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Select item 108724771.

Protein interaction network revealed by quantitative proteomic analysis links TFIIB to multiple aspects of the transcription cycle

Michael J. O’Brien, Athar Ansari

Biochim Biophys Acta Proteins Proteom. Author manuscript; available in PMC 2024 Feb 16.

Published in final edited form as: Biochim Biophys Acta Proteins Proteom. 2024 Jan 1; 1872(1): 140968. Published online 2023 Oct 19. doi: 10.1016/j.bbapap.2023.140968

PMCID:: PMC10872477

Abstract Article PDF–1.7M

Select item 108687272.

Adaptive preservation of orphan ribosomal proteins in chaperone-dispersed condensates

Asif Ali, Rania Garde, Olivia C. Schaffer, Jared A. M. Bard, Kabir Husain, Samantha Keyport Kik, Kathleen A. Davis, Sofia Luengo-Woods, Maya G. Igarashi, D. Allan Drummond, Allison H. Squires, David Pincus

Nat Cell Biol. Author manuscript; available in PMC 2024 Feb 15.

Published in final edited form as: Nat Cell Biol. 2023 Nov; 25(11): 1691–1703. Published online 2023 Oct 16. doi: 10.1038/s41556-023-01253-2

PMCID:: PMC10868727

Abstract Article PDF–7.0M

Select item 107988583.

Fast-evolving cofactors regulate the role of HEATR5 complexes in intra-Golgi trafficking

Lucas J. Marmorale, Huan Jin, Thomas G. Reidy, Brandon Palomino-Alonso, Christopher J. Zysnarski, Fatima Jordan-Javed, Sagar Lahiri, Mara C. Duncan

J Cell Biol. 2024 Mar 4; 223(3): e202309047. Published online 2024 Jan 19. doi: 10.1083/jcb.202309047

PMCID:: PMC10798858

Abstract Article PDF–6.4M

Select item 102350864.

Rio1 downregulates centromeric RNA levels to promote the timely assembly of structurally fit kinetochores

Ksenia Smurova, Michela Damizia, Carmela Irene, Stefania Stancari, Giovanna Berto, Giulia Perticari, Maria Giuseppina Iacovella, Ilaria D’Ambrosio, Maria Giubettini, Réginald Philippe, Chiara Baggio, Elisabetta Callegaro, Andrea Casagranda, Alessandro Corsini, Vincenzo Gentile Polese, Anna Ricci, Erik Dassi, Peter De Wulf

Nat Commun. 2023; 14: 3172. Published online 2023 Jun 1. doi: 10.1038/s41467-023-38920-9

PMCID:: PMC10235086

Abstract Article PDF–2.6M

Select item 96309865.

A balancing act: interactions within NuA4/TIP60 regulate picNuA4 function in Saccharomyces cerevisiae and humans

Phoebe Y T Lu, Alyssa C Kirlin, Maria J Aristizabal, Hilary T Brewis, Nancy Lévesque, Dheva T Setiaputra, Nikita Avvakumov, Joris J Benschop, Marian Groot Koerkamp, Frank C P Holstege, Nevan J Krogan, Calvin K Yip, Jacques Côté, Michael S Kobor

Genetics. 2022 Nov; 222(3): iyac136. Published online 2022 Sep 6. doi: 10.1093/genetics/iyac136

PMCID:: PMC9630986

Abstract Article PDF–2.2M

Select item 92098116.

New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources

Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry

Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224

PMCID:: PMC9209811

Abstract Article PDF–818K

Select item 88049297.

Oxidative stress protein Oxr1 promotes V‐ATPase holoenzyme disassembly in catalytic activity‐independent manner

Md. Murad Khan, Seowon Lee, Sergio Couoh‐Cardel, Rebecca A Oot, Hyunmin Kim, Stephan Wilkens, Soung‐Hun Roh

EMBO J. 2022 Feb 1; 41(3): e109360. Published online 2021 Dec 17. doi: 10.15252/embj.2021109360

PMCID:: PMC8804929

Abstract Article PDF–5.5M

Select item 81029108.

