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Select item 108724771.

Protein interaction network revealed by quantitative proteomic analysis links TFIIB to multiple aspects of the transcription cycle

Michael J. O’Brien, Athar Ansari

Biochim Biophys Acta Proteins Proteom. Author manuscript; available in PMC 2024 Feb 16.

Published in final edited form as: Biochim Biophys Acta Proteins Proteom. 2024 Jan 1; 1872(1): 140968. Published online 2023 Oct 19. doi: 10.1016/j.bbapap.2023.140968

PMCID:: PMC10872477

Abstract Article PDF–1.7M

Select item 107001382.

The social and structural architecture of the yeast protein interactome

André C. Michaelis, Andreas-David Brunner, Maximilian Zwiebel, Florian Meier, Maximilian T. Strauss, Isabell Bludau, Matthias Mann

Nature. 2023; 624(7990): 192–200. Published online 2023 Nov 15. doi: 10.1038/s41586-023-06739-5

PMCID:: PMC10700138

Abstract Article PDF–20M

Select item 92997883.

The Bur1 cyclin‐dependent kinase regulates telomere length in Saccharomyces cerevisiae

Carla J. Connelly, Sofia Vidal‐Cardenas, Stephanie Goldsmith, Carol W. Greider

Yeast. 2022 Mar; 39(3): 177–192. Published online 2021 Dec 2. doi: 10.1002/yea.3680

PMCID:: PMC9299788

Abstract Article PDF–651K

Select item 92098114.

New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources

Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry

Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224

PMCID:: PMC9209811

Abstract Article PDF–818K

Select item 87280305.

Suppression of cdc13-2-associated senescence by pif1-m2 requires Ku-mediated telomerase recruitment

Enikő Fekete-Szücs, Fernando R Rosas Bringas, Sonia Stinus, Michael Chang

G3 (Bethesda) 2022 Jan; 12(1): jkab360. Published online 2021 Oct 13. doi: 10.1093/g3journal/jkab360

PMCID:: PMC8728030

Abstract Article PDF–852K

Select item 86644806.

Suppression of telomere capping defects of Saccharomyces cerevisiae yku70 and yku80 mutants by telomerase

Cory L Holland, Brian A Sanderson, James K Titus, Monica F Weis, Angelica M Riojas, Eric Malczewskyj, Brian M Wasko, L Kevin Lewis

G3 (Bethesda) 2021 Dec; 11(12): jkab359. Published online 2021 Oct 13. doi: 10.1093/g3journal/jkab359

PMCID:: PMC8664480

Abstract Article PDF–1023K

Select item 85710637.

Systems-level effects of allosteric perturbations to a model molecular switch

Tina Perica, Christopher J. P. Mathy, Jiewei Xu, Gwendolyn M. Jang, Yang Zhang, Robyn Kaake, Noah Ollikainen, Hannes Braberg, Danielle L. Swaney, David G. Lambright, Mark J. S. Kelly, Nevan J. Krogan, Tanja Kortemme

Nature. Author manuscript; available in PMC 2022 May 1.

Published in final edited form as: Nature. 2021 Nov; 599(7883): 152–157. Published online 2021 Oct 13. doi: 10.1038/s41586-021-03982-6

PMCID:: PMC8571063

Abstract Article PDF–2.7M

Select item 84833528.

Antagonistic relationship of NuA4 with the non-homologous end-joining machinery at DNA damage sites

Salar Ahmad, Valérie Côté, Xue Cheng, Gaëlle Bourriquen, Vasileia Sapountzi, Mohammed Altaf, Jacques Côté

PLoS Genet. 2021 Sep; 17(9): e1009816. Published online 2021 Sep 20. doi: 10.1371/journal.pgen.1009816

PMCID:: PMC8483352

Abstract Article PDF–2.7M

Select item 83731429.

The conserved Tpk1 regulates non-homologous end joining double-strand break repair by phosphorylation of Nej1, a homolog of the human XLF

Matthew Jessulat, Shahreen Amin, Mohsen Hooshyar, Ramy Malty, Mohamed Taha Moutaoufik, Mara Zilocchi, Zoe Istace, Sadhna Phanse, Hiroyuki Aoki, Katayoun Omidi, Daniel Burnside, Bahram Samanfar, Khaled A Aly, Ashkan Golshani, Mohan Babu

Nucleic Acids Res. 2021 Aug 20; 49(14): 8145–8160. Published online 2021 Jul 9. doi: 10.1093/nar/gkab585

PMCID:: PMC8373142

Abstract Article PDF–2.0M

Select item 819177510.

