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Select item 107001381.

The social and structural architecture of the yeast protein interactome

André C. Michaelis, Andreas-David Brunner, Maximilian Zwiebel, Florian Meier, Maximilian T. Strauss, Isabell Bludau, Matthias Mann

Nature. 2023; 624(7990): 192–200. Published online 2023 Nov 15. doi: 10.1038/s41586-023-06739-5

PMCID:: PMC10700138

Abstract Article PDF–20M

Select item 92098112.

New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources

Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry

Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224

PMCID:: PMC9209811

Abstract Article PDF–818K

Select item 85489163.

Cnm1 mediates nucleus–mitochondria contact site formation in response to phospholipid levels

Michal Eisenberg-Bord, Naama Zung, Javier Collado, Layla Drwesh, Emma J. Fenech, Amir Fadel, Nili Dezorella, Yury S. Bykov, Doron Rapaport, Ruben Fernandez-Busnadiego, Maya Schuldiner

J Cell Biol. 2021 Nov 1; 220(11): e202104100. Published online 2021 Oct 25. doi: 10.1083/jcb.202104100

PMCID:: PMC8548916

Abstract Article PDF–6.5M

Select item 84493944.

Diphthamide promotes TOR signaling by increasing the translation of proteins in the TORC1 pathway

Yugang Zhang, Zhewang Lin, Julia Zhu, Miao Wang, Hening Lin

Proc Natl Acad Sci U S A. 2021 Sep 14; 118(37): e2104577118. Published online 2021 Sep 10. doi: 10.1073/pnas.2104577118

PMCID:: PMC8449394

Abstract Article PDF–1.0M

Select item 82516945.

Dph3 Enables Aerobic Diphthamide Biosynthesis by Donating One Iron Atom to Transform a [3Fe–4S] to a [4Fe–4S] Cluster in Dph1–Dph2

Yugang Zhang, Dan Su, Boris Dzikovski, Sean H. Majer, Rachael Coleman, Siddarth Chandrasekaran, Michael K. Fenwick, Brian R. Crane, Kyle M. Lancaster, Jack H. Freed, Hening Lin

J Am Chem Soc. 2021 Jun 30; 143(25): 9314–9319. Published online 2021 Jun 22. doi: 10.1021/jacs.1c03956

PMCID:: PMC8251694

Abstract Article PDF–1.7M

Select item 62913666.

The cellular economy of the Saccharomyces cerevisiae zinc proteome

Yirong Wang, Erin Weisenhorn, Colin MacDiarmid, Claudia Andreini, Michael Bucci, Janet Taggart, Lucia Banci, Jason Russell, Joshua J. Coon, David J. Eide

Metallomics. Author manuscript; available in PMC 2019 Dec 12.

Published in final edited form as: Metallomics. 2018 Dec 12; 10(12): 1755–1776. doi: 10.1039/c8mt00269j

PMCID:: PMC6291366

Abstract Article PDF–3.0M

Select item 61936767.

Importance of diphthamide modified EF2 for translational accuracy and competitive cell growth in yeast

Harmen Hawer, Koray Ütkür, Meike Arend, Klaus Mayer, Lorenz Adrian, Ulrich Brinkmann, Raffael Schaffrath

PLoS One. 2018; 13(10): e0205870. Published online 2018 Oct 18. doi: 10.1371/journal.pone.0205870

PMCID:: PMC6193676

Abstract Article PDF–2.7M

Select item 57286828.

Transcriptome-wide analysis of roles for tRNA modifications in translational regulation

Hsin-Jung Chou, Elisa Donnard, H. Tobias Gustafsson, Manuel Garber, Oliver J. Rando

Mol Cell. Author manuscript; available in PMC 2018 Dec 7.

Published in final edited form as: Mol Cell. 2017 Dec 7; 68(5): 978–992.e4. Published online 2017 Nov 30. doi: 10.1016/j.molcel.2017.11.002

PMCID:: PMC5728682

Abstract Article PDF–3.0M

Select item 56618859.

A global interaction network maps a wiring diagram of cellular function

Michael Costanzo, Benjamin VanderSluis, Elizabeth N. Koch, Anastasia Baryshnikova, Carles Pons, Guihong Tan, Wen Wang, Matej Usaj, Julia Hanchard, Susan D. Lee, Vicent Pelechano, Erin B. Styles, Maximilian Billmann, Jolanda van Leeuwen, Nydia van Dyk, Zhen-Yuan Lin, Elena Kuzmin, Justin Nelson, Jeff S. Piotrowski, Tharan Srikumar, Sondra Bahr, Yiqun Chen, Raamesh Deshpande, Christoph F. Kurat, Sheena C. Li, Zhijian Li, Mojca Mattiazzi Usaj, Hiroki Okada, Natasha Pascoe, Bryan-Joseph San Luis, Sara Sharifpoor, Emira Shuteriqi, Scott W. Simpkins, Jamie Snider, Harsha Garadi Suresh, Yizhao Tan, Hongwei Zhu, Noel Malod-Dognin, Vuk Janjic, Natasa Przulj, Olga G. Troyanskaya, Igor Stagljar, Tian Xia, Yoshikazu Ohya, Anne-Claude Gingras, Brian Raught, Michael Boutros, Lars M. Steinmetz, Claire L. Moore, Adam P. Rosebrock, Amy A. Caudy, Chad L. Myers, Brenda Andrews, Charles Boone

Science. Author manuscript; available in PMC 2017 Oct 30.

