PMC Links for GEO Profiles (Select 1575151) - PMC

Select item 92098111.

New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources

Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry

Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224

PMCID:: PMC9209811

Abstract Article PDF–818K

Select item 56618852.

A global interaction network maps a wiring diagram of cellular function

Michael Costanzo, Benjamin VanderSluis, Elizabeth N. Koch, Anastasia Baryshnikova, Carles Pons, Guihong Tan, Wen Wang, Matej Usaj, Julia Hanchard, Susan D. Lee, Vicent Pelechano, Erin B. Styles, Maximilian Billmann, Jolanda van Leeuwen, Nydia van Dyk, Zhen-Yuan Lin, Elena Kuzmin, Justin Nelson, Jeff S. Piotrowski, Tharan Srikumar, Sondra Bahr, Yiqun Chen, Raamesh Deshpande, Christoph F. Kurat, Sheena C. Li, Zhijian Li, Mojca Mattiazzi Usaj, Hiroki Okada, Natasha Pascoe, Bryan-Joseph San Luis, Sara Sharifpoor, Emira Shuteriqi, Scott W. Simpkins, Jamie Snider, Harsha Garadi Suresh, Yizhao Tan, Hongwei Zhu, Noel Malod-Dognin, Vuk Janjic, Natasa Przulj, Olga G. Troyanskaya, Igor Stagljar, Tian Xia, Yoshikazu Ohya, Anne-Claude Gingras, Brian Raught, Michael Boutros, Lars M. Steinmetz, Claire L. Moore, Adam P. Rosebrock, Amy A. Caudy, Chad L. Myers, Brenda Andrews, Charles Boone

Science. Author manuscript; available in PMC 2017 Oct 30.

Published in final edited form as: Science. 2016 Sep 23; 353(6306): aaf1420. doi: 10.1126/science.aaf1420

PMCID:: PMC5661885

Abstract Article PDF–2.6M

Select item 56002543.

The Genetic Landscape of a Cell

Michael Costanzo, Anastasia Baryshnikova, Jeremy Bellay, Yungil Kim, Eric D. Spear, Carolyn S. Sevier, Huiming Ding, Judice L.Y. Koh, Kiana Toufighi, Sara Mostafavi, Jeany Prinz, Robert P. St. Onge, Benjamin VanderSluis, Taras Makhnevych, Franco J. Vizeacoumar, Solmaz Alizadeh, Sondra Bahr, Renee L. Brost, Yiqun Chen, Murat Cokol, Raamesh Deshpande, Zhijian Li, Zhen-Yuan Lin, Wendy Liang, Michaela Marback, Jadine Paw, Bryan-Joseph San Luis, Ermira Shuteriqi, Amy Hin Yan Tong, Nydia van Dyk, Iain M. Wallace, Joseph A. Whitney, Matthew T. Weirauch, Guoqing Zhong, Hongwei Zhu, Walid A. Houry, Michael Brudno, Sasan Ragibizadeh, Balázs Papp, Csaba Pál, Frederick P. Roth, Guri Giaever, Corey Nislow, Olga G. Troyanskaya, Howard Bussey, Gary D. Bader, Anne-Claude Gingras, Quaid D. Morris, Philip M. Kim, Chris A. Kaiser, Chad L. Myers, Brenda J. Andrews, Charles Boone

Science. Author manuscript; available in PMC 2017 Sep 15.

Published in final edited form as: Science. 2010 Jan 22; 327(5964): 425–431. doi: 10.1126/science.1180823

PMCID:: PMC5600254

Abstract Article PDF–2.4M

Select item 53892884.

Comprehensive and quantitative mapping of RNA–protein interactions across a transcribed eukaryotic genome

Richard She, Anupam K. Chakravarty, Curtis J. Layton, Lauren M. Chircus, Johan O. L. Andreasson, Nandita Damaraju, Peter L. McMahon, Jason D. Buenrostro, Daniel F. Jarosz, William J. Greenleaf

Proc Natl Acad Sci U S A. 2017 Apr 4; 114(14): 3619–3624. Published online 2017 Mar 21. doi: 10.1073/pnas.1618370114

PMCID:: PMC5389288

Abstract Article PDF–1.3M

Select item 48698355.

