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Select item 112903561.

ALDH1A3-acetaldehyde metabolism potentiates transcriptional heterogeneity in melanoma

Yuting Lu, Jana Travnickova, Mihaly Badonyi, Florian Rambow, Andrea Coates, Zaid Khan, Jair Marques, Laura C. Murphy, Pablo Garcia-Martinez, Richard Marais, Pakavarin Louphrasitthiphol, Alex H.Y. Chan, Christopher J. Schofield, Alex von Kriegsheim, Joseph A. Marsh, Valeria Pavet, Owen J. Sansom, Robert S. Illingworth, E. Elizabeth Patton

Cell Rep. 2024 Jul 23; 43(7): 114406. Published online 2024 Jul 3. doi: 10.1016/j.celrep.2024.114406

PMCID:: PMC11290356

Abstract Article

Select item 102445132.

Comparative analysis of transcriptional changes in zebrafish cep290 and bbs2 mutants by RNA-seq reveals upregulation of inflammatory and stress-related pathways

Sarah E. Grabinski, Dhwani Parsana, Brian D. Perkins

Front Mol Neurosci. 2023; 16: 1148840. Published online 2023 May 24. doi: 10.3389/fnmol.2023.1148840

PMCID:: PMC10244513

Abstract Article PDF–2.1M

Select item 99106193.

Atf7ip and Setdb1 interaction orchestrates the hematopoietic stem and progenitor cell state with diverse lineage differentiation

Jiaxin Wu, Juan Li, Kang Chen, Guolong Liu, Yating Zhou, Wenqi Chen, Xiangzhan Zhu, Terri T. Ni, Bianhong Zhang, Daqing Jin, Dali Li, Lan Kang, Yuxuan Wu, Ping Zhu, Peng Xie, Tao P. Zhong

Proc Natl Acad Sci U S A. 2023 Jan 3; 120(1): e2209062120. Published online 2022 Dec 28. doi: 10.1073/pnas.2209062120

PMCID:: PMC9910619

Abstract Article PDF–3.7M

Select item 97505034.

SARS-CoV-2 viral protein ORF3A injures renal tubules by interacting with TRIM59 to induce STAT3 activation

Hong Cai, Ya Chen, Ye Feng, Morad Asadi, Lewis Kaufman, Kyung Lee, Thomas Kehrer, Lisa Miorin, Adolfo Garcia-Sastre, G. Luca Gusella, Leyi Gu, Zhaohui Ni, Shan Mou, John Cijiang He, Weibin Zhou

Mol Ther. 2023 Mar 1; 31(3): 774–787. Published online 2022 Dec 15. doi: 10.1016/j.ymthe.2022.12.008

PMCID:: PMC9750503

Abstract Article PDF–4.3M

Select item 96108995.

Cloning, Exogenous Expression and Function Analysis of Interferon–γ from Gadus macrocephalus

Jielan Jiang, Jie Gu, Aijun Zhan, Mingguang Mao, Yumeng Liu, Haishan Wang, Yunxiang Mao

Viruses. 2022 Oct; 14(10): 2304. Published online 2022 Oct 20. doi: 10.3390/v14102304

PMCID:: PMC9610899

Abstract Article PDF–1.9M

Select item 90191676.

Promoter Binding and Nuclear Retention Features of Zebrafish IRF Family Members in IFN Response

Li-Li An, Xiang Zhao, Xiu-Ying Gong, Yi-Lin Li, Zi-Ling Qu, Hao-Yu Sun, Wen-Hao Guo, Cheng Dan, Jian-Fang Gui, Yi-Bing Zhang

Front Immunol. 2022; 13: 861262. Published online 2022 Apr 6. doi: 10.3389/fimmu.2022.861262

PMCID:: PMC9019167

Abstract Article PDF–41M

Select item 89293247.

