PMC Links for GEO Profiles (Select 19467765) - PMC

Select item 91008231.

Ferroptosis and Apoptosis Are Involved in the Formation of L-Selenomethionine-Induced Ocular Defects in Zebrafish Embryos

Meng Gao, Jun Hu, Yuejie Zhu, Xianqing Wang, Shumin Zeng, Yijiang Hong, Guang Zhao

Int J Mol Sci. 2022 May; 23(9): 4783. Published online 2022 Apr 26. doi: 10.3390/ijms23094783

PMCID:: PMC9100823

Abstract Article PDF–6.4M

Select item 76730382.

Understanding complex dynamics of behavioral, neurochemical and transcriptomic changes induced by prolonged chronic unpredictable stress in zebrafish

Konstantin A. Demin, Anton M. Lakstygal, Nataliya A. Krotova, Alexey Masharsky, Natsuki Tagawa, Maria V. Chernysh, Nikita P. Ilyin, Alexander S. Taranov, David S. Galstyan, Ksenia A. Derzhavina, Nataliia A. Levchenko, Tatiana O. Kolesnikova, Mikael S. Mor, Marina L. Vasyutina, Evgeniya V. Efimova, Nataliia Katolikova, Andrey D. Prjibelski, Raul R. Gainetdinov, Murilo S. de Abreu, Tamara G. Amstislavskaya, Tatyana Strekalova, Allan V. Kalueff

Sci Rep. 2020; 10: 19981. Published online 2020 Nov 17. doi: 10.1038/s41598-020-75855-3

PMCID:: PMC7673038

Abstract Article PDF–1.9M

Select item 53885343.

A metabolic switch controls intestinal differentiation downstream of Adenomatous polyposis coli (APC)

Imelda T Sandoval, Richard Glenn C Delacruz, Braden N Miller, Shauna Hill, Kristofor A Olson, Ana E Gabriel, Kevin Boyd, Christeena Satterfield, Holly Van Remmen, Jared Rutter, David A Jones

eLife. 2017; 6: e22706. Published online 2017 Apr 11. doi: 10.7554/eLife.22706

PMCID:: PMC5388534

Abstract Article PDF–958K

Select item 49155894.

Fold Conservation and Proteolysis in Zebrafish IRBP Structure: Clues to Possible Enzymatic Function?

Debashis Ghosh, Karen M. Haswell, Molly Sprada, Federico Gonzalez-Fernandez

Exp Eye Res. Author manuscript; available in PMC 2017 Jun 1.

Published in final edited form as: Exp Eye Res. 2016 Jun; 147: 78–84. Published online 2016 May 4. doi: 10.1016/j.exer.2016.05.001

PMCID:: PMC4915589

Abstract Article PDF–1.2M

Select item 46844485.

Lxr regulates lipid metabolic and visual perception pathways during zebrafish development

Caroline Lucia Pinto, Sharanya Maanasi Kalasekar, Catherine W. McCollum, Anne Riu, Philip Jonsson, Justin Lopez, Eric Swindell, Abdel Bouhlatouf, Patrick Balaguer, Maria Bondesson, Jan-Åke Gustafsson

Mol Cell Endocrinol. Author manuscript; available in PMC 2017 Jan 5.

Published in final edited form as: Mol Cell Endocrinol. 2016 Jan 5; 419: 29–43. Published online 2015 Sep 30. doi: 10.1016/j.mce.2015.09.030

PMCID:: PMC4684448

Abstract Article PDF–1.5M

Select item 46341376.

RFX transcription factors are essential for hearing in mice

Ran Elkon, Beatrice Milon, Laura Morrison, Manan Shah, Sarath Vijayakumar, Manoj Racherla, Carmen C. Leitch, Lorna Silipino, Shadan Hadi, Michèle Weiss-Gayet, Emmanuèle Barras, Christoph D. Schmid, Aouatef Ait-Lounis, Ashley Barnes, Yang Song, David J. Eisenman, Efrat Eliyahu, Gregory I. Frolenkov, Scott E. Strome, Bénédicte Durand, Norann A. Zaghloul, Sherri M. Jones, Walter Reith, Ronna Hertzano

Nat Commun. 2015; 6: 8549. Published online 2015 Oct 15. doi: 10.1038/ncomms9549

PMCID:: PMC4634137

Abstract Article PDF–5.5M

Select item 46245027.

