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Select item 98363481.

A synthetic genetic array screen for interactions with the RNA helicase DED1 during cell stress in budding yeast

Sara B Carey, Hannah M List, Ashwin Siby, Paolo Guerra, Timothy A Bolger

G3 (Bethesda) 2023 Jan; 13(1): jkac296. Published online 2022 Nov 21. doi: 10.1093/g3journal/jkac296

PMCID:: PMC9836348

Abstract Article PDF–857K

Select item 92098112.

New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources

Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry

Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224

PMCID:: PMC9209811

Abstract Article PDF–818K

Select item 84613053.

Autophagy as a Mechanism for Adaptive Prediction-Mediated Emergence of Drug Resistance

Nivedita Nivedita, John D. Aitchison, Nitin S. Baliga

Front Microbiol. 2021; 12: 712631. Published online 2021 Sep 10. doi: 10.3389/fmicb.2021.712631

PMCID:: PMC8461305

Abstract Article PDF–4.8M

Select item 76574684.

The yeast FIT2 homologs are necessary to maintain cellular proteostasis and membrane lipid homeostasis

Wei Sheng Yap, Peter Shyu, Jr, Maria Laura Gaspar, Stephen A. Jesch, Charlie Marvalim, William A. Prinz, Susan A. Henry, Guillaume Thibault

J Cell Sci. 2020 Nov 1; 133(21): jcs248526. Published online 2020 Nov 5. doi: 10.1242/jcs.248526

PMCID:: PMC7657468

Abstract Article

Select item 71382225.

DeepPhagy: a deep learning framework for quantitatively measuring autophagy activity in Saccharomyces cerevisiae

Ying Zhang, Yubin Xie, Wenzhong Liu, Wankun Deng, Di Peng, Chenwei Wang, Haodong Xu, Chen Ruan, Yongjie Deng, Yaping Guo, Chenjun Lu, Cong Yi, Jian Ren, Yu Xue

Autophagy. 2020; 16(4): 626–640. Published online 2019 Jun 20. doi: 10.1080/15548627.2019.1632622

PMCID:: PMC7138222

Abstract Article PDF–8.0M

Select item 69336466.

Deletion of Atg22 gene contributes to reduce programmed cell death induced by acetic acid stress in Saccharomyces cerevisiae

Jingjin Hu, Yachen Dong, Wei Wang, Wei Zhang, Hanghang Lou, Qihe Chen

Biotechnol Biofuels. 2019; 12: 298. Published online 2019 Dec 27. doi: 10.1186/s13068-019-1638-x

PMCID:: PMC6933646

Abstract Article PDF–6.1M

Select item 66464037.

Vps10-mediated targeting of Pep4 determines the activity of the vacuole in a substrate-dependent manner

Fahd Boutouja, Christian M. Stiehm, Thomas Mastalski, Rebecca Brinkmeier, Christina Reidick, Fouzi El Magraoui, Harald W. Platta

Sci Rep. 2019; 9: 10557. Published online 2019 Jul 22. doi: 10.1038/s41598-019-47184-7

PMCID:: PMC6646403

Abstract Article PDF–3.1M

Select item 57653598.

Genome-Wide Mapping of Decay Factor–mRNA Interactions in Yeast Identifies Nutrient-Responsive Transcripts as Targets of the Deadenylase Ccr4

Jason E. Miller, Liye Zhang, Haoyang Jiang, Yunfei Li, B. Franklin Pugh, Joseph C. Reese

G3 (Bethesda) 2018 Jan; 8(1): 315–330. Published online 2017 Nov 20. doi: 10.1534/g3.117.300415

PMCID:: PMC5765359

Abstract Article PDF–2.2M

Select item 56618859.