FACT interacts with Set3 HDAC and fine-tunes GAL1 transcription in response to environmental stimulation

He Leng, Shaofeng Liu, Yang Lei, Yuantao Tang, Shijia Gu, Jiazhi Hu, She Chen, Jianxun Feng, Qing Li

Nucleic Acids Res. 2021 Jun 4; 49(10): 5502–5519. Published online 2021 May 8. doi: 10.1093/nar/gkab312

PMCID:: PMC8191775

Abstract Article PDF–3.0M

Select item 806601911.

Sir4 Deficiency Reverses Cell Senescence by Sub-Telomere Recombination

Jun Liu, Xiaojing Hong, Lihui Wang, Chao-Ya Liang, Jun-Ping Liu

Cells. 2021 Apr; 10(4): 778. Published online 2021 Apr 1. doi: 10.3390/cells10040778

PMCID:: PMC8066019

Abstract Article PDF–4.6M

Select item 786512812.

Replication-independent instability of Friedreich’s ataxia GAA repeats during chronological aging

Alexander J. Neil, Julia A. Hisey, Ishtiaque Quasem, Ryan J. McGinty, Marcin Hitczenko, Alexandra N. Khristich, Sergei M. Mirkin

Proc Natl Acad Sci U S A. 2021 Feb 2; 118(5): e2013080118. Published online 2021 Jan 25. doi: 10.1073/pnas.2013080118

PMCID:: PMC7865128

Abstract Article PDF–1.4M

Select item 771875113.

Comprehensive Synthetic Genetic Array Analysis of Alleles That Interact with Mutation of the Saccharomyces cerevisiae RecQ Helicases Hrq1 and Sgs1

Elsbeth Sanders, Phoebe A. Nguyen, Cody M. Rogers, Matthew L. Bochman

G3 (Bethesda) 2020 Dec; 10(12): 4359–4368. Published online 2020 Oct 28. doi: 10.1534/g3.120.401709

PMCID:: PMC7718751

Abstract Article PDF–1.2M

Select item 747466014.

Yeast ATM and ATR kinases use different mechanisms to spread histone H2A phosphorylation around a DNA double-strand break

Kevin Li, Gabriel Bronk, Jane Kondev, James E. Haber

Proc Natl Acad Sci U S A. 2020 Sep 1; 117(35): 21354–21363. Published online 2020 Aug 17. doi: 10.1073/pnas.2002126117

PMCID:: PMC7474660

Abstract Article PDF–1.8M

Select item 746772915.

Mechanisms underlying genome instability mediated by formation of foldback inversions in Saccharomyces cerevisiae

Bin-zhong Li, Christopher D Putnam, Richard David Kolodner

eLife. 2020; 9: e58223. Published online 2020 Aug 7. doi: 10.7554/eLife.58223

PMCID:: PMC7467729

Abstract Article PDF–1.6M

Select item 732543516.

A genetic interaction map centered on cohesin reveals auxiliary factors involved in sister chromatid cohesion in S. cerevisiae

Su Ming Sun, Amandine Batté, Mireille Elmer, Sophie C. van der Horst, Tibor van Welsem, Gordon Bean, Trey Ideker, Fred van Leeuwen, Haico van Attikum

J Cell Sci. 2020 May 15; 133(10): jcs237628. Published online 2020 May 22. doi: 10.1242/jcs.237628

PMCID:: PMC7325435

Abstract Article

Select item 724333717.

In vivo chromatin organization on native yeast telomeric regions is independent of a cis-telomere loopback conformation

Emeline Pasquier, Raymund J. Wellinger

Epigenetics Chromatin. 2020; 13: 23. Published online 2020 May 22. doi: 10.1186/s13072-020-00344-w

PMCID:: PMC7243337

Abstract Article PDF–4.7M

Select item 665047018.

Loss of Ku’s DNA end binding activity affects telomere length via destabilizing telomere-bound Est1 rather than altering TLC1 homeostasis

Laramie D. Lemon, Danna K. Morris, Alison A. Bertuch

Sci Rep. 2019; 9: 10607. Published online 2019 Jul 23. doi: 10.1038/s41598-019-46840-2

PMCID:: PMC6650470

Abstract Article PDF–2.1M

Select item 622211419.

A DNA nick at Ku-blocked double-strand break ends serves as an entry site for exonuclease 1 (Exo1) or Sgs1–Dna2 in long-range DNA end resection

Weibin Wang, James M. Daley, Youngho Kwon, Xiaoyu Xue, Danielle S. Krasner, Adam S. Miller, Kevin A. Nguyen, Elizabeth A. Williamson, Eun Yong Shim, Sang Eun Lee, Robert Hromas, Patrick Sung

J Biol Chem. 2018 Nov 2; 293(44): 17061–17069. Published online 2018 Sep 17. doi: 10.1074/jbc.RA118.004769