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Items: 20

1.
Protein interaction network revealed by quantitative proteomic analysis links TFIIB to multiple aspects of the transcription cycle
Michael J. O’Brien, Athar Ansari
Biochim Biophys Acta Proteins Proteom. Author manuscript; available in PMC 2024 Feb 16.
Published in final edited form as: Biochim Biophys Acta Proteins Proteom. 2024 Jan 1; 1872(1): 140968. Published online 2023 Oct 19. doi: 10.1016/j.bbapap.2023.140968
PMCID:
PMC10872477
AbstractArticlePDF–1.7M
2.
The social and structural architecture of the yeast protein interactome
André C. Michaelis, Andreas-David Brunner, Maximilian Zwiebel, Florian Meier, Maximilian T. Strauss, Isabell Bludau, Matthias Mann
Nature. 2023; 624(7990): 192–200. Published online 2023 Nov 15. doi: 10.1038/s41586-023-06739-5
PMCID:
PMC10700138
AbstractArticlePDF–20M
3.
New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources
Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry
Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224
PMCID:
PMC9209811
AbstractArticlePDF–818K
4.
The histone chaperone Spt6 is required for normal recruitment of the capping enzyme Abd1 to transcribed regions
Rajaraman Gopalakrishnan, Fred Winston
J Biol Chem. 2021 Oct; 297(4): 101205. Published online 2021 Sep 17. doi: 10.1016/j.jbc.2021.101205
PMCID:
PMC8511950
AbstractArticlePDF–3.1M
5.
The cellular economy of the Saccharomyces cerevisiae zinc proteome
Yirong Wang, Erin Weisenhorn, Colin MacDiarmid, Claudia Andreini, Michael Bucci, Janet Taggart, Lucia Banci, Jason Russell, Joshua J. Coon, David J. Eide
Metallomics. Author manuscript; available in PMC 2019 Dec 12.
Published in final edited form as: Metallomics. 2018 Dec 12; 10(12): 1755–1776. doi: 10.1039/c8mt00269j
PMCID:
PMC6291366
AbstractArticlePDF–3.0M
6.
A role for Mog1 in H2Bub1 and H3K4me3 regulation affecting RNAPII transcription and mRNA export
Paula Oliete‐Calvo, Joan Serrano‐Quílez, Carme Nuño‐Cabanes, María E Pérez‐Martínez, Luis M Soares, Bernhard Dichtl, Stephen Buratowski, José E Pérez‐Ortín, Susana Rodríguez‐Navarro
EMBO Rep. 2018 Nov; 19(11): e45992. Published online 2018 Sep 24. doi: 10.15252/embr.201845992
PMCID:
PMC6216277
AbstractArticlePDF–1.7M
7.
Genome-Wide Mapping of Decay Factor–mRNA Interactions in Yeast Identifies Nutrient-Responsive Transcripts as Targets of the Deadenylase Ccr4
Jason E. Miller, Liye Zhang, Haoyang Jiang, Yunfei Li, B. Franklin Pugh, Joseph C. Reese
G3 (Bethesda) 2018 Jan; 8(1): 315–330. Published online 2017 Nov 20. doi: 10.1534/g3.117.300415
PMCID:
PMC5765359
AbstractArticlePDF–2.2M
8.
A global S. cerevisiae small ubiquitin-related modifier (SUMO) system interactome
Tharan Srikumar, Megan C Lewicki, Brian Raught
Mol Syst Biol. 2013; 9: 668. Published online 2013 May 28. doi: 10.1038/msb.2013.23
PMCID:
PMC4039371
AbstractArticlePDF–2.5M
9.
Co-translational Localization of an LTR-Retrotransposon RNA to the Endoplasmic Reticulum Nucleates Virus-Like Particle Assembly Sites
Jung H. Doh, Sheila Lutz, M. Joan Curcio
PLoS Genet. 2014 Mar; 10(3): e1004219. Published online 2014 Mar 6. doi: 10.1371/journal.pgen.1004219
PMCID:
PMC3945221
AbstractArticlePDF–11M
10.
Ty1 Gag enhances the stability and nuclear export of Ty1 mRNA
Mary Ann Checkley, Jessica A. Mitchell, Linda D. Eizenstat, Stephen J. Lockett, David J. Garfinkel
Traffic. Author manuscript; available in PMC 2014 Jan 1.
Published in final edited form as: Traffic. 2013 Jan; 14(1): 57–69. Published online 2012 Oct 17. doi: 10.1111/tra.12013
PMCID:
PMC3548082
AbstractArticlePDF–2.4M
11.
