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Select item 112538841.

Uncovering the Role of the Yeast Lysine Acetyltransferase NuA4 in the Regulation of Nuclear Shape and Lipid Metabolism

Sarah Jane Laframboise, Lauren F. Deneault, Alix Denoncourt, Michael Downey, Kristin Baetz

Mol Cell Biol. 2024; 44(7): 273–288. Published online 2024 Jul 4. doi: 10.1080/10985549.2024.2366206

PMCID:: PMC11253884

Abstract Article PDF–3.2M

Select item 109725602.

Membrane contact sites regulate vacuolar fission via sphingolipid metabolism

Kazuki Hanaoka, Kensuke Nishikawa, Atsuko Ikeda, Philipp Schlarmann, Saku Sasaki, Sotaro Fujii, Sayumi Yamashita, Aya Nakaji, Kouichi Funato

eLife. 2024; 12: RP89938. Published online 2024 Mar 27. doi: 10.7554/eLife.89938

PMCID:: PMC10972560

Abstract Article PDF–5.2M

Select item 107001383.

The social and structural architecture of the yeast protein interactome

André C. Michaelis, Andreas-David Brunner, Maximilian Zwiebel, Florian Meier, Maximilian T. Strauss, Isabell Bludau, Matthias Mann

Nature. 2023; 624(7990): 192–200. Published online 2023 Nov 15. doi: 10.1038/s41586-023-06739-5

PMCID:: PMC10700138

Abstract Article PDF–20M

Select item 101610634.

Structures of Vac8-containing protein complexes reveal the underlying mechanism by which Vac8 regulates multiple cellular processes

Hyejin Kim, Jihyeon Park, Hyunwoo Kim, Naho Ko, Jumi Park, Eunhong Jang, So Young Yoon, Joyce Anne R. Diaz, Changwook Lee, Youngsoo Jun

Proc Natl Acad Sci U S A. 2023 May 2; 120(18): e2211501120. Published online 2023 Apr 24. doi: 10.1073/pnas.2211501120

PMCID:: PMC10161063

Abstract Article PDF–4.0M

Select item 97441855.

Nutrient Signaling, Stress Response, and Inter-organelle Communication Are Non-canonical Determinants of Cell Fate

N. Ezgi Wood, Piya Kositangool, Hanaa Hariri, Ashley J. Marchand, W. Mike Henne

Cell Rep. Author manuscript; available in PMC 2022 Dec 12.

Published in final edited form as: Cell Rep. 2020 Dec 1; 33(9): 108446. doi: 10.1016/j.celrep.2020.108446

PMCID:: PMC9744185

Abstract Article PDF–3.2M

Select item 92098116.

New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources

Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry

Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224

PMCID:: PMC9209811

Abstract Article PDF–818K

Select item 80578127.

Glucose restriction drives spatial reorganization of mevalonate metabolism

Sean Rogers, Hanaa Hariri, N Ezgi Wood, Natalie Ortiz Speer, W Mike Henne

eLife. 2021; 10: e62591. Published online 2021 Apr 7. doi: 10.7554/eLife.62591

PMCID:: PMC8057812

Abstract Article PDF–2.7M

Select item 77187518.

Comprehensive Synthetic Genetic Array Analysis of Alleles That Interact with Mutation of the Saccharomyces cerevisiae RecQ Helicases Hrq1 and Sgs1

Elsbeth Sanders, Phoebe A. Nguyen, Cody M. Rogers, Matthew L. Bochman

G3 (Bethesda) 2020 Dec; 10(12): 4359–4368. Published online 2020 Oct 28. doi: 10.1534/g3.120.401709

PMCID:: PMC7718751

Abstract Article PDF–1.2M

Select item 75637499.

Nuclear envelope–vacuole contacts mitigate nuclear pore complex assembly stress

Christopher L. Lord, Susan R. Wente

J Cell Biol. 2020 Dec 7; 219(12): e202001165. Published online 2020 Oct 14. doi: 10.1083/jcb.202001165

PMCID:: PMC7563749

Abstract Article PDF–7.1M

Select item 756021610.

