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Items: 1 to 20 of 34

1.
Protein interaction network revealed by quantitative proteomic analysis links TFIIB to multiple aspects of the transcription cycle
Michael J. O’Brien, Athar Ansari
Biochim Biophys Acta Proteins Proteom. Author manuscript; available in PMC 2024 Feb 16.
Published in final edited form as: Biochim Biophys Acta Proteins Proteom. 2024 Jan 1; 1872(1): 140968. Published online 2023 Oct 19. doi: 10.1016/j.bbapap.2023.140968
PMCID:
PMC10872477
AbstractArticlePDF–1.7M
2.
Adaptive preservation of orphan ribosomal proteins in chaperone-dispersed condensates
Asif Ali, Rania Garde, Olivia C. Schaffer, Jared A. M. Bard, Kabir Husain, Samantha Keyport Kik, Kathleen A. Davis, Sofia Luengo-Woods, Maya G. Igarashi, D. Allan Drummond, Allison H. Squires, David Pincus
Nat Cell Biol. Author manuscript; available in PMC 2024 Feb 15.
Published in final edited form as: Nat Cell Biol. 2023 Nov; 25(11): 1691–1703. Published online 2023 Oct 16. doi: 10.1038/s41556-023-01253-2
PMCID:
PMC10868727
AbstractArticlePDF–7.0M
3.
The social and structural architecture of the yeast protein interactome
André C. Michaelis, Andreas-David Brunner, Maximilian Zwiebel, Florian Meier, Maximilian T. Strauss, Isabell Bludau, Matthias Mann
Nature. 2023; 624(7990): 192–200. Published online 2023 Nov 15. doi: 10.1038/s41586-023-06739-5
PMCID:
PMC10700138
AbstractArticlePDF–20M
4.
New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources
Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry
Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224
PMCID:
PMC9209811
AbstractArticlePDF–818K
5.
The histone chaperone Spt6 is required for normal recruitment of the capping enzyme Abd1 to transcribed regions
Rajaraman Gopalakrishnan, Fred Winston
J Biol Chem. 2021 Oct; 297(4): 101205. Published online 2021 Sep 17. doi: 10.1016/j.jbc.2021.101205
PMCID:
PMC8511950
AbstractArticlePDF–3.1M
6.
Systematic analysis of bypass suppression of essential genes
Jolanda van Leeuwen, Carles Pons, Guihong Tan, Jason Zi Wang, Jing Hou, Jochen Weile, Marinella Gebbia, Wendy Liang, Ermira Shuteriqi, Zhijian Li, Maykel Lopes, Matej Ušaj, Andreia Dos Santos Lopes, Natascha van Lieshout, Chad L Myers, Frederick P Roth, Patrick Aloy, Brenda J Andrews, Charles Boone
Mol Syst Biol. 2020 Sep; 16(9): e9828. Published online 2020 Sep 17. doi: 10.15252/msb.20209828
PMCID:
PMC7507402
AbstractArticlePDF–1.8M
7.
Distinct adaptive mechanisms drive recovery from aneuploidy caused by loss of the Ulp2 SUMO protease
Hong-Yeoul Ryu, Francesc López-Giráldez, James Knight, Soo Seok Hwang, Christina Renner, Stefan G. Kreft, Mark Hochstrasser
Nat Commun. 2018; 9: 5417. Published online 2018 Dec 21. doi: 10.1038/s41467-018-07836-0
PMCID:
PMC6303320
AbstractArticlePDF–3.3M
8.
The cellular economy of the Saccharomyces cerevisiae zinc proteome
Yirong Wang, Erin Weisenhorn, Colin MacDiarmid, Claudia Andreini, Michael Bucci, Janet Taggart, Lucia Banci, Jason Russell, Joshua J. Coon, David J. Eide
Metallomics. Author manuscript; available in PMC 2019 Dec 12.
Published in final edited form as: Metallomics. 2018 Dec 12; 10(12): 1755–1776. doi: 10.1039/c8mt00269j
PMCID:
PMC6291366
AbstractArticlePDF–3.0M
9.
Defective RNA polymerase III is negatively regulated by the SUMO-Ubiquitin-Cdc48 pathway
Zheng Wang, Catherine Wu, Aaron Aslanian, John R Yates, III, Tony Hunter
eLife. 2018; 7: e35447. Published online 2018 Sep 7. doi: 10.7554/eLife.35447
PMCID:
PMC6128692
AbstractArticlePDF–6.9M
10.
Genome-Wide Mapping of Decay Factor–mRNA Interactions in Yeast Identifies Nutrient-Responsive Transcripts as Targets of the Deadenylase Ccr4
Jason E. Miller, Liye Zhang, Haoyang Jiang, Yunfei Li, B. Franklin Pugh, Joseph C. Reese
G3 (Bethesda) 2018 Jan; 8(1): 315–330. Published online 2017 Nov 20. doi: 10.1534/g3.117.300415
PMCID:
PMC5765359
AbstractArticlePDF–2.2M
11.