Rqc1 and other yeast proteins containing highly positively charged sequences are not targets of the RQC complex

Géssica C. Barros, Rodrigo D. Requião, Rodolfo L. Carneiro, Claudio A. Masuda, Mariana H. Moreira, Silvana Rossetto, Tatiana Domitrovic, Fernando L. Palhano

J Biol Chem. 2021 Jan-Jun; 296: 100586. Published online 2021 Mar 24. doi: 10.1016/j.jbc.2021.100586

PMCID:: PMC8102910

Abstract Article PDF–3.4M

Select item 77488169.

Subcellular localization of the J-protein Sis1 regulates the heat shock response

Zoë A. Feder, Asif Ali, Abhyudai Singh, Joanna Krakowiak, Xu Zheng, Vytas P. Bindokas, Donald Wolfgeher, Stephen J. Kron, David Pincus

J Cell Biol. 2021 Jan 4; 220(1): e202005165. Published online 2020 Dec 16. doi: 10.1083/jcb.202005165

PMCID:: PMC7748816

Abstract Article PDF–4.6M

Select item 755483510.

Cooperativity between the Ribosome-Associated Chaperone Ssb/RAC and the Ubiquitin Ligase Ltn1 in Ubiquitination of Nascent Polypeptides

Arnab Ghosh, Natalia Shcherbik

Int J Mol Sci. 2020 Sep; 21(18): 6815. Published online 2020 Sep 17. doi: 10.3390/ijms21186815

PMCID:: PMC7554835

Abstract Article PDF–3.7M

Select item 727317711.

Chaperone-Mediated Protein Disaggregation Triggers Proteolytic Clearance of Intra-nuclear Protein Inclusions

Fabian den Brave, Lucas V. Cairo, Chandhuru Jagadeesan, Carmen Ruger-Herreros, Axel Mogk, Bernd Bukau, Stefan Jentsch

Cell Rep. 2020 Jun 2; 31(9): 107680. Published online 2020 Jun 2. doi: 10.1016/j.celrep.2020.107680

PMCID:: PMC7273177

Abstract Article

Select item 696490112.

Aggregation of CAT tails blocks their degradation and causes proteotoxicity in S. cerevisiae

Cole S. Sitron, Joseph H. Park, Jenna M. Giafaglione, Onn Brandman

PLoS One. 2020; 15(1): e0227841. Published online 2020 Jan 16. doi: 10.1371/journal.pone.0227841

PMCID:: PMC6964901

Abstract Article PDF–2.0M

Select item 692646313.

Endoplasmic reticulum stress differentially inhibits endoplasmic reticulum and inner nuclear membrane protein quality control degradation pathways

Bryce W. Buchanan, Adrian B. Mehrtash, Courtney L. Broshar, Avery M. Runnebohm, Brian J. Snow, Laura N. Scanameo, Mark Hochstrasser, Eric M. Rubenstein

J Biol Chem. 2019 Dec 20; 294(51): 19814–19830. Published online 2019 Nov 13. doi: 10.1074/jbc.RA119.010295

PMCID:: PMC6926463

Abstract Article PDF–3.7M

Select item 684668414.

At least two molecules of the RNA helicase Has1 are simultaneously present in pre-ribosomes during ribosome biogenesis

Sivakumar Vadivel Gnanasundram, Isabelle C Kos-Braun, Martin Koš

Nucleic Acids Res. 2019 Nov 18; 47(20): 10852–10864. Published online 2019 Sep 12. doi: 10.1093/nar/gkz767

PMCID:: PMC6846684

Abstract Article PDF–6.9M

Select item 655403415.

CAT tails drive degradation of stalled polypeptides on and off the ribosome

Cole S. Sitron, Onn Brandman

Nat Struct Mol Biol. Author manuscript; available in PMC 2019 Nov 27.

Published in final edited form as: Nat Struct Mol Biol. 2019 Jun; 26(6): 450–459. Published online 2019 May 27. doi: 10.1038/s41594-019-0230-1

PMCID:: PMC6554034

Abstract Article PDF–2.3M

Select item 639615516.