One library to make them all: Streamlining yeast library creation by a SWAp-Tag (SWAT) strategy

Ido Yofe, Uri Weill, Matthias Meurer, Silvia Chuartzman, Einat Zalckvar, Omer Goldman, Shifra Ben-Dor, Conny Schütze, Nils Wiedemann, Michael Knop, Anton Khmelinskii, Maya Schuldiner

Nat Methods. Author manuscript; available in PMC 2016 Sep 22.

Published in final edited form as: Nat Methods. 2016 Apr; 13(4): 371–378. Published online 2016 Feb 29. doi: 10.1038/nmeth.3795

PMCID:: PMC4869835

Abstract Article PDF–2.7M

Select item 37913126.

A Lipid E-MAP Identifies Ubx2 as a Critical Regulator of Lipid Saturation and Lipid Bilayer Stress

Michal A. Surma, Christian Klose, Debby Peng, Michael Shales, Caroline Mrejen, Adam Stefanko, Hannes Braberg, David E. Gordon, Daniela Vorkel, Christer S. Ejsing, Robert Farese, Jr., Kai Simons, Nevan J. Krogan, Robert Ernst

Mol Cell. Author manuscript; available in PMC 2014 Aug 22.

Published in final edited form as: Mol Cell. 2013 Aug 22; 51(4): 519–530. Published online 2013 Jul 25. doi: 10.1016/j.molcel.2013.06.014

PMCID:: PMC3791312

Abstract Article PDF–1.9M

Select item 36004647.

H3K4 methyltransferase Set1 is involved in maintenance of ergosterol homeostasis and resistance to Brefeldin A

Paul F. South, Kayla M. Harmeyer, Nina D. Serratore, Scott D. Briggs

Proc Natl Acad Sci U S A. 2013 Mar 12; 110(11): E1016–E1025. Published online 2013 Feb 4. doi: 10.1073/pnas.1215768110

PMCID:: PMC3600464

Abstract Article PDF–1.1M

Select item 35649878.

Saccharomyces cerevisiae Genetics Predicts Candidate Therapeutic Genetic Interactions at the Mammalian Replication Fork

Derek M. van Pel, Peter C. Stirling, Sean W. Minaker, Payal Sipahimalani, Philip Hieter

G3 (Bethesda) 2013 Feb; 3(2): 273–282. Published online 2013 Feb 1. doi: 10.1534/g3.112.004754

PMCID:: PMC3564987

Abstract Article PDF–2.3M

Select item 33171609.

Functional wiring of the yeast kinome revealed by global analysis of genetic network motifs

Sara Sharifpoor, Dewald van Dyk, Michael Costanzo, Anastasia Baryshnikova, Helena Friesen, Alison C. Douglas, Ji-Young Youn, Benjamin VanderSluis, Chad L. Myers, Balázs Papp, Charles Boone, Brenda J. Andrews

Genome Res. 2012 Apr; 22(4): 791–801. doi: 10.1101/gr.129213.111

PMCID:: PMC3317160

Abstract Article PDF–998K

Select item 292678810.

Evolutionary divergence in the fungal response to fluconazole revealed by soft clustering

Dwight Kuo, Kai Tan, Guy Zinman, Timothy Ravasi, Ziv Bar-Joseph, Trey Ideker

Genome Biol. 2010; 11(7): R77. Published online 2010 Jul 23. doi: 10.1186/gb-2010-11-7-r77

PMCID:: PMC2926788

Abstract Article PDF–1.9M

Select item 217453111.

