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Select item 108724771.

Protein interaction network revealed by quantitative proteomic analysis links TFIIB to multiple aspects of the transcription cycle

Michael J. O’Brien, Athar Ansari

Biochim Biophys Acta Proteins Proteom. Author manuscript; available in PMC 2024 Feb 16.

Published in final edited form as: Biochim Biophys Acta Proteins Proteom. 2024 Jan 1; 1872(1): 140968. Published online 2023 Oct 19. doi: 10.1016/j.bbapap.2023.140968

PMCID:: PMC10872477

Abstract Article PDF–1.7M

Select item 107001382.

The social and structural architecture of the yeast protein interactome

André C. Michaelis, Andreas-David Brunner, Maximilian Zwiebel, Florian Meier, Maximilian T. Strauss, Isabell Bludau, Matthias Mann

Nature. 2023; 624(7990): 192–200. Published online 2023 Nov 15. doi: 10.1038/s41586-023-06739-5

PMCID:: PMC10700138

Abstract Article PDF–20M

Select item 102333683.

A systematic proximity ligation approach to studying protein‐substrate specificity identifies the substrate spectrum of the Ssh1 translocon

Nir Cohen, Naama Aviram, Maya Schuldiner

EMBO J. 2023 Jun; 42(11): e113385. Published online 2023 Apr 19. doi: 10.15252/embj.2022113385

PMCID:: PMC10233368

Abstract Article PDF–1.2M

Select item 102266194.

The SAGA HAT module is tethered by its SWIRM domain and modulates activity of the SAGA DUB module

Sara T. Haile, Sanim Rahman, James K. Fields, Benjamin C. Orsburn, Namandjé N. Bumpus, Cynthia Wolberger

Biochim Biophys Acta Gene Regul Mech. Author manuscript; available in PMC 2023 Jun 1.

Published in final edited form as: Biochim Biophys Acta Gene Regul Mech. 2023 Jun; 1866(2): 194929. Published online 2023 Mar 24. doi: 10.1016/j.bbagrm.2023.194929

PMCID:: PMC10226619

Abstract Article PDF–1.8M

Select item 101360535.

Spt3 and Spt8 Are Involved in the Formation of a Silencing Boundary by Interacting with TATA-Binding Protein

Kazuma Kamata, Takahito Ayano, Masaya Oki

Biomolecules. 2023 Apr; 13(4): 619. Published online 2023 Mar 30. doi: 10.3390/biom13040619

PMCID:: PMC10136053

Abstract Article PDF–2.6M

Select item 98363486.

A synthetic genetic array screen for interactions with the RNA helicase DED1 during cell stress in budding yeast

Sara B Carey, Hannah M List, Ashwin Siby, Paolo Guerra, Timothy A Bolger

G3 (Bethesda) 2023 Jan; 13(1): jkac296. Published online 2022 Nov 21. doi: 10.1093/g3journal/jkac296

PMCID:: PMC9836348

Abstract Article PDF–857K

Select item 92966737.

Conformational landscape of the yeast SAGA complex as revealed by cryo-EM

Diana Vasyliuk, Joeseph Felt, Ellen D. Zhong, Bonnie Berger, Joseph H. Davis, Calvin K. Yip

Sci Rep. 2022; 12: 12306. Published online 2022 Jul 19. doi: 10.1038/s41598-022-16391-0

PMCID:: PMC9296673

Abstract Article PDF–3.9M

Select item 92860238.

Mediator recruits the cohesin loader Scc2 to RNA Pol II-transcribed genes and promotes sister chromatid cohesion

Mark Mattingly, Chris Seidel, Sofía Muñoz, Yan Hao, Ying Zhang, Zhihui Wen, Laurence Florens, Frank Uhlmann, Jennifer L. Gerton

Curr Biol. 2022 Jul 11; 32(13): 2884–2896.e6. doi: 10.1016/j.cub.2022.05.019

PMCID:: PMC9286023

Abstract Article

Select item 92098119.

New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources

Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry

Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224

PMCID:: PMC9209811

Abstract Article PDF–818K

Select item 865057510.

Fur4‐mediated uracil‐scavenging to screen for surface protein regulators

Katherine M. Paine, Gabrielle B. Ecclestone, Chris MacDonald

Traffic. 2021 Nov; 22(11): 397–408. Published online 2021 Sep 23. doi: 10.1111/tra.12815

PMCID:: PMC8650575

Abstract Article PDF–25M

Select item 857691711.

Tubulin isotypes optimize distinct spindle positioning mechanisms during yeast mitosis

Emmanuel T. Nsamba, Abesh Bera, Michael Costanzo, Charles Boone, Mohan L. Gupta, Jr.

J Cell Biol. 2021 Dec 6; 220(12): e202010155. Published online 2021 Nov 5. doi: 10.1083/jcb.202010155

PMCID:: PMC8576917

Abstract Article PDF–7.4M

Select item 821475912.

Genome-wide imaging screen uncovers molecular determinants of arsenite-induced protein aggregation and toxicity

Stefanie Andersson, Antonia Romero, Joana Isabel Rodrigues, Sansan Hua, Xinxin Hao, Therese Jacobson, Vivien Karl, Nathalie Becker, Arghavan Ashouri, Sebastien Rauch, Thomas Nyström, Beidong Liu, Markus J. Tamás

J Cell Sci. 2021 Jun 1; 134(11): jcs258338. Published online 2021 Jun 4. doi: 10.1242/jcs.258338

PMCID:: PMC8214759

Abstract Article

Select item 813191513.