Published in final edited form as: Science. 2016 Sep 23; 353(6306): aaf1420. doi: 10.1126/science.aaf1420

PMCID:: PMC5661885

Abstract Article PDF–2.6M

Select item 543513910.

A systematic genetic screen for genes involved in sensing inorganic phosphate availability in Saccharomyces cerevisiae

Joonhyuk Choi, Abbhirami Rajagopal, Yi-Fan Xu, Joshua D. Rabinowitz, Erin K. O’Shea

PLoS One. 2017; 12(5): e0176085. Published online 2017 May 17. doi: 10.1371/journal.pone.0176085

PMCID:: PMC5435139

Abstract Article PDF–1.9M

Select item 511036511.

Cbr1 is a Dph3 reductase required for the tRNA wobble uridine modification

Zhewang Lin, Min Dong, Yugang Zhang, Eunyoung Alisa Lee, Hening Lin

Nat Chem Biol. Author manuscript; available in PMC 2017 Apr 3.

Published in final edited form as: Nat Chem Biol. 2016 Dec; 12(12): 995–997. Published online 2016 Oct 3. doi: 10.1038/nchembio.2190

PMCID:: PMC5110365

Abstract Article PDF–676K

Select item 505508312.

Functional Metabolomics Describes the Yeast Biosynthetic Regulome

Michael Mülleder, Enrica Calvani, Mohammad Tauqeer Alam, Richard Kangda Wang, Florian Eckerstorfer, Aleksej Zelezniak, Markus Ralser

Cell. 2016 Oct 6; 167(2): 553–565.e12. doi: 10.1016/j.cell.2016.09.007

PMCID:: PMC5055083

Abstract Article PDF–3.9M

Select item 469413913.

Yeast Elongator protein Elp1p does not undergo proteolytic processing in exponentially growing cells

Hao Xu, Joakim Bygdell, Gunnar Wingsle, Anders S. Byström

Microbiologyopen. 2015 Dec; 4(6): 867–878. Published online 2015 Sep 25. doi: 10.1002/mbo3.285

PMCID:: PMC4694139

Abstract Article PDF–316K

Select item 398547814.

Dph3 Is an Electron Donor for Dph1-Dph2 in the First Step of Eukaryotic Diphthamide Biosynthesis

Min Dong, Xiaoyang Su, Boris Dzikovski, Emily E. Dando, Xuling Zhu, Jintang Du, Jack H. Freed, Hening Lin

J Am Chem Soc. 2014 Feb 5; 136(5): 1754–1757. Published online 2014 Jan 14. doi: 10.1021/ja4118957

PMCID:: PMC3985478

Abstract Article PDF–1.9M

Select item 387398115.

Whi3, an S. cerevisiae RNA-Binding Protein, Is a Component of Stress Granules That Regulates Levels of Its Target mRNAs

Kristen J. Holmes, Daniel M. Klass, Evan L. Guiney, Martha S. Cyert

PLoS One. 2013; 8(12): e84060. Published online 2013 Dec 27. doi: 10.1371/journal.pone.0084060

PMCID:: PMC3873981

Abstract Article PDF–11M

Select item 370927216.

Insights into Diphthamide, Key Diphtheria Toxin Effector

Wael Abdel-Fattah, Viktor Scheidt, Shanow Uthman, Michael J. R. Stark, Raffael Schaffrath

Toxins (Basel) 2013 May; 5(5): 958–968. Published online 2013 May 3. doi: 10.3390/toxins5050958

PMCID:: PMC3709272

Abstract Article PDF–1001K

Select item 361359017.

Genome-wide bimolecular fluorescence complementation analysis of SUMO interactome in yeast

Min-Kyung Sung, Gyubum Lim, Dae-Gwan Yi, Yeon Ji Chang, Eun Bin Yang, KiYoung Lee, Won-Ki Huh

Genome Res. 2013 Apr; 23(4): 736–746. doi: 10.1101/gr.148346.112

PMCID:: PMC3613590

Abstract Article PDF–1.7M

Select item 358513018.

The Amidation Step of Diphthamide Biosynthesis in Yeast Requires DPH6, a Gene Identified through Mining the DPH1-DPH5 Interaction Network

Shanow Uthman, Christian Bär, Viktor Scheidt, Shihui Liu, Sara ten Have, Flaviano Giorgini, Michael J. R. Stark, Raffael Schaffrath

PLoS Genet. 2013 Feb; 9(2): e1003334. Published online 2013 Feb 28. doi: 10.1371/journal.pgen.1003334

PMCID:: PMC3585130

Abstract Article PDF–1.9M

Select item 326467619.

YBR246W is required for the third step of diphthamide biosynthesis

Xiaoyang Su, Wei Chen, Wankyu Lee, Hong Jiang, Sheng Zhang, Hening Lin

J Am Chem Soc. Author manuscript; available in PMC 2013 Jan 18.

Published in final edited form as: J Am Chem Soc. 2012 Jan 18; 134(2): 773–776. Published online 2011 Dec 21. doi: 10.1021/ja208870a

PMCID:: PMC3264676

Abstract Article PDF–1.1M

Select item 309130120.

Defining potentially conserved RNA regulons of homologous zinc-finger RNA-binding proteins

Tanja Scherrer, Christian Femmer, Ralph Schiess, Ruedi Aebersold, André P Gerber

Genome Biol. 2011; 12(1): R3. Published online 2011 Jan 13. doi: 10.1186/gb-2011-12-1-r3

PMCID:: PMC3091301

Abstract Article PDF–1.3M

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