PMC Links for GEO Profiles (Select 38602293) - PMC

Phoebe Y T Lu, Alyssa C Kirlin, Maria J Aristizabal, Hilary T Brewis, Nancy Lévesque, Dheva T Setiaputra, Nikita Avvakumov, Joris J Benschop, Marian Groot Koerkamp, Frank C P Holstege, Nevan J Krogan, Calvin K Yip, Jacques Côté, Michael S Kobor

Genetics. 2022 Nov; 222(3): iyac136. Published online 2022 Sep 6. doi: 10.1093/genetics/iyac136

PMCID:: PMC9630986

Abstract Article PDF–2.2M

Select item 92098114.

New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources

Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry

Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224

PMCID:: PMC9209811

Abstract Article PDF–818K

Select item 81705095.

Inner Nuclear Membrane Asi Ubiquitin Ligase Catalytic Subunits Asi1p and Asi3p, but not Asi2p, confer resistance to aminoglycoside hygromycin B in Saccharomyces cerevisiae

Kelsey A Woodruff, Kyle A Richards, Melissa D Evans, Abigail R Scott, Brian M Voas, Courtney Broshar Irelan, James B Olesen, Philip J Smaldino, Eric M Rubenstein

MicroPubl Biol. 2021; 2021: 10.17912/micropub.biology.000403. Published online 2021 Jun 1. doi: 10.17912/micropub.biology.000403

PMCID:: PMC8170509

Abstract Article PDF–983K

Select item 77452596.

A Systematic Protein Turnover Map for Decoding Protein Degradation

Romain Christiano, Henning Arlt, Sonja Kabatnik, Niklas Mejhert, Zon Weng Lai, Robert V. Farese, Jr., Tobias C. Walther

Cell Rep. Author manuscript; available in PMC 2020 Dec 17.

Published in final edited form as: Cell Rep. 2020 Nov 10; 33(6): 108378. doi: 10.1016/j.celrep.2020.108378

PMCID:: PMC7745259

Abstract Article PDF–1.1M

Select item 77187517.

Comprehensive Synthetic Genetic Array Analysis of Alleles That Interact with Mutation of the Saccharomyces cerevisiae RecQ Helicases Hrq1 and Sgs1

Elsbeth Sanders, Phoebe A. Nguyen, Cody M. Rogers, Matthew L. Bochman

G3 (Bethesda) 2020 Dec; 10(12): 4359–4368. Published online 2020 Oct 28. doi: 10.1534/g3.120.401709

PMCID:: PMC7718751

Abstract Article PDF–1.2M

Select item 69412298.

Quality Control of Protein Complex Assembly by a Transmembrane Recognition Factor

Nivedita Natarajan, Ombretta Foresti, Kim Wendrich, Alexander Stein, Pedro Carvalho

Mol Cell. 2020 Jan 2; 77(1): 108–119.e9. doi: 10.1016/j.molcel.2019.10.003

PMCID:: PMC6941229

Abstract Article

Select item 64563039.

Distribution of Proteins at the Inner Nuclear Membrane Is Regulated by the Asi1 E3 Ligase in Saccharomyces cerevisiae

Christine J. Smoyer, Sarah E. Smith, Jennifer M. Gardner, Scott McCroskey, Jay R. Unruh, Sue L. Jaspersen

Genetics. 2019 Apr; 211(4): 1269–1282. Published online 2019 Feb 1. doi: 10.1534/genetics.119.301911

PMCID:: PMC6456303

Abstract Article PDF–2.1M

Select item 629136610.

The cellular economy of the Saccharomyces cerevisiae zinc proteome

Yirong Wang, Erin Weisenhorn, Colin MacDiarmid, Claudia Andreini, Michael Bucci, Janet Taggart, Lucia Banci, Jason Russell, Joshua J. Coon, David J. Eide

Metallomics. Author manuscript; available in PMC 2019 Dec 12.

Published in final edited form as: Metallomics. 2018 Dec 12; 10(12): 1755–1776. doi: 10.1039/c8mt00269j

PMCID:: PMC6291366

Abstract Article PDF–3.0M

Select item 566188511.