Collided ribosomes form a unique structural interface to induce Hel2‐driven quality control pathways

Ken Ikeuchi, Petr Tesina, Yoshitaka Matsuo, Takato Sugiyama, Jingdong Cheng, Yasushi Saeki, Keiji Tanaka, Thomas Becker, Roland Beckmann, Toshifumi Inada

EMBO J. 2019 Mar 1; 38(5): e100276. Published online 2019 Jan 4. doi: 10.15252/embj.2018100276

PMCID:: PMC6396155

Abstract Article PDF–9.8M

Select item 629136617.

The cellular economy of the Saccharomyces cerevisiae zinc proteome

Yirong Wang, Erin Weisenhorn, Colin MacDiarmid, Claudia Andreini, Michael Bucci, Janet Taggart, Lucia Banci, Jason Russell, Joshua J. Coon, David J. Eide

Metallomics. Author manuscript; available in PMC 2019 Dec 12.

Published in final edited form as: Metallomics. 2018 Dec 12; 10(12): 1755–1776. doi: 10.1039/c8mt00269j

PMCID:: PMC6291366

Abstract Article PDF–3.0M

Select item 621627718.

A role for Mog1 in H2Bub1 and H3K4me3 regulation affecting RNAPII transcription and mRNA export

Paula Oliete‐Calvo, Joan Serrano‐Quílez, Carme Nuño‐Cabanes, María E Pérez‐Martínez, Luis M Soares, Bernhard Dichtl, Stephen Buratowski, José E Pérez‐Ortín, Susana Rodríguez‐Navarro

EMBO Rep. 2018 Nov; 19(11): e45992. Published online 2018 Sep 24. doi: 10.15252/embr.201845992

PMCID:: PMC6216277

Abstract Article PDF–1.7M

Select item 621571319.

Systematic Analysis of Complex Genetic Interactions

Elena Kuzmin, Benjamin VanderSluis, Wen Wang, Guihong Tan, Raamesh Deshpande, Yiqun Chen, Matej Usaj, Attila Balint, Mojca Mattiazzi Usaj, Jolanda van Leeuwen, Elizabeth N. Koch, Carles Pons, Andrius J. Dagilis, Michael Pryszlak, Jason Zi Yang Wang, Julia Hanchard, Margot Riggi, Kaicong Xu, Hamed Heydari, Bryan-Joseph San Luis, Ermira Shuteriqi, Hongwei Zhu, Nydia Van Dyk, Sara Sharifpoor, Michael Costanzo, Robbie Loewith, Amy Caudy, Daniel Bolnick, Grant W. Brown, Brenda J. Andrews, Charles Boone, Chad L. Myers

Science. Author manuscript; available in PMC 2018 Nov 4.

Published in final edited form as: Science. 2018 Apr 20; 360(6386): eaao1729. doi: 10.1126/science.aao1729

PMCID:: PMC6215713

Abstract Article PDF–1.9M

Select item 605516420.

Conservation of mRNA quality control factor Ski7 and its diversification through changes in alternative splicing and gene duplication

Alexandra N. Marshall, Jaeil Han, Minseon Kim, Ambro van Hoof

Proc Natl Acad Sci U S A. 2018 Jul 17; 115(29): E6808–E6816. Published online 2018 Jul 2. doi: 10.1073/pnas.1801997115

PMCID:: PMC6055164

Abstract Article PDF–1.1M

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PMC Links for GEO Profiles (Select 30555909) (68)
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PMC Links for Taxonomy (Select 2059305) (1)
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Conserved Domain Links for Gene (Select 121214) (1)
Conserved Domains
MULTISPECIES: glutamate racemase [Enterococcus]
MULTISPECIES: glutamate racemase [Enterococcus]
gi|736703127|ref|WP_034708248.1|

Protein
yy91d06.s1 Soares_multiple_sclerosis_2NbHMSP Homo sapiens cDNA clone IMAGE:28090...
yy91d06.s1 Soares_multiple_sclerosis_2NbHMSP Homo sapiens cDNA clone IMAGE:280907 3', mRNA sequence
gi|1191993|gnl|dbEST|456356|gb|N508

Nucleotide

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