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Select item 108724771.

Protein interaction network revealed by quantitative proteomic analysis links TFIIB to multiple aspects of the transcription cycle

Michael J. O’Brien, Athar Ansari

Biochim Biophys Acta Proteins Proteom. Author manuscript; available in PMC 2024 Feb 16.

Published in final edited form as: Biochim Biophys Acta Proteins Proteom. 2024 Jan 1; 1872(1): 140968. Published online 2023 Oct 19. doi: 10.1016/j.bbapap.2023.140968

PMCID:: PMC10872477

Abstract Article PDF–1.7M

Select item 107988582.

Fast-evolving cofactors regulate the role of HEATR5 complexes in intra-Golgi trafficking

Lucas J. Marmorale, Huan Jin, Thomas G. Reidy, Brandon Palomino-Alonso, Christopher J. Zysnarski, Fatima Jordan-Javed, Sagar Lahiri, Mara C. Duncan

J Cell Biol. 2024 Mar 4; 223(3): e202309047. Published online 2024 Jan 19. doi: 10.1083/jcb.202309047

PMCID:: PMC10798858

Abstract Article PDF–6.4M

Select item 107001383.

The social and structural architecture of the yeast protein interactome

André C. Michaelis, Andreas-David Brunner, Maximilian Zwiebel, Florian Meier, Maximilian T. Strauss, Isabell Bludau, Matthias Mann

Nature. 2023; 624(7990): 192–200. Published online 2023 Nov 15. doi: 10.1038/s41586-023-06739-5

PMCID:: PMC10700138

Abstract Article PDF–20M

Select item 105166424.

ISW1a modulates cohesin distribution in centromeric and pericentromeric regions

Ireneusz Litwin, Małgorzata Nowicka, Katarzyna Markowska, Ewa Maciaszczyk-Dziubińska, Paulina Tomaszewska, Robert Wysocki, Karol Kramarz

Nucleic Acids Res. 2023 Sep 22; 51(17): 9101–9121. Published online 2023 Jul 24. doi: 10.1093/nar/gkad612

PMCID:: PMC10516642

Abstract Article PDF–2.8M

Select item 103083735.

Ubx5‐Cdc48 assists the protease Wss1 at DNA‐protein crosslink sites in yeast

Audrey Noireterre, Nataliia Serbyn, Ivona Bagdiul, Françoise Stutz

EMBO J. 2023 Jul; 42(13): e113609. Published online 2023 May 5. doi: 10.15252/embj.2023113609

PMCID:: PMC10308373

Abstract Article PDF–8.0M

Select item 102014356.

Flap endonuclease Rad27 cleaves the RNA of R-loop structures to suppress telomere recombination

Chia-Chun Liu, Hsin-Ru Chan, Guan-Chin Su, Yan-Zhu Hsieh, Kai-Hang Lei, Tomoka Kato, Tai-Yuan Yu, Yu-wen Kao, Tzu-Hao Cheng, Peter Chi, Jing-Jer Lin

Nucleic Acids Res. 2023 May 22; 51(9): 4398–4414. Published online 2023 Mar 31. doi: 10.1093/nar/gkad236

PMCID:: PMC10201435

Abstract Article PDF–8.4M

Select item 101537527.

Exo1 protects DNA nicks from ligation to promote crossover formation during meiosis

Michael Gioia, Lisette Payero, Sagar Salim, Ghanim Fajish V., Amamah F. Farnaz, Gianno Pannafino, Jun Jie Chen, V. P. Ajith, Sherikat Momoh, Michelle Scotland, Vandana Raghavan, Carol M. Manhart, Akira Shinohara, K. T. Nishant, Eric Alani

PLoS Biol. 2023 Apr; 21(4): e3002085. Published online 2023 Apr 20. doi: 10.1371/journal.pbio.3002085

PMCID:: PMC10153752

Abstract Article PDF–2.3M

Select item 98590408.

Flap Endonuclease 1 Endonucleolytically Processes RNA to Resolve R-Loops through DNA Base Excision Repair

Eduardo E. Laverde, Aris A. Polyzos, Pawlos P. Tsegay, Mohammad Shaver, Joshua D. Hutcheson, Lata Balakrishnan, Cynthia T. McMurray, Yuan Liu

Genes (Basel) 2023 Jan; 14(1): 98. Published online 2022 Dec 29. doi: 10.3390/genes14010098

PMCID:: PMC9859040

Abstract Article PDF–4.3M

Select item 96309869.

A balancing act: interactions within NuA4/TIP60 regulate picNuA4 function in Saccharomyces cerevisiae and humans

Phoebe Y T Lu, Alyssa C Kirlin, Maria J Aristizabal, Hilary T Brewis, Nancy Lévesque, Dheva T Setiaputra, Nikita Avvakumov, Joris J Benschop, Marian Groot Koerkamp, Frank C P Holstege, Nevan J Krogan, Calvin K Yip, Jacques Côté, Michael S Kobor

Genetics. 2022 Nov; 222(3): iyac136. Published online 2022 Sep 6. doi: 10.1093/genetics/iyac136

PMCID:: PMC9630986

Abstract Article PDF–2.2M

Select item 933929310.

Complex mutation profiles in mismatch repair and ribonucleotide reductase mutants reveal novel repair substrate specificity of MutS homolog (MSH) complexes

Natalie A Lamb, Jonathan E Bard, Raphael Loll-Krippleber, Grant W Brown, Jennifer A Surtees

Genetics. 2022 Aug; 221(4): iyac092. Published online 2022 Jun 10. doi: 10.1093/genetics/iyac092

PMCID:: PMC9339293

Abstract Article PDF–7.9M

Select item 920981111.