A global interaction network maps a wiring diagram of cellular function

Michael Costanzo, Benjamin VanderSluis, Elizabeth N. Koch, Anastasia Baryshnikova, Carles Pons, Guihong Tan, Wen Wang, Matej Usaj, Julia Hanchard, Susan D. Lee, Vicent Pelechano, Erin B. Styles, Maximilian Billmann, Jolanda van Leeuwen, Nydia van Dyk, Zhen-Yuan Lin, Elena Kuzmin, Justin Nelson, Jeff S. Piotrowski, Tharan Srikumar, Sondra Bahr, Yiqun Chen, Raamesh Deshpande, Christoph F. Kurat, Sheena C. Li, Zhijian Li, Mojca Mattiazzi Usaj, Hiroki Okada, Natasha Pascoe, Bryan-Joseph San Luis, Sara Sharifpoor, Emira Shuteriqi, Scott W. Simpkins, Jamie Snider, Harsha Garadi Suresh, Yizhao Tan, Hongwei Zhu, Noel Malod-Dognin, Vuk Janjic, Natasa Przulj, Olga G. Troyanskaya, Igor Stagljar, Tian Xia, Yoshikazu Ohya, Anne-Claude Gingras, Brian Raught, Michael Boutros, Lars M. Steinmetz, Claire L. Moore, Adam P. Rosebrock, Amy A. Caudy, Chad L. Myers, Brenda Andrews, Charles Boone

Science. Author manuscript; available in PMC 2017 Oct 30.

Published in final edited form as: Science. 2016 Sep 23; 353(6306): aaf1420. doi: 10.1126/science.aaf1420

PMCID:: PMC5661885

Abstract Article PDF–2.6M

Select item 560025412.

The Genetic Landscape of a Cell

Michael Costanzo, Anastasia Baryshnikova, Jeremy Bellay, Yungil Kim, Eric D. Spear, Carolyn S. Sevier, Huiming Ding, Judice L.Y. Koh, Kiana Toufighi, Sara Mostafavi, Jeany Prinz, Robert P. St. Onge, Benjamin VanderSluis, Taras Makhnevych, Franco J. Vizeacoumar, Solmaz Alizadeh, Sondra Bahr, Renee L. Brost, Yiqun Chen, Murat Cokol, Raamesh Deshpande, Zhijian Li, Zhen-Yuan Lin, Wendy Liang, Michaela Marback, Jadine Paw, Bryan-Joseph San Luis, Ermira Shuteriqi, Amy Hin Yan Tong, Nydia van Dyk, Iain M. Wallace, Joseph A. Whitney, Matthew T. Weirauch, Guoqing Zhong, Hongwei Zhu, Walid A. Houry, Michael Brudno, Sasan Ragibizadeh, Balázs Papp, Csaba Pál, Frederick P. Roth, Guri Giaever, Corey Nislow, Olga G. Troyanskaya, Howard Bussey, Gary D. Bader, Anne-Claude Gingras, Quaid D. Morris, Philip M. Kim, Chris A. Kaiser, Chad L. Myers, Brenda J. Andrews, Charles Boone

Science. Author manuscript; available in PMC 2017 Sep 15.

Published in final edited form as: Science. 2010 Jan 22; 327(5964): 425–431. doi: 10.1126/science.1180823

PMCID:: PMC5600254

Abstract Article PDF–2.4M

Select item 559580813.

Interrogation of γ-tubulin alleles using high-resolution fitness measurements reveals a distinct cytoplasmic function in spindle alignment

Kristian Shulist, Eric Yen, Susanne Kaitna, Allen Leary, Alexandra Decterov, Debarun Gupta, Jackie Vogel

Sci Rep. 2017; 7: 11398. Published online 2017 Sep 12. doi: 10.1038/s41598-017-11789-7

Correction in:: Sci Rep. 2018; 8: 2513.

PMCID:: PMC5595808

Abstract Article PDF–5.9M

Select item 548281914.