AP‐3 vesicle uncoating occurs after HOPS‐dependent vacuole tethering

Jannis Schoppe, Muriel Mari, Erdal Yavavli, Kathrin Auffarth, Margarita Cabrera, Stefan Walter, Florian Fröhlich, Christian Ungermann

EMBO J. 2020 Oct 15; 39(20): e105117. Published online 2020 Aug 25. doi: 10.15252/embj.2020105117

PMCID:: PMC7560216

Abstract Article PDF–3.6M

Select item 746949411.

Quaternary structures of Vac8 differentially regulate the Cvt and PMN pathways

Jumi Park, Hye-In Kim, Hanbin Jeong, Miriam Lee, Se Hwan Jang, So Young Yoon, Hyejin Kim, Zee-Yong Park, Youngsoo Jun, Changwook Lee

Autophagy. 2020; 16(6): 991–1006. Published online 2019 Sep 12. doi: 10.1080/15548627.2019.1659615

PMCID:: PMC7469494

Abstract Article PDF–7.6M

Select item 689901712.

Vac8 spatially confines autophagosome formation at the vacuole in S. cerevisiae

David M. Hollenstein, Rubén Gómez-Sánchez, Akif Ciftci, Franziska Kriegenburg, Muriel Mari, Raffaela Torggler, Mariya Licheva, Fulvio Reggiori, Claudine Kraft

J Cell Sci. 2019 Nov 15; 132(22): jcs235002. Published online 2019 Nov 14. doi: 10.1242/jcs.235002

PMCID:: PMC6899017

Abstract Article

Select item 634717013.

Effect of Sec61 interaction with Mpd1 on endoplasmic reticulum-associated degradation

Fabio Pereira, Mandy Rettel, Frank Stein, Mikhail M. Savitski, Ian Collinson, Karin Römisch

PLoS One. 2019; 14(1): e0211180. Published online 2019 Jan 25. doi: 10.1371/journal.pone.0211180

PMCID:: PMC6347170

Abstract Article PDF–16M

Select item 608093214.

CLIP and cohibin separate rDNA from nucleolar proteins destined for degradation by nucleophagy

Md. Golam Mostofa, Muhammad Arifur Rahman, Naoki Koike, Akter MST Yeasmin, Nafisa Islam, Talukdar Muhammad Waliullah, Shun Hosoyamada, Mitsugu Shimobayashi, Takehiko Kobayashi, Michael N. Hall, Takashi Ushimaru

J Cell Biol. 2018 Aug 6; 217(8): 2675–2690. doi: 10.1083/jcb.201706164

PMCID:: PMC6080932

Abstract Article PDF–3.1M

Select item 576535915.

Genome-Wide Mapping of Decay Factor–mRNA Interactions in Yeast Identifies Nutrient-Responsive Transcripts as Targets of the Deadenylase Ccr4

Jason E. Miller, Liye Zhang, Haoyang Jiang, Yunfei Li, B. Franklin Pugh, Joseph C. Reese

G3 (Bethesda) 2018 Jan; 8(1): 315–330. Published online 2017 Nov 20. doi: 10.1534/g3.117.300415

PMCID:: PMC5765359

Abstract Article PDF–2.2M

Select item 575728316.

Lipid droplet biogenesis is spatially coordinated at ER–vacuole contacts under nutritional stress

Hanaa Hariri, Sean Rogers, Rupali Ugrankar, Yang Lydia Liu, J Ryan Feathers, W Mike Henne

EMBO Rep. 2018 Jan; 19(1): 57–72. Published online 2017 Nov 16. doi: 10.15252/embr.201744815

PMCID:: PMC5757283

Abstract Article PDF–3.3M

Select item 566188517.

