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Items: 1 to 20 of 71

1.
Protein interaction network revealed by quantitative proteomic analysis links TFIIB to multiple aspects of the transcription cycle
Michael J. O’Brien, Athar Ansari
Biochim Biophys Acta Proteins Proteom. Author manuscript; available in PMC 2024 Feb 16.
Published in final edited form as: Biochim Biophys Acta Proteins Proteom. 2024 Jan 1; 1872(1): 140968. Published online 2023 Oct 19. doi: 10.1016/j.bbapap.2023.140968
PMCID:
PMC10872477
AbstractArticlePDF–1.7M
2.
New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources
Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry
Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224
PMCID:
PMC9209811
AbstractArticlePDF–818K
3.
During FeS cluster biogenesis, ferredoxin and frataxin use overlapping binding sites on yeast cysteine desulfurase Nfs1
Marta A. Uzarska, Igor Grochowina, Joanna Soldek, Marcin Jelen, Brenda Schilke, Jaroslaw Marszalek, Elizabeth A. Craig, Rafal Dutkiewicz
J Biol Chem. 2022 Feb; 298(2): 101570. Published online 2022 Jan 11. doi: 10.1016/j.jbc.2022.101570
PMCID:
PMC8888459
AbstractArticlePDF–3.0M
4.
Systematic analysis of bypass suppression of essential genes
Jolanda van Leeuwen, Carles Pons, Guihong Tan, Jason Zi Wang, Jing Hou, Jochen Weile, Marinella Gebbia, Wendy Liang, Ermira Shuteriqi, Zhijian Li, Maykel Lopes, Matej Ušaj, Andreia Dos Santos Lopes, Natascha van Lieshout, Chad L Myers, Frederick P Roth, Patrick Aloy, Brenda J Andrews, Charles Boone
Mol Syst Biol. 2020 Sep; 16(9): e9828. Published online 2020 Sep 17. doi: 10.15252/msb.20209828
PMCID:
PMC7507402
AbstractArticlePDF–1.8M
5.
Cardiolipin-deficient cells have decreased levels of the iron–sulfur biogenesis protein frataxin
Yiran Li, Wenjia Lou, Alexander Grevel, Lena Böttinger, Zhuqing Liang, Jiajia Ji, Vinay A. Patil, Jenney Liu, Cunqi Ye, Maik Hüttemann, Thomas Becker, Miriam L. Greenberg
J Biol Chem. 2020 Aug 14; 295(33): 11928–11937. Published online 2020 Jul 6. doi: 10.1074/jbc.RA120.013960
PMCID:
PMC7450130
AbstractArticlePDF–1.5M
6.
The mitochondrial iron exporter genes MMT1 and MMT2 in yeast are transcriptionally regulated by Aft1 and Yap1
Liangtao Li, Sophie Bertram, Jerry Kaplan, Xuan Jia, Diane M. Ward
J Biol Chem. 2020 Feb 7; 295(6): 1716–1726. Published online 2020 Jan 2. doi: 10.1074/jbc.RA119.011154
PMCID:
PMC7008362
AbstractArticlePDF–2.9M
7.
Altered sterol metabolism in budding yeast affects mitochondrial iron–sulfur (Fe-S) cluster synthesis
Diane M. Ward, Opal S. Chen, Liangtao Li, Jerry Kaplan, Shah Alam Bhuiyan, Selvamuthu K. Natarajan, Martin Bard, James E. Cox
J Biol Chem. 2018 Jul 6; 293(27): 10782–10795. Published online 2018 May 17. doi: 10.1074/jbc.RA118.001781
PMCID:
PMC6036212
AbstractArticlePDF–4.2M
8.
Respiratory chain supercomplexes associate with the cysteine desulfurase complex of the iron–sulfur cluster assembly machinery
Lena Böttinger, Christoph U. Mårtensson, Jiyao Song, Nicole Zufall, Nils Wiedemann, Thomas Becker
Mol Biol Cell. 2018 Apr 1; 29(7): 776–785. doi: 10.1091/mbc.E17-09-0555
PMCID:
PMC5905291
AbstractArticlePDF–1.3M
9.