SAGA and SAGA-like SLIK transcriptional coactivators are structurally and biochemically equivalent

Klaudia Adamus, Cyril Reboul, Jarrod Voss, Cheng Huang, Ralf B. Schittenhelm, Sarah N. Le, Andrew M. Ellisdon, Hans Elmlund, Marion Boudes, Dominika Elmlund

J Biol Chem. 2021 Jan-Jun; 296: 100671. Published online 2021 Apr 15. doi: 10.1016/j.jbc.2021.100671

PMCID:: PMC8131915

Abstract Article PDF–2.0M

Select item 801257314.

Inactivating histone deacetylase HDA promotes longevity by mobilizing trehalose metabolism

Ruofan Yu, Xiaohua Cao, Luyang Sun, Jun-yi Zhu, Brian M Wasko, Wei Liu, Emeline Crutcher, Haiying Liu, Myeong Chan Jo, Lidong Qin, Matt Kaeberlein, Zhe Han, Weiwei Dang

Nat Commun. 2021; 12: 1981. Published online 2021 Mar 31. doi: 10.1038/s41467-021-22257-2

PMCID:: PMC8012573

Abstract Article PDF–3.1M

Select item 775888015.

Purified Smc5/6 Complex Exhibits DNA Substrate Recognition and Compaction

Pilar Gutierrez-Escribano, Silvia Hormeño, Julene Madariaga-Marcos, Roger Solé-Soler, Francis J. O’Reilly, Kyle Morris, Clara Aicart-Ramos, Ricardo Aramayo, Alex Montoya, Holger Kramer, Juri Rappsilber, Jordi Torres-Rosell, Fernando Moreno-Herrero, Luis Aragon

Mol Cell. 2020 Dec 17; 80(6): 1039–1054.e6. doi: 10.1016/j.molcel.2020.11.012

PMCID:: PMC7758880

Abstract Article

Select item 771875116.

Comprehensive Synthetic Genetic Array Analysis of Alleles That Interact with Mutation of the Saccharomyces cerevisiae RecQ Helicases Hrq1 and Sgs1

Elsbeth Sanders, Phoebe A. Nguyen, Cody M. Rogers, Matthew L. Bochman

G3 (Bethesda) 2020 Dec; 10(12): 4359–4368. Published online 2020 Oct 28. doi: 10.1534/g3.120.401709

PMCID:: PMC7718751

Abstract Article PDF–1.2M

Select item 759445517.

SAGA–CORE subunit Spt7 is required for correct Ubp8 localization, chromatin association and deubiquitinase activity

Carme Nuño-Cabanes, Varinia García-Molinero, Manuel Martín-Expósito, María-Eugenia Gas, Paula Oliete-Calvo, Encar García-Oliver, María de la Iglesia-Vayá, Susana Rodríguez-Navarro

Epigenetics Chromatin. 2020; 13: 46. Published online 2020 Oct 28. doi: 10.1186/s13072-020-00367-3

PMCID:: PMC7594455

Abstract Article PDF–1.9M

Select item 750254518.

Genetic characterization of three distinct mechanisms supporting RNA-driven DNA repair and modification reveals major role of DNA polymerase ζ

Chance Meers, Havva Keskin, Gabor Banyai, Olga Mazina, Taehwan Yang, Alli L. Gombolay, Kuntal Mukherjee, Efiyenia I. Kaparos, Gary Newnam, Alexander Mazin, Francesca Storici

Mol Cell. Author manuscript; available in PMC 2021 Sep 17.

Published in final edited form as: Mol Cell. 2020 Sep 17; 79(6): 1037–1050.e5. Published online 2020 Sep 2. doi: 10.1016/j.molcel.2020.08.011

PMCID:: PMC7502545

Abstract Article PDF–1.9M

Select item 729300519.

Prp5−Spt8/Spt3 interaction mediates a reciprocal coupling between splicing and transcription

Wei Shao, Zhan Ding, Zeng-Zhang Zheng, Ji-Jia Shen, Yu-Xian Shen, Jia Pu, Yu-Jie Fan, Charles C Query, Yong-Zhen Xu

Nucleic Acids Res. 2020 Jun 19; 48(11): 5799–5813. Published online 2020 May 13. doi: 10.1093/nar/gkaa311

PMCID:: PMC7293005

Abstract Article PDF–5.7M

Select item 703273220.

Skp, Cullin, F-box (SCF)-Met30 and SCF-Cdc4-Mediated Proteolysis of CENP-A Prevents Mislocalization of CENP-A for Chromosomal Stability in Budding Yeast

Wei-Chun Au, Tianyi Zhang, Prashant K. Mishra, Jessica R. Eisenstatt, Robert L. Walker, Josefina Ocampo, Anthony Dawson, Jack Warren, Michael Costanzo, Anastasia Baryshnikova, Karin Flick, David J. Clark, Paul S. Meltzer, Richard E. Baker, Chad Myers, Charles Boone, Peter Kaiser, Munira A. Basrai

PLoS Genet. 2020 Feb; 16(2): e1008597. Published online 2020 Feb 7. doi: 10.1371/journal.pgen.1008597

PMCID:: PMC7032732

Abstract Article PDF–3.9M

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Microarray technology comparison (3OPHs version 1)
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Salmonella enterica subsp. enterica serovar Enteritidis str. 629163
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