A global interaction network maps a wiring diagram of cellular function

Michael Costanzo, Benjamin VanderSluis, Elizabeth N. Koch, Anastasia Baryshnikova, Carles Pons, Guihong Tan, Wen Wang, Matej Usaj, Julia Hanchard, Susan D. Lee, Vicent Pelechano, Erin B. Styles, Maximilian Billmann, Jolanda van Leeuwen, Nydia van Dyk, Zhen-Yuan Lin, Elena Kuzmin, Justin Nelson, Jeff S. Piotrowski, Tharan Srikumar, Sondra Bahr, Yiqun Chen, Raamesh Deshpande, Christoph F. Kurat, Sheena C. Li, Zhijian Li, Mojca Mattiazzi Usaj, Hiroki Okada, Natasha Pascoe, Bryan-Joseph San Luis, Sara Sharifpoor, Emira Shuteriqi, Scott W. Simpkins, Jamie Snider, Harsha Garadi Suresh, Yizhao Tan, Hongwei Zhu, Noel Malod-Dognin, Vuk Janjic, Natasa Przulj, Olga G. Troyanskaya, Igor Stagljar, Tian Xia, Yoshikazu Ohya, Anne-Claude Gingras, Brian Raught, Michael Boutros, Lars M. Steinmetz, Claire L. Moore, Adam P. Rosebrock, Amy A. Caudy, Chad L. Myers, Brenda Andrews, Charles Boone

Science. Author manuscript; available in PMC 2017 Oct 30.

Published in final edited form as: Science. 2016 Sep 23; 353(6306): aaf1420. doi: 10.1126/science.aaf1420

PMCID:: PMC5661885

Abstract Article PDF–2.6M

Select item 560025418.

The Genetic Landscape of a Cell

Michael Costanzo, Anastasia Baryshnikova, Jeremy Bellay, Yungil Kim, Eric D. Spear, Carolyn S. Sevier, Huiming Ding, Judice L.Y. Koh, Kiana Toufighi, Sara Mostafavi, Jeany Prinz, Robert P. St. Onge, Benjamin VanderSluis, Taras Makhnevych, Franco J. Vizeacoumar, Solmaz Alizadeh, Sondra Bahr, Renee L. Brost, Yiqun Chen, Murat Cokol, Raamesh Deshpande, Zhijian Li, Zhen-Yuan Lin, Wendy Liang, Michaela Marback, Jadine Paw, Bryan-Joseph San Luis, Ermira Shuteriqi, Amy Hin Yan Tong, Nydia van Dyk, Iain M. Wallace, Joseph A. Whitney, Matthew T. Weirauch, Guoqing Zhong, Hongwei Zhu, Walid A. Houry, Michael Brudno, Sasan Ragibizadeh, Balázs Papp, Csaba Pál, Frederick P. Roth, Guri Giaever, Corey Nislow, Olga G. Troyanskaya, Howard Bussey, Gary D. Bader, Anne-Claude Gingras, Quaid D. Morris, Philip M. Kim, Chris A. Kaiser, Chad L. Myers, Brenda J. Andrews, Charles Boone

Science. Author manuscript; available in PMC 2017 Sep 15.

Published in final edited form as: Science. 2010 Jan 22; 327(5964): 425–431. doi: 10.1126/science.1180823

PMCID:: PMC5600254

Abstract Article PDF–2.4M

Select item 559294519.

A Functional Link Between Bir1 and the Saccharomyces cerevisiae Ctf19 Kinetochore Complex Revealed Through Quantitative Fitness Analysis

Vasso Makrantoni, Adam Ciesiolka, Conor Lawless, Josefin Fernius, Adele Marston, David Lydall, Michael J. R. Stark

G3 (Bethesda) 2017 Sep; 7(9): 3203–3215. Published online 2017 Jul 28. doi: 10.1534/g3.117.300089

PMCID:: PMC5592945

Abstract Article PDF–1.7M

Select item 546868120.

Mechanistic insight into the nucleus–vacuole junction based on the Vac8p–Nvj1p crystal structure

Hanbin Jeong, Jumi Park, Hye-In Kim, Miriam Lee, Young-Joon Ko, Sanghwa Lee, Youngsoo Jun, Changwook Lee

Proc Natl Acad Sci U S A. 2017 Jun 6; 114(23): E4539–E4548. Published online 2017 May 22. doi: 10.1073/pnas.1701030114

PMCID:: PMC5468681

Abstract Article PDF–2.4M

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