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Items: 1 to 20 of 22

1.
A systematic proximity ligation approach to studying protein‐substrate specificity identifies the substrate spectrum of the Ssh1 translocon
Nir Cohen, Naama Aviram, Maya Schuldiner
EMBO J. 2023 Jun; 42(11): e113385. Published online 2023 Apr 19. doi: 10.15252/embj.2022113385
PMCID:
PMC10233368
AbstractArticlePDF–1.2M
2.
New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources
Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry
Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224
PMCID:
PMC9209811
AbstractArticlePDF–818K
3.
A global interaction network maps a wiring diagram of cellular function
Michael Costanzo, Benjamin VanderSluis, Elizabeth N. Koch, Anastasia Baryshnikova, Carles Pons, Guihong Tan, Wen Wang, Matej Usaj, Julia Hanchard, Susan D. Lee, Vicent Pelechano, Erin B. Styles, Maximilian Billmann, Jolanda van Leeuwen, Nydia van Dyk, Zhen-Yuan Lin, Elena Kuzmin, Justin Nelson, Jeff S. Piotrowski, Tharan Srikumar, Sondra Bahr, Yiqun Chen, Raamesh Deshpande, Christoph F. Kurat, Sheena C. Li, Zhijian Li, Mojca Mattiazzi Usaj, Hiroki Okada, Natasha Pascoe, Bryan-Joseph San Luis, Sara Sharifpoor, Emira Shuteriqi, Scott W. Simpkins, Jamie Snider, Harsha Garadi Suresh, Yizhao Tan, Hongwei Zhu, Noel Malod-Dognin, Vuk Janjic, Natasa Przulj, Olga G. Troyanskaya, Igor Stagljar, Tian Xia, Yoshikazu Ohya, Anne-Claude Gingras, Brian Raught, Michael Boutros, Lars M. Steinmetz, Claire L. Moore, Adam P. Rosebrock, Amy A. Caudy, Chad L. Myers, Brenda Andrews, Charles Boone
Science. Author manuscript; available in PMC 2017 Oct 30.
Published in final edited form as: Science. 2016 Sep 23; 353(6306): aaf1420. doi: 10.1126/science.aaf1420
PMCID:
PMC5661885
AbstractArticlePDF–2.6M
4.
The Genetic Landscape of a Cell
Michael Costanzo, Anastasia Baryshnikova, Jeremy Bellay, Yungil Kim, Eric D. Spear, Carolyn S. Sevier, Huiming Ding, Judice L.Y. Koh, Kiana Toufighi, Sara Mostafavi, Jeany Prinz, Robert P. St. Onge, Benjamin VanderSluis, Taras Makhnevych, Franco J. Vizeacoumar, Solmaz Alizadeh, Sondra Bahr, Renee L. Brost, Yiqun Chen, Murat Cokol, Raamesh Deshpande, Zhijian Li, Zhen-Yuan Lin, Wendy Liang, Michaela Marback, Jadine Paw, Bryan-Joseph San Luis, Ermira Shuteriqi, Amy Hin Yan Tong, Nydia van Dyk, Iain M. Wallace, Joseph A. Whitney, Matthew T. Weirauch, Guoqing Zhong, Hongwei Zhu, Walid A. Houry, Michael Brudno, Sasan Ragibizadeh, Balázs Papp, Csaba Pál, Frederick P. Roth, Guri Giaever, Corey Nislow, Olga G. Troyanskaya, Howard Bussey, Gary D. Bader, Anne-Claude Gingras, Quaid D. Morris, Philip M. Kim, Chris A. Kaiser, Chad L. Myers, Brenda J. Andrews, Charles Boone
Science. Author manuscript; available in PMC 2017 Sep 15.
Published in final edited form as: Science. 2010 Jan 22; 327(5964): 425–431. doi: 10.1126/science.1180823
PMCID:
PMC5600254
AbstractArticlePDF–2.4M
5.