Neutrophil-Associated Responses to Vibrio cholerae Infection in a Natural Host Model

Dustin Farr, Dhrubajyoti Nag, Walter J. Chazin, Simone Harrison, Ryan Thummel, Xixia Luo, Saumya Raychaudhuri, Jeffrey H. Withey

Infect Immun. 2022 Mar; 90(3): e00466-21. Prepublished online 2022 Jan 24. Published online 2022 Mar 17. doi: 10.1128/iai.00466-21

PMCID:: PMC8929324

Abstract Article PDF–2.5M

Select item 88638238.

Identification and establishment of type IV interferon and the characterization of interferon-υ including its class II cytokine receptors IFN-υR1 and IL-10R2

Shan Nan Chen, Zhen Gan, Jing Hou, Yue Cong Yang, Lin Huang, Bei Huang, Su Wang, Pin Nie

Nat Commun. 2022; 13: 999. Published online 2022 Feb 22. doi: 10.1038/s41467-022-28645-6

PMCID:: PMC8863823

Abstract Article PDF–1.2M

Select item 85513829.

Pericardial Injection of Kainic Acid Induces a Chronic Epileptic State in Larval Zebrafish

Lise Heylen, Duc-Hung Pham, Ann-Sofie De Meulemeester, Éric Samarut, Adrianna Skiba, Daniëlle Copmans, Youcef Kazwiny, Pieter Vanden Berghe, Peter A. M. de Witte, Aleksandra Siekierska

Front Mol Neurosci. 2021; 14: 753936. Published online 2021 Oct 14. doi: 10.3389/fnmol.2021.753936

PMCID:: PMC8551382

Abstract Article PDF–3.8M

Select item 834956110.

Genetic disruption of zebrafish mab21l1 reveals a conserved role in eye development and affected pathways

Sarah E. Seese, Brett Deml, Sanaa Muheisen, Elena Sorokina, Elena V. Semina

Dev Dyn. Author manuscript; available in PMC 2022 Aug 1.

Published in final edited form as: Dev Dyn. 2021 Aug; 250(8): 1056–1073. Published online 2021 Mar 12. doi: 10.1002/dvdy.312

PMCID:: PMC8349561

Abstract Article PDF–2.9M

Select item 803915311.

uhrf1 and dnmt1 Loss Induces an Immune Response in Zebrafish Livers Due to Viral Mimicry by Transposable Elements

Elena Magnani, Filippo Macchi, Bhavani P. Madakashira, Chi Zhang, Fatima Alaydaroos, Kirsten C. Sadler

Front Immunol. 2021; 12: 627926. Published online 2021 Mar 29. doi: 10.3389/fimmu.2021.627926

Correction in:: Front Immunol. 2021; 12: 780739.

PMCID:: PMC8039153

Abstract Article PDF–3.2M

Select item 668774012.

Blood stem cell-forming haemogenic endothelium in zebrafish derives from arterial endothelium

Florian Bonkhofer, Rossella Rispoli, Philip Pinheiro, Monika Krecsmarik, Janina Schneider-Swales, Ingrid Ho Ching Tsang, Marella de Bruijn, Rui Monteiro, Tessa Peterkin, Roger Patient

Nat Commun. 2019; 10: 3577. Published online 2019 Aug 8. doi: 10.1038/s41467-019-11423-2

PMCID:: PMC6687740

Abstract Article PDF–3.1M

Select item 626125513.

Pericentromeric hypomethylation elicits an interferon response in an animal model of ICF syndrome

Srivarsha Rajshekar, Jun Yao, Paige K Arnold, Sara G Payne, Yinwen Zhang, Teresa V Bowman, Robert J Schmitz, John R Edwards, Mary Goll

eLife. 2018; 7: e39658. Published online 2018 Nov 28. doi: 10.7554/eLife.39658

PMCID:: PMC6261255

Abstract Article PDF–2.7M

Select item 624565514.

Critical Role for a Subset of Intestinal Macrophages in Shaping Gut Microbiota in Adult Zebrafish

Alison M. Earley, Christina L. Graves, Celia E. Shiau

Cell Rep. Author manuscript; available in PMC 2018 Nov 20.

