PMC Links for GEO Profiles (Select 1575527) - PMC

Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry

Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224

PMCID:: PMC9209811

Abstract Article PDF–818K

Select item 77214754.

A Selective Autophagy Pathway for Phase-Separated Endocytic Protein Deposits

Florian Wilfling, Chia-Wei Lee, Philipp S. Erdmann, Yumei Zheng, Dawafuti Sherpa, Stefan Jentsch, Boris Pfander, Brenda A. Schulman, Wolfgang Baumeister

Mol Cell. 2020 Dec 3; 80(5): 764–778.e7. doi: 10.1016/j.molcel.2020.10.030

PMCID:: PMC7721475

Abstract Article

Select item 71382225.

DeepPhagy: a deep learning framework for quantitatively measuring autophagy activity in Saccharomyces cerevisiae

Ying Zhang, Yubin Xie, Wenzhong Liu, Wankun Deng, Di Peng, Chenwei Wang, Haodong Xu, Chen Ruan, Yongjie Deng, Yaping Guo, Chenjun Lu, Cong Yi, Jian Ren, Yu Xue

Autophagy. 2020; 16(4): 626–640. Published online 2019 Jun 20. doi: 10.1080/15548627.2019.1632622

PMCID:: PMC7138222

Abstract Article PDF–8.0M

Select item 66157106.

The nucleotide sequence of Saccharomyces cerevisiae chromosome XII

M. Johnston, L. Hillier, L. Riles, other members of the Genome Sequencing Center, K. Albermann, B. André, W. Ansorge, V. Benes, M. Brückner, H. Delius, E. Dubois, A. Düsterhöft, K.-D. Entian, M. Floeth, A. Goffeau, U. Hebling, K. Heumann, D. Heuss-Neitzel, H. Hilbert, F. Hilger, K. Kleine, P. Kötter, E. J. Louis, F. Messenguy, H. W. Mewes, T. Miosga, D. Möstl, S. Müller-Auer, U. Nentwich, B. Obermaier, E. Piravandi, T. M. Pohl, D. Portetelle, B. Purnelle, S. Rechmann, M. Rieger, M. Rinke, M. Rose, M. Scharfe, B. Scherens, P. Scholler, C. Schwager, S. Schwarz, A. P. Underwood, L. A. Urrestarazu, M. Vandenbol, P. Verhasselt, F. Vierendeels, M Voet, G. Volckaert, H. Voss, R. Wambutt, E. Wedler, H. Wedler, F. K. Zimmermann, A. Zollner, J. Hani, J. D. Hoheisel

Nature. Author manuscript; available in PMC 2019 Jul 9.

Published in final edited form as: Nature. 1997 May 29; 387(6632 Suppl): 87–90.

PMCID:: PMC6615710

Abstract Article PDF–424K

Select item 64625027.

Analysis of autophagy activated during changes in carbon source availability in yeast cells

Ryo Iwama, Yoshinori Ohsumi

J Biol Chem. 2019 Apr 5; 294(14): 5590–5603. Published online 2019 Feb 12. doi: 10.1074/jbc.RA118.005698

PMCID:: PMC6462502

Abstract Article PDF–4.4M

Select item 60700028.

The exoribonuclease Xrn1 is a post-transcriptional negative regulator of autophagy

Elizabeth Delorme-Axford, Emma Abernathy, Nicholas J. Lennemann, Amélie Bernard, Aileen Ariosa, Carolyn B. Coyne, Karla Kirkegaard, Daniel J. Klionsky

Autophagy. 2018; 14(5): 898–912. Published online 2018 Mar 21. doi: 10.1080/15548627.2018.1441648

PMCID:: PMC6070002

Abstract Article PDF–1.2M

Select item 56618859.