Interrogation of γ-tubulin alleles using high-resolution fitness measurements reveals a distinct cytoplasmic function in spindle alignment
Kristian Shulist, Eric Yen, Susanne Kaitna, Allen Leary, Alexandra Decterov, Debarun Gupta, Jackie Vogel
Sci Rep. 2017; 7: 11398. Published online 2017 Sep 12. doi: 10.1038/s41598-017-11789-7
Correction in:
Sci Rep. 2018; 8: 2513.
PMCID:
PMC5595808
AbstractArticlePDF–5.9M
6.
The Saccharomyces cerevisiae Cdk8 Mediator Represses AQY1 Transcription by Inhibiting Set1p-Dependent Histone Methylation
Michael J. Law, Michael A. Finger
G3 (Bethesda) 2017 Mar; 7(3): 1001–1010. Published online 2017 Jan 30. doi: 10.1534/g3.117.039586
PMCID:
PMC5345701
AbstractArticlePDF–1.7M
7.
The genetic architecture of low-temperature adaptation in the wine yeast Saccharomyces cerevisiae
Estéfani García-Ríos, Miguel Morard, Leopold Parts, Gianni Liti, José M. Guillamón
BMC Genomics. 2017; 18: 159. Published online 2017 Feb 14. doi: 10.1186/s12864-017-3572-2
PMCID:
PMC5310122
AbstractArticlePDF–1.2M
8.
Functional characterisation of long intergenic non-coding RNAs through genetic interaction profiling in Saccharomyces cerevisiae
Dimitris Kyriakou, Emmanouil Stavrou, Panayiota Demosthenous, Georgia Angelidou, Bryan-Joseph San Luis, Charles Boone, Vasilis J. Promponas, Antonis Kirmizis
BMC Biol. 2016; 14: 106. Published online 2016 Dec 7. doi: 10.1186/s12915-016-0325-7
PMCID:
PMC5142380
AbstractArticlePDF–1.2M
9.
Integration of new alternative reference strain genome sequences into the Saccharomyces genome database
Giltae Song, Rama Balakrishnan, Gail Binkley, Maria C. Costanzo, Kyla Dalusag, Janos Demeter, Stacia Engel, Sage T. Hellerstedt, Kalpana Karra, Benjamin C. Hitz, Robert S. Nash, Kelley Paskov, Travis Sheppard, Marek Skrzypek, Shuai Weng, Edith Wong, J. Michael Cherry
Database (Oxford) 2016; 2016: baw074. Published online 2016 May 31. doi: 10.1093/database/baw074
PMCID:
PMC4888754
AbstractArticlePDF–1.0M
10.
One library to make them all: Streamlining yeast library creation by a SWAp-Tag (SWAT) strategy
Ido Yofe, Uri Weill, Matthias Meurer, Silvia Chuartzman, Einat Zalckvar, Omer Goldman, Shifra Ben-Dor, Conny Schütze, Nils Wiedemann, Michael Knop, Anton Khmelinskii, Maya Schuldiner
Nat Methods. Author manuscript; available in PMC 2016 Sep 22.
Published in final edited form as: Nat Methods. 2016 Apr; 13(4): 371–378. Published online 2016 Feb 29. doi: 10.1038/nmeth.3795
PMCID:
PMC4869835
AbstractArticlePDF–2.7M
11.
An inter‐species protein–protein interaction network across vast evolutionary distance
Quan Zhong, Samuel J Pevzner, Tong Hao, Yang Wang, Roberto Mosca, Jörg Menche, Mikko Taipale, Murat Taşan, Changyu Fan, Xinping Yang, Patrick Haley, Ryan R Murray, Flora Mer, Fana Gebreab, Stanley Tam, Andrew MacWilliams, Amélie Dricot, Patrick Reichert, Balaji Santhanam, Lila Ghamsari, Michael A Calderwood, Thomas Rolland, Benoit Charloteaux, Susan Lindquist, Albert‐László Barabási, David E Hill, Patrick Aloy, Michael E Cusick, Yu Xia, Frederick P Roth, Marc Vidal
Mol Syst Biol. 2016 Apr; 12(4): 865. Published online 2016 Apr 23. doi: 10.15252/msb.20156484
PMCID:
PMC4848758
AbstractArticlePDF–2.1M
12.