Published in final edited form as: Cell Rep. 2018 Oct 9; 25(2): 424–436. doi: 10.1016/j.celrep.2018.09.025

PMCID:: PMC6245655

Abstract Article PDF–2.2M

Select item 559281115.

Loss of DNA methylation in zebrafish embryos activates retrotransposons to trigger antiviral signaling

Yelena Chernyavskaya, Raksha Mudbhary, Chi Zhang, Debra Tokarz, Vinitha Jacob, Smita Gopinath, Xiaochen Sun, Shuang Wang, Elena Magnani, Bhavani P. Madakashira, Jeffrey A. Yoder, Yujin Hoshida, Kirsten C. Sadler

Development. 2017 Aug 15; 144(16): 2925–2939. doi: 10.1242/dev.147629

PMCID:: PMC5592811

Abstract Article

Select item 507488216.

Loss of a Candidate Biliary Atresia Susceptibility Gene, add3a, Causes Biliary Developmental Defects in Zebrafish

Vivian Tang, Zenobia C. Cofer, Shuang Cui, Valerie Sapp, Kathleen M. Loomes, Randolph P. Matthews

J Pediatr Gastroenterol Nutr. 2016 Nov; 63(5): 524–530. Published online 2016 Oct 24. doi: 10.1097/MPG.0000000000001375

PMCID:: PMC5074882

Abstract Article PDF–1.1M

Select item 498220617.

Phylogenetic, syntenic, and tissue expression analysis of slc22 genes in zebrafish (Danio rerio)

Ivan Mihaljevic, Marta Popovic, Roko Zaja, Tvrtko Smital

BMC Genomics. 2016; 17: 626. Published online 2016 Aug 12. doi: 10.1186/s12864-016-2981-y

PMCID:: PMC4982206

Abstract Article PDF–1.4M

Select item 496162018.

Unexpected role of interferon-? in regulating neuronal connectivity and social behavior

Anthony J. Filiano, Yang Xu, Nicholas J. Tustison, Rachel L. Marsh, Wendy Baker, Igor Smirnov, Christopher C. Overall, Sachin P. Gadani, Stephen D. Turner, Zhiping Weng, Sayeda Najamussahar Peerzade, Hao Chen, Kevin S. Lee, Michael M. Scott, Mark P. Beenhakker, Vladimir Litvak, Jonathan Kipnis

Nature. Author manuscript; available in PMC 2017 Jan 21.

Published in final edited form as: Nature. 2016 Jul 21; 535(7612): 425–429. doi: 10.1038/nature18626

PMCID:: PMC4961620

Abstract Article PDF–4.3M

Select item 492809019.

Transcriptome comparison reveals a genetic network regulating the lower temperature limit in fish

Peng Hu, Mingli Liu, Yimeng Liu, Jinfeng Wang, Dong Zhang, Hongbo Niu, Shouwen Jiang, Jian Wang, Dongsheng Zhang, Bingshe Han, Qianghua Xu, Liangbiao Chen

Sci Rep. 2016; 6: 28952. Published online 2016 Jun 30. doi: 10.1038/srep28952

PMCID:: PMC4928090

Abstract Article PDF–1.7M

Select item 463413720.

RFX transcription factors are essential for hearing in mice

Ran Elkon, Beatrice Milon, Laura Morrison, Manan Shah, Sarath Vijayakumar, Manoj Racherla, Carmen C. Leitch, Lorna Silipino, Shadan Hadi, Michèle Weiss-Gayet, Emmanuèle Barras, Christoph D. Schmid, Aouatef Ait-Lounis, Ashley Barnes, Yang Song, David J. Eisenman, Efrat Eliyahu, Gregory I. Frolenkov, Scott E. Strome, Bénédicte Durand, Norann A. Zaghloul, Sherri M. Jones, Walter Reith, Ronna Hertzano

Nat Commun. 2015; 6: 8549. Published online 2015 Oct 15. doi: 10.1038/ncomms9549