PMC Links for GEO Profiles (Select 1574375) - PMC

Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry

Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224

PMCID:: PMC9209811

Abstract Article PDF–818K

Select item 77187514.

Comprehensive Synthetic Genetic Array Analysis of Alleles That Interact with Mutation of the Saccharomyces cerevisiae RecQ Helicases Hrq1 and Sgs1

Elsbeth Sanders, Phoebe A. Nguyen, Cody M. Rogers, Matthew L. Bochman

G3 (Bethesda) 2020 Dec; 10(12): 4359–4368. Published online 2020 Oct 28. doi: 10.1534/g3.120.401709

PMCID:: PMC7718751

Abstract Article PDF–1.2M

Select item 73671885.

Misactivation of multiple starvation responses in yeast by loss of tRNA modifications

Alexander Bruch, Teresa Laguna, Falk Butter, Raffael Schaffrath, Roland Klassen

Nucleic Acids Res. 2020 Jul 27; 48(13): 7307–7320. Published online 2020 Jun 2. doi: 10.1093/nar/gkaa455

PMCID:: PMC7367188

Abstract Article PDF–3.8M

Select item 71244666.

Improving Identification of In-organello Protein-Protein Interactions Using an Affinity-enrichable, Isotopically Coded, and Mass Spectrometry-cleavable Chemical Crosslinker

Karl A. T. Makepeace, Yassene Mohammed, Elena L. Rudashevskaya, Evgeniy V. Petrotchenko, F.-Nora Vögtle, Chris Meisinger, Albert Sickmann, Christoph H. Borchers

Mol Cell Proteomics. 2020 Apr; 19(4): 624–639. Published online 2020 Feb 12. doi: 10.1074/mcp.RA119.001839

PMCID:: PMC7124466

Abstract Article PDF–7.8M

Select item 68113987.

Decyl Gallate as a Possible Inhibitor of N-Glycosylation Process in Paracoccidioides lutzii

Ana Carolina Alves de Paula e Silva, Haroldo Cesar de Oliveira, Liliana Scorzoni, Caroline Maria Marcos, Claudia Tavares dos Santos, Ana Marisa Fusco-Almeida, Ana Carolina Guerta Salina, Alexandra Ivo Medeiros, Fausto Almeida, Sheena Claire Li, Charles Boone, Maria J. S. Mendes-Giannini

Antimicrob Agents Chemother. 2019 Nov; 63(11): e01909-18. Prepublished online 2019 Aug 26. Published online 2019 Oct 22. doi: 10.1128/AAC.01909-18

PMCID:: PMC6811398

Abstract Article PDF–1.0M

Select item 62157138.

Systematic Analysis of Complex Genetic Interactions

Elena Kuzmin, Benjamin VanderSluis, Wen Wang, Guihong Tan, Raamesh Deshpande, Yiqun Chen, Matej Usaj, Attila Balint, Mojca Mattiazzi Usaj, Jolanda van Leeuwen, Elizabeth N. Koch, Carles Pons, Andrius J. Dagilis, Michael Pryszlak, Jason Zi Yang Wang, Julia Hanchard, Margot Riggi, Kaicong Xu, Hamed Heydari, Bryan-Joseph San Luis, Ermira Shuteriqi, Hongwei Zhu, Nydia Van Dyk, Sara Sharifpoor, Michael Costanzo, Robbie Loewith, Amy Caudy, Daniel Bolnick, Grant W. Brown, Brenda J. Andrews, Charles Boone, Chad L. Myers

Science. Author manuscript; available in PMC 2018 Nov 4.

Published in final edited form as: Science. 2018 Apr 20; 360(6386): eaao1729. doi: 10.1126/science.aao1729

PMCID:: PMC6215713

Abstract Article PDF–1.9M

Select item 61091249.

Collaboration of tRNA modifications and elongation factor eEF1A in decoding and nonsense suppression

Roland Klassen, Raffael Schaffrath

Sci Rep. 2018; 8: 12749. Published online 2018 Aug 24. doi: 10.1038/s41598-018-31158-2

PMCID:: PMC6109124

Abstract Article PDF–5.8M

Select item 576535910.