Yeast Screens Identify the RNA Polymerase II CTD and SPT5 as Relevant Targets of BRCA1 Interaction

Craig B. Bennett, Tammy J. Westmoreland, Carmel S. Verrier, Carrie A. B. Blanchette, Tiffany L. Sabin, Hemali P. Phatnani, Yuliya V. Mishina, Gudrun Huper, Alice L. Selim, Ernest R. Madison, Dominique D. Bailey, Adebola I. Falae, Alvaro Galli, John A. Olson, Jr, Arno L. Greenleaf, Jeffrey R. Marks

PLoS One. 2008; 3(1): e1448. Published online 2008 Jan 16. doi: 10.1371/journal.pone.0001448

PMCID:: PMC2174531

Abstract Article PDF–1.0M

Select item 182048612.

Direct Role for the Rpd3 Complex in Transcriptional Induction of the Anaerobic DAN/TIR Genes in Yeast

Odeniel Sertil, Arvind Vemula, Sharon L. Salmon, Randall H. Morse, Charles V. Lowry

Mol Cell Biol. 2007 Mar; 27(6): 2037–2047. Published online 2007 Jan 8. doi: 10.1128/MCB.02297-06

PMCID:: PMC1820486

Abstract Article PDF–504K

Select item 113377713.

SUT1-promoted sterol uptake involves the ABC transporter Aus1 and the mannoprotein Dan1 whose synergistic action is sufficient for this process

Parissa Alimardani, Matthieu RéGNACQ, Carole Moreau-Vauzelle, Thierry Ferreira, Tristan Rossignol, Bruno Blondin, Thierry BERGèS

Biochem J. 2004 Jul 1; 381(Pt 1): 195–202. Prepublished online 2004 Mar 22. Published online 2004 Jun 22. doi: 10.1042/BJ20040297

PMCID:: PMC1133777

Abstract Article PDF–402K

Select item 45012514.

Complete nucleotide sequence of Saccharomyces cerevisiae chromosome X.

F Galibert, D Alexandraki, A Baur, E Boles, N Chalwatzis, J C Chuat, F Coster, C Cziepluch, M De Haan, H Domdey, P Durand, K D Entian, M Gatius, A Goffeau, L A Grivell, A Hennemann, C J Herbert, K Heumann, F Hilger, C P Hollenberg, M E Huang, C Jacq, J C Jauniaux, C Katsoulou, L Karpfinger-Hartl, et al.

EMBO J. 1996 May 1; 15(9): 2031–2049.

PMCID:: PMC450125

Summary Page Browse PDF–3.6M

Select item 21947315.

Synergistic repression of anaerobic genes by Mot3 and Rox1 in Saccharomyces cerevisiae

Odeniel Sertil, Rachna Kapoor, Brian D. Cohen, Natalia Abramova, Charles V. Lowry

Nucleic Acids Res. 2003 Oct 15; 31(20): 5831–5837. doi: 10.1093/nar/gkg792

PMCID:: PMC219473

Abstract Article PDF–171K

Select item 9376216.

Deletion of New Covalently Linked Cell Wall Glycoproteins Alters the Electrophoretic Mobility of Phosphorylated Wall Components of Saccharomyces cerevisiae

Vladimir Mrsa, Margit Ecker, Sabine Strahl-Bolsinger, Manfred Nimtz, Ludwig Lehle, Widmar Tanner

J Bacteriol. 1999 May; 181(10): 3076–3086. doi: 10.1128/jb.181.10.3076-3086.1999

PMCID:: PMC93762

Abstract Article PDF–794K

Select item 3038217.

Induction and repression of DAN1 and the family of anaerobic mannoprotein genes in Saccharomyces cerevisiae occurs through a complex array of regulatory sites

Brian D. Cohen, Odeniel Sertil, Natalia E. Abramova, Kelvin J. A. Davies, Charles V. Lowry

Nucleic Acids Res. 2001 Feb 1; 29(3): 799–808. doi: 10.1093/nar/29.3.799

PMCID:: PMC30382

Abstract Article PDF–231K

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