Cysteine desulfurase is regulated by phosphorylation of Nfs1 in yeast mitochondria
Agostinho G. Rocha, Simon A. B. Knight, Alok Pandey, Heeyong Yoon, Jayashree Pain, Debkumar Pain, Andrew Dancis
Mitochondrion. Author manuscript; available in PMC 2019 May 1.
Published in final edited form as: Mitochondrion. 2018 May; 40: 29–41. Published online 2017 Sep 21. doi: 10.1016/j.mito.2017.09.003
PMCID:
PMC5858965
AbstractArticlePDF–1.3M
10.
Genome-Wide Mapping of Decay Factor–mRNA Interactions in Yeast Identifies Nutrient-Responsive Transcripts as Targets of the Deadenylase Ccr4
Jason E. Miller, Liye Zhang, Haoyang Jiang, Yunfei Li, B. Franklin Pugh, Joseph C. Reese
G3 (Bethesda) 2018 Jan; 8(1): 315–330. Published online 2017 Nov 20. doi: 10.1534/g3.117.300415
PMCID:
PMC5765359
AbstractArticlePDF–2.2M
11.
Dihydropyrimidine-Thiones and Clioquinol Synergize To Target β-Amyloid Cellular Pathologies through a Metal-Dependent Mechanism
Daniel F. Tardiff, Lauren E. Brown, Xiaohui Yan, Richard Trilles, Nathan T. Jui, M. Inmaculada Barrasa, Kim A. Caldwell, Guy A. Caldwell, Scott E. Schaus, Susan Lindquist
ACS Chem Neurosci. Author manuscript; available in PMC 2018 Sep 20.
Published in final edited form as: ACS Chem Neurosci. 2017 Sep 20; 8(9): 2039–2055. Published online 2017 Jul 12. doi: 10.1021/acschemneuro.7b00187
PMCID:
PMC5705239
AbstractArticlePDF–2.1M
12.
Nfs1 cysteine desulfurase protein complexes and phosphorylation sites as assessed by mass spectrometry
Agostinho G. Rocha, Simon A.B. Knight, Alok Pandey, Heeyong Yoon, Jayashree Pain, Debkumar Pain, Andrew Dancis
Data Brief. 2017 Dec; 15: 775–799. Published online 2017 Oct 6. doi: 10.1016/j.dib.2017.09.068
PMCID:
PMC5675994
AbstractArticlePDF–1.0M
13.
Mitochondrial Ferredoxin Determines Vulnerability of Cells to Copper Excess
Cindy Vallières, Sara L. Holland, Simon V. Avery
Cell Chem Biol. 2017 Oct 19; 24(10): 1228–1237.e3. doi: 10.1016/j.chembiol.2017.08.005
PMCID:
PMC5654725
AbstractArticle
14.
Two plant-derived aporphinoid alkaloids exert their antifungal activity by disrupting mitochondrial iron-sulfur cluster biosynthesis
Siddharth K. Tripathi, Tao Xu, Qin Feng, Bharathi Avula, Xiaomin Shi, Xuewen Pan, Melanie M. Mask, Scott R. Baerson, Melissa R. Jacob, Ranga Rao Ravu, Shabana I. Khan, Xing-Cong Li, Ikhlas A. Khan, Alice M. Clark, Ameeta K. Agarwal
J Biol Chem. 2017 Oct 6; 292(40): 16578–16593. Published online 2017 Aug 18. doi: 10.1074/jbc.M117.781773
PMCID:
PMC5633121
AbstractArticlePDF–2.7M
15.
Nitric oxide prevents Aft1 activation and metabolic remodeling in frataxin-deficient yeast
David Alsina, Joaquim Ros, Jordi Tamarit
Redox Biol. 2018 Apr; 14: 131–141. Published online 2017 Sep 6. doi: 10.1016/j.redox.2017.09.001
PMCID:
PMC5602528
AbstractArticlePDF–1.2M
16.