Recurrent background mutations in WHI2 impair proteostasis and degradation of misfolded cytosolic proteins in Saccharomyces cerevisiae

Sophie A. Comyn, Stéphane Flibotte, Thibault Mayor

Sci Rep. 2017; 7: 4183. Published online 2017 Jun 23. doi: 10.1038/s41598-017-04525-8

PMCID:: PMC5482819

Abstract Article PDF–4.5M

Select item 511994015.

Analysis of membrane proteins localizing to the inner nuclear envelope in living cells

Christine J. Smoyer, Santharam S. Katta, Jennifer M. Gardner, Lynn Stoltz, Scott McCroskey, William D. Bradford, Melainia McClain, Sarah E. Smith, Brian D. Slaughter, Jay R. Unruh, Sue L. Jaspersen

J Cell Biol. 2016 Nov 21; 215(4): 575–590. doi: 10.1083/jcb.201607043

PMCID:: PMC5119940

Abstract Article PDF–3.2M

Select item 486983516.

One library to make them all: Streamlining yeast library creation by a SWAp-Tag (SWAT) strategy

Ido Yofe, Uri Weill, Matthias Meurer, Silvia Chuartzman, Einat Zalckvar, Omer Goldman, Shifra Ben-Dor, Conny Schütze, Nils Wiedemann, Michael Knop, Anton Khmelinskii, Maya Schuldiner

Nat Methods. Author manuscript; available in PMC 2016 Sep 22.

Published in final edited form as: Nat Methods. 2016 Apr; 13(4): 371–378. Published online 2016 Feb 29. doi: 10.1038/nmeth.3795

PMCID:: PMC4869835

Abstract Article PDF–2.7M

Select item 484875817.

An inter‐species protein–protein interaction network across vast evolutionary distance

Quan Zhong, Samuel J Pevzner, Tong Hao, Yang Wang, Roberto Mosca, Jörg Menche, Mikko Taipale, Murat Taşan, Changyu Fan, Xinping Yang, Patrick Haley, Ryan R Murray, Flora Mer, Fana Gebreab, Stanley Tam, Andrew MacWilliams, Amélie Dricot, Patrick Reichert, Balaji Santhanam, Lila Ghamsari, Michael A Calderwood, Thomas Rolland, Benoit Charloteaux, Susan Lindquist, Albert‐László Barabási, David E Hill, Patrick Aloy, Michael E Cusick, Yu Xia, Frederick P Roth, Marc Vidal

Mol Syst Biol. 2016 Apr; 12(4): 865. Published online 2016 Apr 23. doi: 10.15252/msb.20156484

PMCID:: PMC4848758

Abstract Article PDF–2.1M

Select item 449343918.

Protein quality control at the inner nuclear membrane

Anton Khmelinskii, Ewa Blaszczak, Marina Pantazopoulou, Bernd Fischer, Deike J. Omnus, Gaëlle Le Dez, Audrey Brossard, Alexander Gunnarsson, Joseph D. Barry, Matthias Meurer, Daniel Kirrmaier, Charles Boone, Wolfgang Huber, Gwenaël Rabut, Per O. Ljungdahl, Michael Knop

Nature. Author manuscript; available in PMC 2015 Jul 7.

Published in final edited form as: Nature. 2014 Dec 18; 516(7531): 410–413. doi: 10.1038/nature14096

PMCID:: PMC4493439

Abstract Article PDF–984K

Select item 423078719.

Latency of transcription factor Stp1 depends on a modular regulatory motif that functions as cytoplasmic retention determinant and nuclear degron

Deike J. Omnus, Per O. Ljungdahl

Mol Biol Cell. 2014 Nov 15; 25(23): 3823–3833. doi: 10.1091/mbc.E14-06-1140

PMCID:: PMC4230787

Abstract Article PDF–2.3M

Select item 389772520.

Mapping Genetic Variants Underlying Differences in the Central Nitrogen Metabolism in Fermenter Yeasts

Matías Jara, Francisco A. Cubillos, Verónica García, Francisco Salinas, Omayra Aguilera, Gianni Liti, Claudio Martínez

PLoS One. 2014; 9(1): e86533. Published online 2014 Jan 21. doi: 10.1371/journal.pone.0086533

PMCID:: PMC3897725

Abstract Article PDF–833K

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