A global interaction network maps a wiring diagram of cellular function

Michael Costanzo, Benjamin VanderSluis, Elizabeth N. Koch, Anastasia Baryshnikova, Carles Pons, Guihong Tan, Wen Wang, Matej Usaj, Julia Hanchard, Susan D. Lee, Vicent Pelechano, Erin B. Styles, Maximilian Billmann, Jolanda van Leeuwen, Nydia van Dyk, Zhen-Yuan Lin, Elena Kuzmin, Justin Nelson, Jeff S. Piotrowski, Tharan Srikumar, Sondra Bahr, Yiqun Chen, Raamesh Deshpande, Christoph F. Kurat, Sheena C. Li, Zhijian Li, Mojca Mattiazzi Usaj, Hiroki Okada, Natasha Pascoe, Bryan-Joseph San Luis, Sara Sharifpoor, Emira Shuteriqi, Scott W. Simpkins, Jamie Snider, Harsha Garadi Suresh, Yizhao Tan, Hongwei Zhu, Noel Malod-Dognin, Vuk Janjic, Natasa Przulj, Olga G. Troyanskaya, Igor Stagljar, Tian Xia, Yoshikazu Ohya, Anne-Claude Gingras, Brian Raught, Michael Boutros, Lars M. Steinmetz, Claire L. Moore, Adam P. Rosebrock, Amy A. Caudy, Chad L. Myers, Brenda Andrews, Charles Boone

Science. Author manuscript; available in PMC 2017 Oct 30.

Published in final edited form as: Science. 2016 Sep 23; 353(6306): aaf1420. doi: 10.1126/science.aaf1420

PMCID:: PMC5661885

Abstract Article PDF–2.6M

Select item 560025410.

The Genetic Landscape of a Cell

Michael Costanzo, Anastasia Baryshnikova, Jeremy Bellay, Yungil Kim, Eric D. Spear, Carolyn S. Sevier, Huiming Ding, Judice L.Y. Koh, Kiana Toufighi, Sara Mostafavi, Jeany Prinz, Robert P. St. Onge, Benjamin VanderSluis, Taras Makhnevych, Franco J. Vizeacoumar, Solmaz Alizadeh, Sondra Bahr, Renee L. Brost, Yiqun Chen, Murat Cokol, Raamesh Deshpande, Zhijian Li, Zhen-Yuan Lin, Wendy Liang, Michaela Marback, Jadine Paw, Bryan-Joseph San Luis, Ermira Shuteriqi, Amy Hin Yan Tong, Nydia van Dyk, Iain M. Wallace, Joseph A. Whitney, Matthew T. Weirauch, Guoqing Zhong, Hongwei Zhu, Walid A. Houry, Michael Brudno, Sasan Ragibizadeh, Balázs Papp, Csaba Pál, Frederick P. Roth, Guri Giaever, Corey Nislow, Olga G. Troyanskaya, Howard Bussey, Gary D. Bader, Anne-Claude Gingras, Quaid D. Morris, Philip M. Kim, Chris A. Kaiser, Chad L. Myers, Brenda J. Andrews, Charles Boone

Science. Author manuscript; available in PMC 2017 Sep 15.

Published in final edited form as: Science. 2010 Jan 22; 327(5964): 425–431. doi: 10.1126/science.1180823

PMCID:: PMC5600254

Abstract Article PDF–2.4M

Select item 558638311.

Histone Acetylation, Not Stoichiometry, Regulates Linker Histone Binding in Saccharomyces cerevisiae

Mackenzie B. D. Lawrence, Nicolas Coutin, Jennifer K. Choi, Benjamin J. E. Martin, Nicholas A. T. Irwin, Barry Young, Christopher Loewen, LeAnn J. Howe

Genetics. 2017 Sep; 207(1): 347–355. Published online 2017 Jul 26. doi: 10.1534/genetics.117.1132

PMCID:: PMC5586383

Abstract Article PDF–1.4M

Select item 470795212.

Protein-RNA networks revealed through covalent RNA marks

Christopher P. Lapointe, Daniel Wilinski, Harriet A. J. Saunders, Marvin Wickens

Nat Methods. Author manuscript; available in PMC 2016 May 18.

Published in final edited form as: Nat Methods. 2015 Dec; 12(12): 1163–1170. Published online 2015 Nov 2. doi: 10.1038/nmeth.3651

PMCID:: PMC4707952

Abstract Article PDF–856K

Select item 470301213.