New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources

Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry

Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224

PMCID:: PMC9209811

Abstract Article PDF–818K

Select item 885282112.

Error-prone, stress-induced 3’ flap-based Okazaki fragment maturation supports cell survival

Haitao Sun, Zhaoning Lu, Amanpreet Singh, Yajing Zhou, Eric Zheng, Mian Zhou, Jinhui Wang, Xiwei Wu, Zunsong Hu, Zhaohui Gu, Judith L. Campbell, Li Zheng, Binghui Shen

Science. Author manuscript; available in PMC 2022 Feb 17.

Published in final edited form as: Science. 2021 Dec 3; 374(6572): 1252–1258. Published online 2021 Dec 2. doi: 10.1126/science.abj1013

PMCID:: PMC8852821

Abstract Article PDF–1.6M

Select item 868279413.

VID22 counteracts G-quadruplex-induced genome instability

Elena Galati, Maria C Bosio, Daniele Novarina, Matteo Chiara, Giulia M Bernini, Alessandro M Mozzarelli, Maria L García-Rubio, Belén Gómez-González, Andrés Aguilera, Thomas Carzaniga, Marco Todisco, Tommaso Bellini, Giulia M Nava, Gianmaria Frigè, Sarah Sertic, David S Horner, Anastasia Baryshnikova, Caterina Manzari, Anna M D’Erchia, Graziano Pesole, Grant W Brown, Marco Muzi-Falconi, Federico Lazzaro

Nucleic Acids Res. 2021 Dec 16; 49(22): 12785–12804. Published online 2021 Dec 6. doi: 10.1093/nar/gkab1156

PMCID:: PMC8682794

Abstract Article PDF–8.0M

Select item 857691714.

Tubulin isotypes optimize distinct spindle positioning mechanisms during yeast mitosis

Emmanuel T. Nsamba, Abesh Bera, Michael Costanzo, Charles Boone, Mohan L. Gupta, Jr.

J Cell Biol. 2021 Dec 6; 220(12): e202010155. Published online 2021 Nov 5. doi: 10.1083/jcb.202010155

PMCID:: PMC8576917

Abstract Article PDF–7.4M

Select item 851195015.

The histone chaperone Spt6 is required for normal recruitment of the capping enzyme Abd1 to transcribed regions

Rajaraman Gopalakrishnan, Fred Winston

J Biol Chem. 2021 Oct; 297(4): 101205. Published online 2021 Sep 17. doi: 10.1016/j.jbc.2021.101205

PMCID:: PMC8511950

Abstract Article PDF–3.1M

Select item 845827616.

Rad27 and Exo1 function in different excision pathways for mismatch repair in Saccharomyces cerevisiae

Felipe A. Calil, Bin-Zhong Li, Kendall A. Torres, Katarina Nguyen, Nikki Bowen, Christopher D. Putnam, Richard D. Kolodner

Nat Commun. 2021; 12: 5568. Published online 2021 Sep 22. doi: 10.1038/s41467-021-25866-z

PMCID:: PMC8458276

Abstract Article PDF–1.0M

Select item 842120417.

Investigation of RNA metabolism through large-scale genetic interaction profiling in yeast

Laurence Decourty, Christophe Malabat, Emmanuel Frachon, Alain Jacquier, Cosmin Saveanu

Nucleic Acids Res. 2021 Sep 7; 49(15): 8535–8555. Published online 2021 Aug 6. doi: 10.1093/nar/gkab680

PMCID:: PMC8421204

Abstract Article PDF–2.9M

Select item 835352618.

The RNA-binding protein Puf5 contributes to buffering of mRNA upon chromatin-mediated changes in nascent transcription

David Z. Kochan, Julia S. P. Mawer, Jennifer Massen, Kiril Tishinov, Swati Parekh, Martin Graef, Anne Spang, Peter Tessarz

J Cell Sci. 2021 Aug 1; 134(15): jcs259051. Published online 2021 Aug 5. doi: 10.1242/jcs.259051

PMCID:: PMC8353526

Abstract Article

Select item 804059819.

Modeling DNA trapping of anticancer therapeutic targets using missense mutations identifies dominant synthetic lethal interactions

Akil Hamza, Leanne Amitzi, Lina Ma, Maureen R. M. Driessen, Nigel J. O'Neil, Philip Hieter

Proc Natl Acad Sci U S A. 2021 Apr 6; 118(14): e2100240118. Published online 2021 Mar 29. doi: 10.1073/pnas.2100240118

PMCID:: PMC8040598

Abstract Article PDF–1.5M

Select item 798421820.

The secondary‐structured DNA‐binding activity of Dna2 endonuclease/helicase is critical to cell growth under replication stress

Soyeong Park, Nargis Karatayeva, Annie Albert Demin, Palinda Ruvan Munashingha, Yeon‐Soo Seo

FEBS J. 2021 Feb; 288(4): 1224–1242. Published online 2020 Jul 19. doi: 10.1111/febs.15475

PMCID:: PMC7984218

Abstract Article PDF–5.2M

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PMC Links for GEO Profiles (Select 34645572) (214)
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Mus musculus sphingosine-1-phosphate receptor 4 (S1pr4), mRNA
Mus musculus sphingosine-1-phosphate receptor 4 (S1pr4), mRNA
gi|289546498|ref|NM_010102.2|

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