Genome-Wide Mapping of Decay Factor–mRNA Interactions in Yeast Identifies Nutrient-Responsive Transcripts as Targets of the Deadenylase Ccr4

Jason E. Miller, Liye Zhang, Haoyang Jiang, Yunfei Li, B. Franklin Pugh, Joseph C. Reese

G3 (Bethesda) 2018 Jan; 8(1): 315–330. Published online 2017 Nov 20. doi: 10.1534/g3.117.300415

PMCID:: PMC5765359

Abstract Article PDF–2.2M

Select item 566188511.

A global interaction network maps a wiring diagram of cellular function

Michael Costanzo, Benjamin VanderSluis, Elizabeth N. Koch, Anastasia Baryshnikova, Carles Pons, Guihong Tan, Wen Wang, Matej Usaj, Julia Hanchard, Susan D. Lee, Vicent Pelechano, Erin B. Styles, Maximilian Billmann, Jolanda van Leeuwen, Nydia van Dyk, Zhen-Yuan Lin, Elena Kuzmin, Justin Nelson, Jeff S. Piotrowski, Tharan Srikumar, Sondra Bahr, Yiqun Chen, Raamesh Deshpande, Christoph F. Kurat, Sheena C. Li, Zhijian Li, Mojca Mattiazzi Usaj, Hiroki Okada, Natasha Pascoe, Bryan-Joseph San Luis, Sara Sharifpoor, Emira Shuteriqi, Scott W. Simpkins, Jamie Snider, Harsha Garadi Suresh, Yizhao Tan, Hongwei Zhu, Noel Malod-Dognin, Vuk Janjic, Natasa Przulj, Olga G. Troyanskaya, Igor Stagljar, Tian Xia, Yoshikazu Ohya, Anne-Claude Gingras, Brian Raught, Michael Boutros, Lars M. Steinmetz, Claire L. Moore, Adam P. Rosebrock, Amy A. Caudy, Chad L. Myers, Brenda Andrews, Charles Boone

Science. Author manuscript; available in PMC 2017 Oct 30.

Published in final edited form as: Science. 2016 Sep 23; 353(6306): aaf1420. doi: 10.1126/science.aaf1420

PMCID:: PMC5661885

Abstract Article PDF–2.6M

Select item 560025412.

The Genetic Landscape of a Cell

Michael Costanzo, Anastasia Baryshnikova, Jeremy Bellay, Yungil Kim, Eric D. Spear, Carolyn S. Sevier, Huiming Ding, Judice L.Y. Koh, Kiana Toufighi, Sara Mostafavi, Jeany Prinz, Robert P. St. Onge, Benjamin VanderSluis, Taras Makhnevych, Franco J. Vizeacoumar, Solmaz Alizadeh, Sondra Bahr, Renee L. Brost, Yiqun Chen, Murat Cokol, Raamesh Deshpande, Zhijian Li, Zhen-Yuan Lin, Wendy Liang, Michaela Marback, Jadine Paw, Bryan-Joseph San Luis, Ermira Shuteriqi, Amy Hin Yan Tong, Nydia van Dyk, Iain M. Wallace, Joseph A. Whitney, Matthew T. Weirauch, Guoqing Zhong, Hongwei Zhu, Walid A. Houry, Michael Brudno, Sasan Ragibizadeh, Balázs Papp, Csaba Pál, Frederick P. Roth, Guri Giaever, Corey Nislow, Olga G. Troyanskaya, Howard Bussey, Gary D. Bader, Anne-Claude Gingras, Quaid D. Morris, Philip M. Kim, Chris A. Kaiser, Chad L. Myers, Brenda J. Andrews, Charles Boone

Science. Author manuscript; available in PMC 2017 Sep 15.

Published in final edited form as: Science. 2010 Jan 22; 327(5964): 425–431. doi: 10.1126/science.1180823

PMCID:: PMC5600254

Abstract Article PDF–2.4M

Select item 520434813.

A novel translational control mechanism involving RNA structures within coding sequences

Jennifer Jungfleisch, Danny D. Nedialkova, Ivan Dotu, Katherine E. Sloan, Neus Martinez-Bosch, Lukas Brüning, Emanuele Raineri, Pilar Navarro, Markus T. Bohnsack, Sebastian A. Leidel, Juana Díez

Genome Res. 2017 Jan; 27(1): 95–106. doi: 10.1101/gr.209015.116

Correction in:: Genome Res. 2017 Apr; 27(4): 663.