The complex genetic and molecular basis of a model quantitative trait
Robert A. Linder, Fabian Seidl, Kimberly Ha, Ian M. Ehrenreich
Mol Biol Cell. 2016 Jan 1; 27(1): 209–218. doi: 10.1091/mbc.E15-06-0408
PMCID:
PMC4694759
AbstractArticlePDF–2.1M
13.
Chemogenomic Study of Carboplatin in Saccharomyces cerevisiae: Inhibition of the NEDDylation Process Overcomes Cellular Resistance Mediated by HuR and Cullin Proteins
Graziele Fonseca de Sousa, Maira de Assis Lima, Débora Fernandes Custodio, Vanessa Morais Freitas, Gisele Monteiro
PLoS One. 2015; 10(12): e0145377. Published online 2015 Dec 21. doi: 10.1371/journal.pone.0145377
PMCID:
PMC4686384
AbstractArticlePDF–2.4M
14.
Sub-Ångstrom resolution x-ray structure details aquaporin-water interactions
Urszula Kosinska Eriksson, Gerhard Fischer, Rosmarie Friemann, Giray Enkavi, Emad Tajkhorshid, Richard Neutze
Science. Author manuscript; available in PMC 2014 Jun 23.
Published in final edited form as: Science. 2013 Jun 14; 340(6138): 1346–1349. doi: 10.1126/science.1234306
PMCID:
PMC4066176
AbstractArticlePDF–1.1M
15.
Reconstitution and Protein Composition Analysis of Endocytic Actin Patches
Alphée Michelot, Michael Costanzo, Ali Sarkeshik, Charles Boone, John R. Yates, III, David G. Drubin
Curr Biol. Author manuscript; available in PMC 2011 Nov 9.
Published in final edited form as: Curr Biol. 2010 Nov 9; 20(21): 1890–1899. Published online 2010 Oct 28. doi: 10.1016/j.cub.2010.10.016
PMCID:
PMC2998891
AbstractArticlePDF–2.6M
16.
Incipient Balancing Selection through Adaptive Loss of Aquaporins in Natural Saccharomyces cerevisiae Populations
Jessica L. Will, Hyun Seok Kim, Jessica Clarke, John C. Painter, Justin C. Fay, Audrey P. Gasch
PLoS Genet. 2010 Apr; 6(4): e1000893. Published online 2010 Apr 1. doi: 10.1371/journal.pgen.1000893
PMCID:
PMC2848549
AbstractArticlePDF–589K
17.
A Combined-Cross Analysis Reveals Genes With Drug-Specific and Background-Dependent Effects on Drug Sensitivity in Saccharomyces cerevisiae
Hyun Seok Kim, Justin C. Fay
Genetics. 2009 Nov; 183(3): 1141–1151. doi: 10.1534/genetics.109.108068
PMCID:
PMC2778966
AbstractArticlePDF–1009K
18.
The undertranslated transcriptome reveals widespread translational silencing by alternative 5' transcript leaders
G Lynn Law, Kellie S Bickel, Vivian L MacKay, David R Morris
Genome Biol. 2005; 6(13): R111. Published online 2006 Jan 3. doi: 10.1186/gb-2005-6-13-r111
PMCID:
PMC1414110
AbstractArticlePDF–8.5M
19.
Large-scale identification of yeast integral membrane protein interactions
John P. Miller, Russell S. Lo, Asa Ben-Hur, Cynthia Desmarais, Igor Stagljar, William Stafford Noble, Stanley Fields
Proc Natl Acad Sci U S A. 2005 Aug 23; 102(34): 12123–12128. Published online 2005 Aug 10. doi: 10.1073/pnas.0505482102
PMCID:
PMC1189342
AbstractArticlePDF–653K
20.
The Saccharomyces cerevisiae aquaporin Aqy1 is involved in sporulation
Frédéric Sidoux-Walter, Nina Pettersson, Stefan Hohmann
Proc Natl Acad Sci U S A. 2004 Dec 14; 101(50): 17422–17427. Published online 2004 Dec 6. doi: 10.1073/pnas.0404337101
PMCID:
PMC536013
AbstractArticlePDF–435K

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