Target selection by natural and redesigned PUF proteins

Douglas F. Porter, Yvonne Y. Koh, Brett VanVeller, Ronald T. Raines, Marvin Wickens

Proc Natl Acad Sci U S A. 2015 Dec 29; 112(52): 15868–15873. Published online 2015 Dec 14. doi: 10.1073/pnas.1508501112

PMCID:: PMC4703012

Abstract Article PDF–1.3M

Select item 419835614.

Autophagy is required for G₁/G₀ quiescence in response to nitrogen starvation in Saccharomyces cerevisiae

Zhenyi An, Amina Tassa, Collin Thomas, Rui Zhong, Guanghua Xiao, Rati Fotedar, Benjamin P Tu, Daniel J Klionsky, Beth Levine

Autophagy. 2014 Oct 1; 10(10): 1702–1711. Published online 2014 Aug 12. doi: 10.4161/auto.32122

PMCID:: PMC4198356

Abstract Article PDF–2.3M

Select item 393722215.

High-Resolution Profiling of Stationary-Phase Survival Reveals Yeast Longevity Factors and Their Genetic Interactions

Erika Garay, Sergio E. Campos, Jorge González de la Cruz, Ana P. Gaspar, Adrian Jinich, Alexander DeLuna

PLoS Genet. 2014 Feb; 10(2): e1004168. Published online 2014 Feb 27. doi: 10.1371/journal.pgen.1004168

PMCID:: PMC3937222

Abstract Article PDF–4.9M

Select item 376403616.

Genome-Wide Study of the Adaptation of Saccharomyces cerevisiae to the Early Stages of Wine Fermentation

Maite Novo, Ana Mangado, Manuel Quirós, Pilar Morales, Zoel Salvadó, Ramon Gonzalez

PLoS One. 2013; 8(9): e74086. Published online 2013 Sep 5. doi: 10.1371/journal.pone.0074086

PMCID:: PMC3764036

Abstract Article PDF–496K

Select item 331716017.

Functional wiring of the yeast kinome revealed by global analysis of genetic network motifs

Sara Sharifpoor, Dewald van Dyk, Michael Costanzo, Anastasia Baryshnikova, Helena Friesen, Alison C. Douglas, Ji-Young Youn, Benjamin VanderSluis, Chad L. Myers, Balázs Papp, Charles Boone, Brenda J. Andrews

Genome Res. 2012 Apr; 22(4): 791–801. doi: 10.1101/gr.129213.111

PMCID:: PMC3317160

Abstract Article PDF–998K

Select item 319815618.

A mitochondrial-focused genetic interaction map reveals a scaffold-like complex required for inner membrane organization in mitochondria

Suzanne Hoppins, Sean R. Collins, Ann Cassidy-Stone, Eric Hummel, Rachel M. DeVay, Laura L. Lackner, Benedikt Westermann, Maya Schuldiner, Jonathan S. Weissman, Jodi Nunnari

J Cell Biol. 2011 Oct 17; 195(2): 323–340. doi: 10.1083/jcb.201107053

PMCID:: PMC3198156

Abstract Article PDF–4.1M

Select item 312721119.

Identification of autophagy genes participating in zinc-induced necrotic cell death in Saccharomyces cerevisiae

Slawomir A Dziedzic, Allan B Caplan

Autophagy. 2011 May; 7(5): 490–500. Published online 2011 May 1. doi: 10.4161/auto.7.5.14872

PMCID:: PMC3127211

Abstract Article PDF–6.1M

Select item 201372720.

An Interrelationship Between Autophagy and Filamentous Growth in Budding Yeast

Jun Ma, Rui Jin, Xiaoyu Jia, Craig J. Dobry, Li Wang, Fulvio Reggiori, Ji Zhu, Anuj Kumar

Genetics. 2007 Sep; 177(1): 205–214. doi: 10.1534/genetics.107.076596

PMCID:: PMC2013727

Abstract Article PDF–1.2M

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