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Items: 15

1.
New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources
Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry
Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224
PMCID:
PMC9209811
AbstractArticlePDF–818K
2.
The nucleotide sequence of Saccharomyces cerevisiae chromosome XII
M. Johnston, L. Hillier, L. Riles, other members of the Genome Sequencing Center, K. Albermann, B. André, W. Ansorge, V. Benes, M. Brückner, H. Delius, E. Dubois, A. Düsterhöft, K.-D. Entian, M. Floeth, A. Goffeau, U. Hebling, K. Heumann, D. Heuss-Neitzel, H. Hilbert, F. Hilger, K. Kleine, P. Kötter, E. J. Louis, F. Messenguy, H. W. Mewes, T. Miosga, D. Möstl, S. Müller-Auer, U. Nentwich, B. Obermaier, E. Piravandi, T. M. Pohl, D. Portetelle, B. Purnelle, S. Rechmann, M. Rieger, M. Rinke, M. Rose, M. Scharfe, B. Scherens, P. Scholler, C. Schwager, S. Schwarz, A. P. Underwood, L. A. Urrestarazu, M. Vandenbol, P. Verhasselt, F. Vierendeels, M Voet, G. Volckaert, H. Voss, R. Wambutt, E. Wedler, H. Wedler, F. K. Zimmermann, A. Zollner, J. Hani, J. D. Hoheisel
Nature. Author manuscript; available in PMC 2019 Jul 9.
Published in final edited form as: Nature. 1997 May 29; 387(6632 Suppl): 87–90.
PMCID:
PMC6615710
AbstractArticlePDF–424K
3.
A global interaction network maps a wiring diagram of cellular function
Michael Costanzo, Benjamin VanderSluis, Elizabeth N. Koch, Anastasia Baryshnikova, Carles Pons, Guihong Tan, Wen Wang, Matej Usaj, Julia Hanchard, Susan D. Lee, Vicent Pelechano, Erin B. Styles, Maximilian Billmann, Jolanda van Leeuwen, Nydia van Dyk, Zhen-Yuan Lin, Elena Kuzmin, Justin Nelson, Jeff S. Piotrowski, Tharan Srikumar, Sondra Bahr, Yiqun Chen, Raamesh Deshpande, Christoph F. Kurat, Sheena C. Li, Zhijian Li, Mojca Mattiazzi Usaj, Hiroki Okada, Natasha Pascoe, Bryan-Joseph San Luis, Sara Sharifpoor, Emira Shuteriqi, Scott W. Simpkins, Jamie Snider, Harsha Garadi Suresh, Yizhao Tan, Hongwei Zhu, Noel Malod-Dognin, Vuk Janjic, Natasa Przulj, Olga G. Troyanskaya, Igor Stagljar, Tian Xia, Yoshikazu Ohya, Anne-Claude Gingras, Brian Raught, Michael Boutros, Lars M. Steinmetz, Claire L. Moore, Adam P. Rosebrock, Amy A. Caudy, Chad L. Myers, Brenda Andrews, Charles Boone
Science. Author manuscript; available in PMC 2017 Oct 30.
Published in final edited form as: Science. 2016 Sep 23; 353(6306): aaf1420. doi: 10.1126/science.aaf1420
PMCID:
PMC5661885
AbstractArticlePDF–2.6M
4.
Fructose-1,6-bisphosphate couples glycolytic flux to activation of Ras
Ken Peeters, Frederik Van Leemputte, Baptiste Fischer, Beatriz M. Bonini, Hector Quezada, Maksym Tsytlonok, Dorien Haesen, Ward Vanthienen, Nuno Bernardes, Carmen Bravo Gonzalez-Blas, Veerle Janssens, Peter Tompa, Wim Versées, Johan M. Thevelein
Nat Commun. 2017; 8: 922. Published online 2017 Oct 13. doi: 10.1038/s41467-017-01019-z
PMCID:
PMC5640605
AbstractArticlePDF–1.6M
5.
The Genetic Landscape of a Cell
Michael Costanzo, Anastasia Baryshnikova, Jeremy Bellay, Yungil Kim, Eric D. Spear, Carolyn S. Sevier, Huiming Ding, Judice L.Y. Koh, Kiana Toufighi, Sara Mostafavi, Jeany Prinz, Robert P. St. Onge, Benjamin VanderSluis, Taras Makhnevych, Franco J. Vizeacoumar, Solmaz Alizadeh, Sondra Bahr, Renee L. Brost, Yiqun Chen, Murat Cokol, Raamesh Deshpande, Zhijian Li, Zhen-Yuan Lin, Wendy Liang, Michaela Marback, Jadine Paw, Bryan-Joseph San Luis, Ermira Shuteriqi, Amy Hin Yan Tong, Nydia van Dyk, Iain M. Wallace, Joseph A. Whitney, Matthew T. Weirauch, Guoqing Zhong, Hongwei Zhu, Walid A. Houry, Michael Brudno, Sasan Ragibizadeh, Balázs Papp, Csaba Pál, Frederick P. Roth, Guri Giaever, Corey Nislow, Olga G. Troyanskaya, Howard Bussey, Gary D. Bader, Anne-Claude Gingras, Quaid D. Morris, Philip M. Kim, Chris A. Kaiser, Chad L. Myers, Brenda J. Andrews, Charles Boone
Science. Author manuscript; available in PMC 2017 Sep 15.