Evolutionary Genomics of Transposable Elements in Saccharomyces cerevisiae
Martin Carr, Douda Bensasson, Casey M. Bergman
PLoS One. 2012; 7(11): e50978. Published online 2012 Nov 30. doi: 10.1371/journal.pone.0050978
PMCID:
PMC3511429
AbstractArticlePDF–917K
12.
Characterization of a Highly Conserved Histone Related Protein, Ydl156w, and Its Functional Associations Using Quantitative Proteomic Analyses
Joshua M. Gilmore, Mihaela E. Sardiu, Swaminathan Venkatesh, Brent Stutzman, Allison Peak, Chris W. Seidel, Jerry L. Workman, Laurence Florens, Michael P. Washburn
Mol Cell Proteomics. 2012 Apr; 11(4): M111.011544. Published online 2011 Dec 22. doi: 10.1074/mcp.M111.011544
PMCID:
PMC3322567
AbstractArticlePDF–2.3M
13.
Characterization of Cell Cycle Specific Protein Interaction Networks of the Yeast 26S Proteasome Complex by the QTAX Strategy
Robyn M. Kaake, Tijana Milenković, Nataša Pržulj, Peter Kaiser, Lan Huang
J Proteome Res. Author manuscript; available in PMC 2011 Jul 21.
Published in final edited form as: J Proteome Res. 2010 Apr 5; 9(4): 2016–2029. doi: 10.1021/pr1000175
PMCID:
PMC3140958
AbstractArticlePDF–3.2M
14.
Cdc48 and Ufd3, new partners of the ubiquitin protease Ubp3, are required for ribophagy
Batool Ossareh-Nazari, Mélanie Bonizec, Mickael Cohen, Svetlana Dokudovskaya, François Delalande, Christine Schaeffer, Alain Van Dorsselaer, Catherine Dargemont
EMBO Rep. 2010 Jul; 11(7): 548–554. Published online 2010 May 28. doi: 10.1038/embor.2010.74
PMCID:
PMC2897114
AbstractArticlePDF–597K
15.
Kinetic Pathway of Pyrophosphorolysis by a Retrotransposon Reverse Transcriptase
Manjula Pandey, Smita S. Patel, Abram Gabriel
PLoS One. 2008; 3(1): e1389. Published online 2008 Jan 2. doi: 10.1371/journal.pone.0001389
PMCID:
PMC2148107
AbstractArticlePDF–924K
16.
Complete DNA sequence of yeast chromosome II.
H Feldmann, M Aigle, G Aljinovic, B André, M C Baclet, C Barthe, A Baur, A M Bécam, N Biteau, E Boles, et al.
EMBO J. 1994 Dec 15; 13(24): 5795–5809. doi: 10.1002/j.1460-2075.1994.tb06923.x
PMCID:
PMC395553
SummaryPage BrowsePDF–3.1M
17.
A Nucleocapsid Functionality Contained within the Amino Terminus of the Ty1 Protease That Is Distinct and Separable from Proteolytic Activity
Joseph F. Lawler, Jr., Gennady V. Merkulov, Jef D. Boeke
J Virol. 2002 Jan; 76(1): 346–354. doi: 10.1128/JVI.76.1.346-354.2002
PMCID:
PMC135695
AbstractArticlePDF–925K
18.
A Ty1 Reverse Transcriptase Active-Site Aspartate Mutation Blocks Transposition but Not Polymerization
Ozcan Uzun, Abram Gabriel
J Virol. 2001 Jul; 75(14): 6337–6347. doi: 10.1128/JVI.75.14.6337-6347.2001
PMCID:
PMC114356
AbstractArticlePDF–842K
19.
Invading the Yeast Nucleus: a Nuclear Localization Signal at the C Terminus of Ty1 Integrase Is Required for Transposition In Vivo
Margaret A. Kenna, Carrie Baker Brachmann, Scott E. Devine, Jef D. Boeke
Mol Cell Biol. 1998 Feb; 18(2): 1115–1124. doi: 10.1128/mcb.18.2.1115
PMCID:
PMC108824
AbstractArticlePDF–1.4M
20.
A Ty1 Integrase Nuclear Localization Signal Required for Retrotransposition
Sharon P. Moore, Lori A. Rinckel, David J. Garfinkel
Mol Cell Biol. 1998 Feb; 18(2): 1105–1114. doi: 10.1128/mcb.18.2.1105
PMCID:
PMC108823
AbstractArticlePDF–1.0M

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