A global interaction network maps a wiring diagram of cellular function

Michael Costanzo, Benjamin VanderSluis, Elizabeth N. Koch, Anastasia Baryshnikova, Carles Pons, Guihong Tan, Wen Wang, Matej Usaj, Julia Hanchard, Susan D. Lee, Vicent Pelechano, Erin B. Styles, Maximilian Billmann, Jolanda van Leeuwen, Nydia van Dyk, Zhen-Yuan Lin, Elena Kuzmin, Justin Nelson, Jeff S. Piotrowski, Tharan Srikumar, Sondra Bahr, Yiqun Chen, Raamesh Deshpande, Christoph F. Kurat, Sheena C. Li, Zhijian Li, Mojca Mattiazzi Usaj, Hiroki Okada, Natasha Pascoe, Bryan-Joseph San Luis, Sara Sharifpoor, Emira Shuteriqi, Scott W. Simpkins, Jamie Snider, Harsha Garadi Suresh, Yizhao Tan, Hongwei Zhu, Noel Malod-Dognin, Vuk Janjic, Natasa Przulj, Olga G. Troyanskaya, Igor Stagljar, Tian Xia, Yoshikazu Ohya, Anne-Claude Gingras, Brian Raught, Michael Boutros, Lars M. Steinmetz, Claire L. Moore, Adam P. Rosebrock, Amy A. Caudy, Chad L. Myers, Brenda Andrews, Charles Boone

Science. Author manuscript; available in PMC 2017 Oct 30.

Published in final edited form as: Science. 2016 Sep 23; 353(6306): aaf1420. doi: 10.1126/science.aaf1420

PMCID:: PMC5661885

Abstract Article PDF–2.6M

Select item 560025410.

The Genetic Landscape of a Cell

Michael Costanzo, Anastasia Baryshnikova, Jeremy Bellay, Yungil Kim, Eric D. Spear, Carolyn S. Sevier, Huiming Ding, Judice L.Y. Koh, Kiana Toufighi, Sara Mostafavi, Jeany Prinz, Robert P. St. Onge, Benjamin VanderSluis, Taras Makhnevych, Franco J. Vizeacoumar, Solmaz Alizadeh, Sondra Bahr, Renee L. Brost, Yiqun Chen, Murat Cokol, Raamesh Deshpande, Zhijian Li, Zhen-Yuan Lin, Wendy Liang, Michaela Marback, Jadine Paw, Bryan-Joseph San Luis, Ermira Shuteriqi, Amy Hin Yan Tong, Nydia van Dyk, Iain M. Wallace, Joseph A. Whitney, Matthew T. Weirauch, Guoqing Zhong, Hongwei Zhu, Walid A. Houry, Michael Brudno, Sasan Ragibizadeh, Balázs Papp, Csaba Pál, Frederick P. Roth, Guri Giaever, Corey Nislow, Olga G. Troyanskaya, Howard Bussey, Gary D. Bader, Anne-Claude Gingras, Quaid D. Morris, Philip M. Kim, Chris A. Kaiser, Chad L. Myers, Brenda J. Andrews, Charles Boone

Science. Author manuscript; available in PMC 2017 Sep 15.

Published in final edited form as: Science. 2010 Jan 22; 327(5964): 425–431. doi: 10.1126/science.1180823

PMCID:: PMC5600254

Abstract Article PDF–2.4M

Select item 559294511.

A Functional Link Between Bir1 and the Saccharomyces cerevisiae Ctf19 Kinetochore Complex Revealed Through Quantitative Fitness Analysis

Vasso Makrantoni, Adam Ciesiolka, Conor Lawless, Josefin Fernius, Adele Marston, David Lydall, Michael J. R. Stark

G3 (Bethesda) 2017 Sep; 7(9): 3203–3215. Published online 2017 Jul 28. doi: 10.1534/g3.117.300089

PMCID:: PMC5592945

Abstract Article PDF–1.7M

Select item 541290312.

Conserved Atg8 recognition sites mediate Atg4 association with autophagosomal membranes and Atg8 deconjugation

Susana Abreu, Franziska Kriegenburg, Rubén Gómez‐Sánchez, Muriel Mari, Jana Sánchez‐Wandelmer, Mads Skytte Rasmussen, Rodrigo Soares Guimarães, Bettina Zens, Martina Schuschnig, Ralph Hardenberg, Matthias Peter, Terje Johansen, Claudine Kraft, Sascha Martens, Fulvio Reggiori

EMBO Rep. 2017 May; 18(5): 765–780. Published online 2017 Mar 22. doi: 10.15252/embr.201643146

PMCID:: PMC5412903

Abstract Article PDF–2.0M

Select item 540785713.