Structure of Zebrafish IRBP Reveals Fatty Acid Binding

Debashis Ghosh, Karen M. Haswell, Molly Sprada, Federico Gonzalez-Fernandez

Exp Eye Res. Author manuscript; available in PMC 2016 Nov 1.

Published in final edited form as: Exp Eye Res. 2015 Nov; 140: 149–158. Published online 2015 Sep 4. doi: 10.1016/j.exer.2015.08.026

PMCID:: PMC4624502

Abstract Article PDF–2.8M

Select item 44402598.

Zebrafish Lbh-like Is Required for Otx2-mediated Photoreceptor Differentiation

Wen-Hua Li, Li Zhou, Zhi Li, Yang Wang, Jian-Tao Shi, Yan-Jing Yang, Jian-Fang Gui

Int J Biol Sci. 2015; 11(6): 688–700. Published online 2015 May 1. doi: 10.7150/ijbs.11244

PMCID:: PMC4440259

Abstract Article PDF–2.5M

Select item 39847869.

Developmental Stage-Specific Regulation of the Circadian Clock by Temperature in Zebrafish

Kajori Lahiri, Nadine Froehlich, Andreas Heyd, Nicholas S. Foulkes, Daniela Vallone

Biomed Res Int. 2014; 2014: 930308. Published online 2014 Mar 27. doi: 10.1155/2014/930308

PMCID:: PMC3984786

Abstract Article PDF–3.4M

Select item 391843010.

Eye-Specific Gene Expression following Embryonic Ethanol Exposure in Zebrafish: Roles for Heat Shock Factor 1

Bhavani Kashyap, Laurel Pegorsch, Ruth A. Frey, Chi Sun, Eric A. Shelden, Deborah L. Stenkamp

Reprod Toxicol. Author manuscript; available in PMC 2015 Jan 1.

Published in final edited form as: Reprod Toxicol. 2014 Jan; 43: 111–124. Published online 2013 Dec 16. doi: 10.1016/j.reprotox.2013.12.002

PMCID:: PMC3918430

Abstract Article PDF–3.2M

Select item 367580911.

Stable Isotope Labeling in Zebrafish Allows in Vivo Monitoring of Cardiac Morphogenesis

Anne Konzer, Aaron Ruhs, Helene Braun, Benno Jungblut, Thomas Braun, Marcus Krüger

Mol Cell Proteomics. 2013 Jun; 12(6): 1502–1512. Published online 2013 Feb 14. doi: 10.1074/mcp.M111.015594

PMCID:: PMC3675809

Abstract Article PDF–2.2M

Select item 317805912.

Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium

Pascale Gaudet, Michael S. Livstone, Suzanna E. Lewis, Paul D. Thomas

Brief Bioinform. 2011 Sep; 12(5): 449–462. Published online 2011 Aug 27. doi: 10.1093/bib/bbr042

PMCID:: PMC3178059

Abstract Article PDF–1.0M

Select item 294393813.

DNA Demethylase Activity Maintains Intestinal Cells in an Undifferentiated State Following Loss of APC

Kunal Rai, Sharmistha Sarkar, Talmage J. Broadbent, Matthew Voas, Kenneth F. Grossmann, Lincoln D. Nadauld, Somaye Dehghanizadeh, Fanuel T. Hagos, Yumei Li, Rachel K. Toth, Stephanie Chidester, Timothy M. Bahr, W. Evan Johnson, Brad Sklow, Randall Burt, Bradley R. Cairns, David A. Jones

Cell. Author manuscript; available in PMC 2011 Sep 17.