Mapping the Synthetic Dosage Lethality Network of CDK1/CDC28
Christine Zimmermann, Ignacio Garcia, Manja Omerzu, Pierre Chymkowitch, Beibei Zhang, Jorrit M. Enserink
G3 (Bethesda) 2017 Jun; 7(6): 1753–1766. Published online 2017 Apr 18. doi: 10.1534/g3.117.042317
Correction in:
G3 (Bethesda). 2019 Aug; 9(8): 2787.
PMCID:
PMC5473755
AbstractArticlePDF–2.7M
12.
A genetic screen in combination with biochemical analysis in Saccharomyces cerevisiae indicates that phenazine-1-carboxylic acid is harmful to vesicular trafficking and autophagy
Xiaolong Zhu, Yan Zeng, Xiu Zhao, Shenshen Zou, Ya-Wen He, Yongheng Liang
Sci Rep. 2017; 7: 1967. Published online 2017 May 16. doi: 10.1038/s41598-017-01452-6
PMCID:
PMC5434042
AbstractArticlePDF–4.2M
13.
Linkage via K27 bestows ubiquitin chains with unique properties among polyubiquitins
Carlos A. Castañeda, Emma K. Dixon, Olivier Walker, Apurva Chaturvedi, Mark A. Nakasone, Joseph E. Curtis, Megan R. Reed, Susan Krueger, T. Ashton Cropp, David Fushman
Structure. Author manuscript; available in PMC 2017 Mar 1.
Published in final edited form as: Structure. 2016 Mar 1; 24(3): 423–436. Published online 2016 Feb 11. doi: 10.1016/j.str.2016.01.007
PMCID:
PMC4787624
AbstractArticlePDF–2.2M
14.
A Chemical and Enzymatic Approach to Study Site-Specific Sumoylation
Claudio P. Albuquerque, Eyan Yeung, Shawn Ma, Ting Fu, Kevin D. Corbett, Huilin Zhou
PLoS One. 2015; 10(12): e0143810. Published online 2015 Dec 3. doi: 10.1371/journal.pone.0143810
PMCID:
PMC4669148
AbstractArticlePDF–2.1M
15.
Physical and Genetic Interactions Between Uls1 and the Slx5–Slx8 SUMO-Targeted Ubiquitin Ligase
Wei Tan, Zheng Wang, Gregory Prelich
G3 (Bethesda) 2013 Apr; 3(4): 771–780. Published online 2013 Apr 1. doi: 10.1534/g3.113.005827
PMCID:
PMC3618364
AbstractArticlePDF–1.5M
16.
Genome-wide bimolecular fluorescence complementation analysis of SUMO interactome in yeast
Min-Kyung Sung, Gyubum Lim, Dae-Gwan Yi, Yeon Ji Chang, Eun Bin Yang, KiYoung Lee, Won-Ki Huh
Genome Res. 2013 Apr; 23(4): 736–746. doi: 10.1101/gr.148346.112
PMCID:
PMC3613590
AbstractArticlePDF–1.7M
17.
Saccharomyces cerevisiae Genetics Predicts Candidate Therapeutic Genetic Interactions at the Mammalian Replication Fork
Derek M. van Pel, Peter C. Stirling, Sean W. Minaker, Payal Sipahimalani, Philip Hieter
G3 (Bethesda) 2013 Feb; 3(2): 273–282. Published online 2013 Feb 1. doi: 10.1534/g3.112.004754
PMCID:
PMC3564987
AbstractArticlePDF–2.3M
18.
The cotranslational function of ribosome-associated Hsp70 in eukaryotic protein homeostasis
Felix Willmund, Marta del Alamo, Sebastian Pechmann, Taotao Chen, Veronique Albanese, Eric B. Dammer, Junmin Peng, Judith Frydman
Cell. Author manuscript; available in PMC 2014 Jan 17.
Published in final edited form as: Cell. 2013 Jan 17; 152(1-2): 196–209. doi: 10.1016/j.cell.2012.12.001
PMCID:
PMC3553497
AbstractArticlePDF–5.1M
19.
Recognition and Cleavage of Related to Ubiquitin 1 (Rub1) and Rub1-Ubiquitin Chains by Components of the Ubiquitin-Proteasome System
Rajesh K. Singh, Sylvia Zerath, Oded Kleifeld, Martin Scheffner, Michael H. Glickman, David Fushman
Mol Cell Proteomics. 2012 Dec; 11(12): 1595–1611. Published online 2012 Oct 26. doi: 10.1074/mcp.M112.022467
PMCID:
PMC3518131
AbstractArticlePDF–2.9M
20.
Sumoylation regulates Kap114-mediated nuclear transport
Ute Rothenbusch, Marc Sawatzki, Yiming Chang, Stefanie Caesar, Gabriel Schlenstedt
EMBO J. 2012 May 30; 31(11): 2461–2472. Published online 2012 May 4. doi: 10.1038/emboj.2012.102
PMCID:
PMC3365415
AbstractArticlePDF–1.3M

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