AMPK and vacuole-associated Atg14p orchestrate μ-lipophagy for energy production and long-term survival under glucose starvation

Arnold Y Seo, Pick-Wei Lau, Daniel Feliciano, Prabuddha Sengupta, Mark A Le Gros, Bertrand Cinquin, Carolyn A Larabell, Jennifer Lippincott-Schwartz

eLife. 2017; 6: e21690. Published online 2017 Apr 10. doi: 10.7554/eLife.21690

PMCID:: PMC5407857

Abstract Article PDF–5.8M

Select item 459059514.

A defect of the vacuolar putative lipase Atg15 accelerates degradation of lipid droplets through lipolysis

Yuichiro Maeda, Masahide Oku, Yasuyoshi Sakai

Autophagy. 2015 Aug; 11(8): 1247–1258. Published online 2015 Sep 14. doi: 10.1080/15548627.2015.1056969

PMCID:: PMC4590595

Abstract Article PDF–894K

Select item 393722215.

High-Resolution Profiling of Stationary-Phase Survival Reveals Yeast Longevity Factors and Their Genetic Interactions

Erika Garay, Sergio E. Campos, Jorge González de la Cruz, Ana P. Gaspar, Adrian Jinich, Alexander DeLuna

PLoS Genet. 2014 Feb; 10(2): e1004168. Published online 2014 Feb 27. doi: 10.1371/journal.pgen.1004168

PMCID:: PMC3937222

Abstract Article PDF–4.9M

Select item 389034916.

Lipid droplet autophagy in the yeast Saccharomyces cerevisiae

Tim van Zutphen, Virginia Todde, Rinse de Boer, Martin Kreim, Harald F. Hofbauer, Heimo Wolinski, Marten Veenhuis, Ida J. van der Klei, Sepp D. Kohlwein

Mol Biol Cell. 2014 Jan 15; 25(2): 290–301. doi: 10.1091/mbc.E13-08-0448

PMCID:: PMC3890349

Abstract Article PDF–2.5M

Select item 366918617.

Structures of Atg7-Atg3 and Atg7-Atg10 reveal noncanonical mechanisms of E2 recruitment by the autophagy E1

Stephen E. Kaiser, Yu Qiu, Julie E. Coats, Kai Mao, Daniel J. Klionsky, Brenda A. Schulman

Autophagy. 2013 May 1; 9(5): 778–780. Published online 2013 Feb 6. doi: 10.4161/auto.23644

PMCID:: PMC3669186

Abstract Article PDF–1.0M

Select item 353790818.

Global Analysis of Yeast mRNPs

Sarah F. Mitchell, Saumya Jain, Meipei She, Roy Parker

Nat Struct Mol Biol. Author manuscript; available in PMC 2013 Jul 1.

Published in final edited form as: Nat Struct Mol Biol. 2013 Jan; 20(1): 127–133. Published online 2012 Dec 9. doi: 10.1038/nsmb.2468

PMCID:: PMC3537908

Abstract Article PDF–1.2M

Select item 351569019.

Noncanonical E2 recruitment by the autophagy E1 revealed by Atg7–Atg3 and Atg7–Atg10 structures

Stephen E. Kaiser, Kai Mao, Asad M. Taherbhoy, Shanshan Yu, Jennifer L. Olszewski, David M. Duda, Igor Kurinov, Alan Deng, Timothy D. Fenn, Daniel J. Klionsky, Brenda A. Schulman

Nat Struct Mol Biol. Author manuscript; available in PMC 2013 Jun 1.

Published in final edited form as: Nat Struct Mol Biol. 2012 Dec; 19(12): 1242–1249. Published online 2012 Nov 11. doi: 10.1038/nsmb.2415

PMCID:: PMC3515690

Abstract Article PDF–2.6M

Select item 338691920.

A Late Form of Nucleophagy in Saccharomyces cerevisiae

Dalibor Mijaljica, Mark Prescott, Rodney J. Devenish

PLoS One. 2012; 7(6): e40013. Published online 2012 Jun 29. doi: 10.1371/journal.pone.0040013

PMCID:: PMC3386919

Abstract Article PDF–914K

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