuele Raineri, Pilar Navarro, Markus T. Bohnsack, Sebastian A. Leidel, Juana Díez
Genome Res. 2017 Jan; 27(1): 95–106. doi: 10.1101/gr.209015.116
Correction in:
Genome Res. 2017 Apr; 27(4): 663.
PMCID:
PMC5204348
AbstractArticlePDF–1.3M
9.
Prion-Associated Toxicity is Rescued by Elimination of Cotranslational Chaperones
Kathryn M. Keefer, Heather L. True
PLoS Genet. 2016 Nov; 12(11): e1006431. Published online 2016 Nov 9. doi: 10.1371/journal.pgen.1006431
PMCID:
PMC5102407
AbstractArticlePDF–2.4M
10.
Functional Dissection of the Nascent Polypeptide-Associated Complex in Saccharomyces cerevisiae
Ann-Kathrin Ott, Lisa Locher, Miriam Koch, Elke Deuerling
PLoS One. 2015; 10(11): e0143457. Published online 2015 Nov 30. doi: 10.1371/journal.pone.0143457
PMCID:
PMC4664479
AbstractArticlePDF–1.9M
11.
Analysis of the interplay of protein biogenesis factors at the ribosome exit site reveals new role for NAC
Yvonne Nyathi, Martin R. Pool
J Cell Biol. 2015 Jul 20; 210(2): 287–301. doi: 10.1083/jcb.201410086
PMCID:
PMC4508901
AbstractArticlePDF–2.3M
12.
Ccr4-Not Regulates RNA Polymerase I Transcription and Couples Nutrient Signaling to the Control of Ribosomal RNA Biogenesis
R. Nicholas Laribee, Amira Hosni-Ahmed, Jason J. Workman, Hongfeng Chen
PLoS Genet. 2015 Mar; 11(3): e1005113. Published online 2015 Mar 27. doi: 10.1371/journal.pgen.1005113
PMCID:
PMC4376722
AbstractArticlePDF–1.8M
13.
Principles of cotranslational ubiquitination and quality control at the ribosome
Stefanie Duttler, Sebastian Pechmann, Judith Frydman
Mol Cell. Author manuscript; available in PMC 2014 May 9.
Published in final edited form as: Mol Cell. 2013 May 9; 50(3): 10.1016/j.molcel.2013.03.010. Published online 2013 Apr 11. doi: 10.1016/j.molcel.2013.03.010
PMCID:
PMC3886275
AbstractArticlePDF–3.1M
14.
Global Analysis of Yeast mRNPs
Sarah F. Mitchell, Saumya Jain, Meipei She, Roy Parker
Nat Struct Mol Biol. Author manuscript; available in PMC 2013 Jul 1.
Published in final edited form as: Nat Struct Mol Biol. 2013 Jan; 20(1): 127–133. Published online 2012 Dec 9. doi: 10.1038/nsmb.2468
PMCID:
PMC3537908
AbstractArticlePDF–1.2M
15.
Coiled-coil networking shapes cell molecular machinery
Yongqiang Wang, Xinlei Zhang, Hong Zhang, Yi Lu, Haolong Huang, Xiaoxi Dong, Jinan Chen, Jiuhong Dong, Xiao Yang, Haiying Hang, Taijiao Jiang
Mol Biol Cell. 2012 Oct 1; 23(19): 3911–3922. doi: 10.1091/mbc.E12-05-0396
PMCID:
PMC3459866
AbstractArticlePDF–7.0M
16.
The CCR4-NOT Complex Is Implicated in the Viability of Aneuploid Yeasts
Yoshie Tange, Atsushi Kurabayashi, Bunshiro Goto, Kwang-Lae Hoe, Dong-Uk Kim, Han-Oh Park, Jacqueline Hayles, Yuji Chikashige, Chihiro Tsutumi, Yasushi Hiraoka, Fumiaki Yamao, Paul Nurse, Osami Niwa
PLoS Genet. 2012 Jun; 8(6): e1002776. Published online 2012 Jun 21. doi: 10.1371/journal.pgen.1002776
PMCID:
PMC3380822
AbstractArticlePDF–7.7M
17.
Functional wiring of the yeast kinome revealed by global analysis of genetic network motifs
Sara Sharifpoor, Dewald van Dyk, Michael Costanzo, Anastasia Baryshnikova, Helena Friesen, Alison C. Douglas, Ji-Young Youn, Benjamin VanderSluis, Chad L. Myers, Balázs Papp, Charles Boone, Brenda J. Andrews
Genome Res. 2012 Apr; 22(4): 791–801. doi: 10.1101/gr.129213.111
PMCID:
PMC3317160
AbstractArticlePDF–998K
18.
Defining the Specificity of Cotranslationally Acting Chaperones by Systematic Analysis of mRNAs Associated with Ribosome-Nascent Chain Complexes
Marta del Alamo, Daniel J. Hogan, Sebastian Pechmann, Veronique Albanese, Patrick O. Brown, Judith Frydman
PLoS Biol. 2011 Jul; 9(7): e1001100. Published online 2011 Jul 12. doi: 10.1371/journal.pbio.1001100
PMCID:
PMC3134442
AbstractArticlePDF–3.7M
19.
A dual function for chaperones SSB–RAC and the NAC nascent polypeptide–associated complex on ribosomes
Ansgar Koplin, Steffen Preissler, Yulia Ilina, Miriam Koch, Annika Scior, Marc Erhardt, Elke Deuerling
J Cell Biol. 2010 Apr 5; 189(1): 57–68. doi: 10.1083/jcb.200910074
PMCID:
PMC2854369
AbstractArticlePDF–2.8M
20.
Integrating high-throughput genetic interaction mapping and high-content screening to explore yeast spindle morphogenesis
Franco J. Vizeacoumar, Nydia van Dyk, Frederick S.Vizeacoumar, Vincent Cheung, Jingjing Li, Yaroslav Sydorskyy, Nicolle Case, Zhijian Li, Alessandro Datti, Corey Nislow, Brian Raught, Zhaolei Zhang, Brendan Frey, Kerry Bloom, Charles Boone, Brenda J. Andrews
J Cell Biol. 2010 Jan 11; 188(1): 69–81. doi: 10.1083/jcb.200909013
PMCID:
PMC2812844
AbstractArticlePDF–3.9M

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