The Genetic Landscape of a Cell
Michael Costanzo, Anastasia Baryshnikova, Jeremy Bellay, Yungil Kim, Eric D. Spear, Carolyn S. Sevier, Huiming Ding, Judice L.Y. Koh, Kiana Toufighi, Sara Mostafavi, Jeany Prinz, Robert P. St. Onge, Benjamin VanderSluis, Taras Makhnevych, Franco J. Vizeacoumar, Solmaz Alizadeh, Sondra Bahr, Renee L. Brost, Yiqun Chen, Murat Cokol, Raamesh Deshpande, Zhijian Li, Zhen-Yuan Lin, Wendy Liang, Michaela Marback, Jadine Paw, Bryan-Joseph San Luis, Ermira Shuteriqi, Amy Hin Yan Tong, Nydia van Dyk, Iain M. Wallace, Joseph A. Whitney, Matthew T. Weirauch, Guoqing Zhong, Hongwei Zhu, Walid A. Houry, Michael Brudno, Sasan Ragibizadeh, Balázs Papp, Csaba Pál, Frederick P. Roth, Guri Giaever, Corey Nislow, Olga G. Troyanskaya, Howard Bussey, Gary D. Bader, Anne-Claude Gingras, Quaid D. Morris, Philip M. Kim, Chris A. Kaiser, Chad L. Myers, Brenda J. Andrews, Charles Boone
Science. Author manuscript; available in PMC 2017 Sep 15.
Published in final edited form as: Science. 2010 Jan 22; 327(5964): 425–431. doi: 10.1126/science.1180823
PMCID:
PMC5600254
AbstractArticlePDF–2.4M
17.
Exploring Genetic Suppression Interactions on a Global Scale
Jolanda van Leeuwen, Carles Pons, Joseph C. Mellor, Takafumi N. Yamaguchi, Helena Friesen, John Koschwanez, Mojca Mattiazzi Ušaj, Maria Pechlaner, Mehmet Takar, Matej Ušaj, Benjamin VanderSluis, Kerry Andrusiak, Pritpal Bansal, Anastasia Baryshnikova, Claire Boone, Jessica Cao, Atina Cote, Marinella Gebbia, Gene Horecka, Ira Horecka, Elena Kuzmin, Nicole Legro, Wendy Liang, Natascha van Lieshout, Margaret McNee, Bryan-Joseph San Luis, Fatemeh Shaeri, Ermira Shuteriqi, Song Sun, Lu Yang, Ji-Young Youn, Michael Yuen, Michael Costanzo, Anne-Claude Gingras, Patrick Aloy, Chris Oostenbrink, Andrew Murray, Todd R. Graham, Chad L. Myers, Brenda J. Andrews, Frederick P. Roth, Charles Boone
Science. Author manuscript; available in PMC 2017 Aug 19.
Published in final edited form as: Science. 2016 Nov 4; 354(6312): aag0839. doi: 10.1126/science.aag0839
PMCID:
PMC5562937
AbstractArticlePDF–2.5M
18.
Zinc and the iron donor frataxin regulate oligomerization of the scaffold protein to form new Fe–S cluster assembly centers
B. K. Galeano, W. Ranatunga, O. Gakh, D. Y. Smith, IV, J. R. Thompson, G. Isaya
Metallomics. 2017 Jun 1; 9(6): 773–801. Published online 2017 May 26. doi: 10.1039/c7mt00089h
PMCID:
PMC5552075
AbstractArticle
19.
An optimized strategy to measure protein stability highlights differences between cold and hot unfolded states
Caterina Alfano, Domenico Sanfelice, Stephen R. Martin, Annalisa Pastore, Piero Andrea Temussi
Nat Commun. 2017; 8: 15428. Published online 2017 May 18. doi: 10.1038/ncomms15428
PMCID:
PMC5454340
AbstractArticlePDF–1.1M
20.
The Structure of the Complex between Yeast Frataxin and Ferrochelatase: CHARACTERIZATION AND PRE-STEADY STATE REACTION OF FERROUS IRON DELIVERY AND HEME SYNTHESIS
Christopher Söderberg, Mallory E. Gillam, Eva-Christina Ahlgren, Gregory A. Hunter, Oleksandr Gakh, Grazia Isaya, Gloria C. Ferreira, Salam Al-Karadaghi
J Biol Chem. 2016 May 27; 291(22): 11887–11898. Published online 2016 Mar 29. doi: 10.1074/jbc.M115.701128
PMCID:
PMC4882455
AbstractArticlePDF–2.2M

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