PMCID:: PMC5204348

Abstract Article PDF–1.3M

Select item 515952914.

tRNA anticodon loop modifications ensure protein homeostasis and cell morphogenesis in yeast

Roland Klassen, Akif Ciftci, Johanna Funk, Alexander Bruch, Falk Butter, Raffael Schaffrath

Nucleic Acids Res. 2016 Dec 15; 44(22): 10946–10959. Published online 2016 Aug 5. doi: 10.1093/nar/gkw705

PMCID:: PMC5159529

Abstract Article PDF–9.1M

Select item 487517815.

Interactomic study on interaction between lipid droplets and mitochondria

Jing Pu, Cheol Woong Ha, Shuyan Zhang, Jong Pil Jung, Won-Ki Huh, Pingsheng Liu

Protein Cell. 2011 Jun; 2(6): 487–496. Published online 2011 Jul 12. doi: 10.1007/s13238-011-1061-y

PMCID:: PMC4875178

Abstract Article PDF–1.5M

Select item 484875816.

An inter‐species protein–protein interaction network across vast evolutionary distance

Quan Zhong, Samuel J Pevzner, Tong Hao, Yang Wang, Roberto Mosca, Jörg Menche, Mikko Taipale, Murat Taşan, Changyu Fan, Xinping Yang, Patrick Haley, Ryan R Murray, Flora Mer, Fana Gebreab, Stanley Tam, Andrew MacWilliams, Amélie Dricot, Patrick Reichert, Balaji Santhanam, Lila Ghamsari, Michael A Calderwood, Thomas Rolland, Benoit Charloteaux, Susan Lindquist, Albert‐László Barabási, David E Hill, Patrick Aloy, Michael E Cusick, Yu Xia, Frederick P Roth, Marc Vidal

Mol Syst Biol. 2016 Apr; 12(4): 865. Published online 2016 Apr 23. doi: 10.15252/msb.20156484

PMCID:: PMC4848758

Abstract Article PDF–2.1M

Select item 433131117.

A haploproficient interaction of the transaldolase paralogue NQM1 with the transcription factor VHR1 affects stationary phase survival and oxidative stress resistance

Steve Michel, Markus A Keller, Mirjam MC Wamelink, Markus Ralser

BMC Genet. 2015; 16: 13. Published online 2015 Feb 11. doi: 10.1186/s12863-015-0171-6

PMCID:: PMC4331311

Abstract Article PDF–2.0M

Select item 319815618.

A mitochondrial-focused genetic interaction map reveals a scaffold-like complex required for inner membrane organization in mitochondria

Suzanne Hoppins, Sean R. Collins, Ann Cassidy-Stone, Eric Hummel, Rachel M. DeVay, Laura L. Lackner, Benedikt Westermann, Maya Schuldiner, Jonathan S. Weissman, Jodi Nunnari

J Cell Biol. 2011 Oct 17; 195(2): 323–340. doi: 10.1083/jcb.201107053

PMCID:: PMC3198156

Abstract Article PDF–4.1M

Select item 290335519.

J Domain Co-chaperone Specificity Defines the Role of BiP during Protein Translocation

Shruthi S. Vembar, Martin C. Jonikas, Linda M. Hendershot, Jonathan S. Weissman, Jeffrey L. Brodsky

J Biol Chem. 2010 Jul 16; 285(29): 22484–22494. Published online 2010 Apr 29. doi: 10.1074/jbc.M110.102186

PMCID:: PMC2903355

Abstract Article PDF–1.9M

Select item 287748820.

Comprehensive characterization of genes required for protein folding in the endoplasmic reticulum

Martin C. Jonikas, Sean R. Collins, Vladimir Denic, Eugene Oh, Erin M. Quan, Volker Schmid, Jimena Weibezahn, Blanche Schwappach, Peter Walter, Jonathan S. Weissman, Maya Schuldiner

Science. Author manuscript; available in PMC 2010 May 27.

Published in final edited form as: Science. 2009 Mar 27; 323(5922): 1693–1697. doi: 10.1126/science.1167983

PMCID:: PMC2877488

Abstract Article PDF–2.1M

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