Published in final edited form as: Cell. 2010 Sep 17; 142(6): 930–942. doi: 10.1016/j.cell.2010.08.030

PMCID:: PMC2943938

Abstract Article PDF–3.8M

Select item 289851514.

Interphotoreceptor retinoid-binding protein gene structure in tetrapods and teleost fish

John M. Nickerson, Ruth A. Frey, Vincent T. Ciavatta, Deborah L. Stenkamp

Mol Vis. Author manuscript; available in PMC 2010 Jul 7.

Published in final edited form as: Mol Vis. 2006 Dec 9; 12: 1565–1585. Published online 2006 Dec 9.

PMCID:: PMC2898515

Abstract Article PDF–4.4M

Select item 282355115.

Dnmt3 and G9a Cooperate for Tissue-specific Development in Zebrafish

Kunal Rai, Itrat F. Jafri, Stephanie Chidester, Smitha R. James, Adam R. Karpf, Bradley R. Cairns, David A. Jones

J Biol Chem. 2010 Feb 5; 285(6): 4110–4121. Published online 2009 Nov 29. doi: 10.1074/jbc.M109.073676

PMCID:: PMC2823551

Abstract Article PDF–2.3M

Select item 272853516.

Zebrafish reward mutants reveal novel transcripts mediating the behavioral effects of amphetamine

Katharine J Webb, William HJ Norton, Dietrich Trümbach, Annemarie H Meijer, Jovica Ninkovic, Stefanie Topp, Daniel Heck, Carsten Marr, Wolfgang Wurst, Fabian J Theis, Herman P Spaink, Laure Bally-Cuif

Genome Biol. 2009; 10(7): R81. Published online 2009 Jul 31. doi: 10.1186/gb-2009-10-7-r81

PMCID:: PMC2728535

Abstract Article PDF–1.4M

Select item 185336817.

Differential Expression of Photoreceptor-Specific Genes in the Retina of a Zebrafish Cadherin2 Mutant glass onion and Zebrafish Cadherin4 Morphants

Q. Liu, R. A. Frey, S. G. Babb-Clendenon, B. Liu, J. Francl, A. L. Wilson, J. A. Marrs, D. L. Stenkamp

Exp Eye Res. Author manuscript; available in PMC 2008 Jan 1.

Published in final edited form as: Exp Eye Res. 2007 Jan; 84(1): 163–175. Published online 2006 Oct 30. doi: 10.1016/j.exer.2006.09.011

PMCID:: PMC1853368

Abstract Article PDF–1.2M

Select item 159290218.

Zebra Fish Dnmt1 and Suv39h1 Regulate Organ-Specific Terminal Differentiation during Development

Kunal Rai, Lincoln D. Nadauld, Stephanie Chidester, Elizabeth J. Manos, Smitha R. James, Adam R. Karpf, Bradley R. Cairns, David A. Jones

Mol Cell Biol. 2006 Oct; 26(19): 7077–7085. doi: 10.1128/MCB.00312-06

PMCID:: PMC1592902

Abstract Article PDF–581K

Select item 156917719.

Dual roles for adenomatous polyposis coli in regulating retinoic acid biosynthesis and Wnt during ocular development

Lincoln D. Nadauld, Stephanie Chidester, Dawne N. Shelton, Kunal Rai, Talmage Broadbent, Imelda T. Sandoval, Peter W. Peterson, Elizabeth J. Manos, Chris M. Ireland, H. Joseph Yost, David A. Jones

Proc Natl Acad Sci U S A. 2006 Sep 5; 103(36): 13409–13414. Published online 2006 Aug 28. doi: 10.1073/pnas.0601634103

PMCID:: PMC1569177

Abstract Article PDF–1.1M

Select item 13924120.

Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences

Mammalian Gene Collection (MGC) Program Team

Proc Natl Acad Sci U S A. 2002 Dec 24; 99(26): 16899–16903. Published online 2002 Dec 11. doi: 10.1073/pnas.242603899

PMCID:: PMC139241

Abstract Article PDF–118K

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