Published in final edited form as: Science. 2010 Jan 22; 327(5964): 425–431. doi: 10.1126/science.1180823
PMCID:
PMC5600254
AbstractArticlePDF–2.4M
6.
Mapping the Synthetic Dosage Lethality Network of CDK1/CDC28
Christine Zimmermann, Ignacio Garcia, Manja Omerzu, Pierre Chymkowitch, Beibei Zhang, Jorrit M. Enserink
G3 (Bethesda) 2017 Jun; 7(6): 1753–1766. Published online 2017 Apr 18. doi: 10.1534/g3.117.042317
Correction in:
G3 (Bethesda). 2019 Aug; 9(8): 2787.
PMCID:
PMC5473755
AbstractArticlePDF–2.7M
7.
Functional wiring of the yeast kinome revealed by global analysis of genetic network motifs
Sara Sharifpoor, Dewald van Dyk, Michael Costanzo, Anastasia Baryshnikova, Helena Friesen, Alison C. Douglas, Ji-Young Youn, Benjamin VanderSluis, Chad L. Myers, Balázs Papp, Charles Boone, Brenda J. Andrews
Genome Res. 2012 Apr; 22(4): 791–801. doi: 10.1101/gr.129213.111
PMCID:
PMC3317160
AbstractArticlePDF–998K
8.
The role of the protein kinase A pathway in the response to alkaline pH stress in yeast
Carlos Casado, Asier González, Maria Platara, Amparo Ruiz, Joaquín Ariño
Biochem J. 2011 Sep 15; 438(Pt 3): 523–533. Prepublished online 2011 Jul 13. Published online 2011 Aug 26. doi: 10.1042/BJ20110607
PMCID:
PMC3253439
AbstractArticlePDF–706K
9.
Heterozygous Screen in Saccharomyces cerevisiae Identifies Dosage-Sensitive Genes That Affect Chromosome Stability
Erin D. Strome, Xiaowei Wu, Marek Kimmel, Sharon E. Plon
Genetics. 2008 Mar; 178(3): 1193–1207. doi: 10.1534/genetics.107.084103
PMCID:
PMC2278055
AbstractArticlePDF–1.8M
10.
Comparison of Thermosensitive Alleles of the Cdc25 Gene Involved in the Camp Metabolism of Saccharomyces Cerevisiae
A. Petitjean, F. Hilger, K. Tatchell
Genetics. 1990 Apr; 124(4): 797–806. doi: 10.1093/genetics/124.4.797
PMCID:
PMC1203972
SummaryPDF–2.0M
11.
Characterization, cloning and sequence analysis of the CDC25 gene which controls the cyclic AMP level of Saccharomyces cerevisiae.
J H Camonis, M Kalékine, B Gondré, H Garreau, E Boy-Marcotte, M Jacquet
EMBO J. 1986 Feb; 5(2): 375–380. doi: 10.1002/j.1460-2075.1986.tb04222.x
PMCID:
PMC1166742
SummaryPage BrowsePDF–1.5M
12.
SDC25, a CDC25-like gene which contains a RAS-activating domain and is a dispensable gene of Saccharomyces cerevisiae.
F Damak, E Boy-Marcotte, D Le-Roscouet, R Guilbaud, M Jacquet
Mol Cell Biol. 1991 Jan; 11(1): 202–212. doi: 10.1128/mcb.11.1.202
PMCID:
PMC359610
SummaryPage BrowsePDF–2.5M
13.
The Saccharomyces cerevisiae SDC25 C-domain gene product overcomes the dominant inhibitory activity of Ha-Ras Asn-17.
F Schweighoffer, H Cai, M C Chevallier-Multon, I Fath, G Cooper, B Tocque
Mol Cell Biol. 1993 Jan; 13(1): 39–43. doi: 10.1128/mcb.13.1.39
PMCID:
PMC358882
SummaryPage BrowsePDF–1.3M
14.
SDC25, a dispensable Ras guanine nucleotide exchange factor of Saccharomyces cerevisiae differs from CDC25 by its regulation.
E Boy-Marcotte, P Ikonomi, M Jacquet
Mol Biol Cell. 1996 Apr; 7(4): 529–539. doi: 10.1091/mbc.7.4.529
PMCID:
PMC275907
SummaryPage BrowsePDF–2.4M
15.
Residues crucial for Ras interaction with GDP-GTP exchangers.
M Segal, B M Willumsen, A Levitzki
Proc Natl Acad Sci U S A. 1993 Jun 15; 90(12): 5564–5568. doi: 10.1073/pnas.90.12.5564
PMCID:
PMC46761
SummaryPage BrowsePDF–1.3M

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